Wall clock time and date at job start Tue Mar 31 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47485 * 2 1 4 4 C 1.38026 * 120.06494 * 265.27927 * 3 2 1 5 5 C 1.38308 * 120.12749 * 180.27700 * 4 3 2 6 6 C 1.38356 * 120.25521 * 359.71877 * 5 4 3 7 7 C 1.37980 * 120.12211 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.05971 * 179.97438 * 7 6 5 9 9 C 1.39374 * 120.06551 * 84.99787 * 3 2 1 10 10 C 1.48280 * 120.12140 * 0.02562 * 9 3 2 11 11 C 1.39289 * 120.15948 * 269.74332 * 10 9 3 12 12 C 1.38020 * 119.94636 * 179.97438 * 11 10 9 13 13 C 1.38444 * 120.27023 * 359.97438 * 12 11 10 14 14 C 1.38115 * 120.32408 * 0.02562 * 13 12 11 15 15 C 1.38765 * 120.04883 * 359.97438 * 14 13 12 16 16 O 1.35658 * 120.13460 * 180.02562 * 15 14 13 17 17 C 1.34821 * 117.00083 * 354.40241 * 16 15 14 18 18 H 1.08002 * 119.99685 * 5.06656 * 17 16 15 19 19 C 1.38644 * 120.00124 * 185.06614 * 17 16 15 20 20 N 1.31558 * 120.00143 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00176 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46892 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47165 * 119.99985 * 21 19 17 24 24 H 1.48498 * 109.47022 * 240.00107 * 21 19 17 25 25 H 1.08992 * 109.47463 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47102 * 300.00370 * 1 2 3 27 27 H 1.09003 * 109.46593 * 59.99726 * 1 2 3 28 28 H 1.09008 * 109.46637 * 239.99856 * 2 1 3 29 29 H 1.08994 * 109.47150 * 120.00361 * 2 1 3 30 30 H 1.08002 * 119.93792 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.87431 * 179.69395 * 5 4 3 32 32 H 1.07997 * 119.93448 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47002 * 270.01965 * 8 7 6 34 34 H 1.09003 * 109.46830 * 30.02333 * 8 7 6 35 35 H 1.09005 * 109.46651 * 150.02140 * 8 7 6 36 36 H 1.07997 * 120.02787 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.86500 * 180.02562 * 12 11 10 38 38 H 1.07994 * 119.83597 * 180.27522 * 13 12 11 39 39 H 1.07999 * 119.97339 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00507 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3557 2.0399 -1.1905 5 6 2.8223 3.3419 -1.1915 6 6 2.9625 4.0331 -0.0013 7 6 2.6374 3.4261 1.1944 8 6 2.7912 4.1802 2.4902 9 6 2.1661 2.1141 1.2016 10 6 1.8151 1.4563 2.4833 11 6 0.5195 1.5499 2.9862 12 6 0.1975 0.9354 4.1793 13 6 1.1573 0.2249 4.8797 14 6 2.4454 0.1249 4.3915 15 6 2.7838 0.7374 3.1932 16 8 4.0483 0.6399 2.7117 17 6 4.9583 0.0331 3.5000 18 1 4.6497 -0.4211 4.4300 19 6 6.2901 -0.0078 3.1168 20 7 6.6658 0.5451 1.9837 21 14 7.5508 -0.8491 4.2087 22 1 6.8776 -1.3879 5.4176 23 1 8.1902 -1.9611 3.4605 24 1 8.5870 0.1335 4.6162 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.2478 1.5053 -2.1227 31 1 3.0787 3.8207 -2.1250 32 1 3.3277 5.0494 -0.0081 33 1 3.7923 4.0168 2.8890 34 1 2.6406 5.2448 2.3110 35 1 2.0517 3.8242 3.2076 36 1 -0.2325 2.1028 2.4428 37 1 -0.8076 1.0085 4.5678 38 1 0.8965 -0.2569 5.8104 39 1 3.1898 -0.4304 4.9427 40 1 7.5976 0.5169 1.7157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242815201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:54 Heat of formation + Delta-G solvation = 5.573448 kcal Electronic energy + Delta-G solvation = -22292.043398 eV Core-core repulsion = 19229.634040 eV Total energy + Delta-G solvation = -3062.409358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.69766 -38.25187 -36.27995 -33.98749 -32.51934 -32.19311 -30.10325 -29.10222 -27.98471 -26.26137 -25.33711 -23.49384 -22.34260 -21.36802 -20.09875 -19.72972 -17.93649 -17.04422 -15.73142 -15.30610 -14.86451 -14.61719 -14.45558 -13.97468 -13.61393 -13.44507 -13.25729 -13.12880 -12.93228 -12.56939 -12.41536 -12.26211 -11.80586 -11.68117 -11.49293 -11.33380 -11.08459 -11.02052 -10.86884 -10.72506 -10.60193 -10.43707 -10.26698 -10.16157 -9.31618 -8.84217 -8.05273 -7.97391 -7.91339 -7.19803 -6.43309 -4.02445 1.96640 1.99557 2.11885 2.38405 3.11665 3.13258 3.18335 3.96048 4.31100 4.54117 5.08422 5.22565 5.27786 5.34329 5.41477 5.45973 5.63114 5.66422 5.79663 5.81927 5.85156 5.90208 6.04203 6.09963 6.16431 6.24052 6.27853 6.32103 6.38383 6.50838 6.58559 6.66204 6.70868 6.80556 6.84498 7.02826 7.08747 7.16235 7.22715 7.32662 7.37328 7.40124 7.64910 7.81582 7.99766 9.01341 9.72424 10.73430 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.007310 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.270560 B = 3829.236800 C = 4647.275473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.059 4.059 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.063 4.063 8 C -0.110 4.110 9 C -0.006 4.006 10 C -0.121 4.121 11 C -0.062 4.062 12 C -0.215 4.215 13 C -0.072 4.072 14 C -0.236 4.236 15 C 0.165 3.835 16 O -0.164 6.164 17 C -0.394 4.394 18 H 0.091 0.909 19 C 0.042 3.958 20 N -0.854 5.854 21 Si 0.936 3.064 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 2.744 -1.620 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.059 4.059 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.063 4.063 8 C -0.167 4.167 9 C -0.006 4.006 10 C -0.123 4.123 11 C -0.080 4.080 12 C -0.234 4.234 13 C -0.091 4.091 14 C -0.255 4.255 15 C 0.110 3.890 16 O -0.066 6.066 17 C -0.470 4.470 18 H 0.108 0.892 19 C -0.163 4.163 20 N -0.488 5.488 21 Si 0.761 3.239 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.863 2.842 -1.970 9.514 hybrid contribution 0.846 -0.506 0.589 1.148 sum -8.018 2.336 -1.381 8.464 Atomic orbital electron populations 1.21753 0.95298 1.01131 1.01853 1.20445 0.95516 0.93090 1.02801 1.19856 0.98236 0.95508 0.92276 1.20789 1.01692 0.95196 0.97033 1.20942 1.00663 0.94943 0.97487 1.20788 1.02099 0.99731 0.92169 1.19900 0.97502 0.93873 0.95033 1.20741 1.03043 0.98092 0.94822 1.18290 0.98285 0.92357 0.91650 1.17680 0.92999 1.05166 0.96428 1.20623 0.93917 0.98204 0.95300 1.20486 0.98916 1.06069 0.97927 1.20775 0.92895 0.97190 0.98209 1.21121 0.97513 1.07799 0.99116 1.19316 0.86415 0.92116 0.91104 1.84008 1.13322 1.67669 1.41620 1.21360 0.87059 1.34826 1.03788 0.89168 1.25248 0.96867 0.97252 0.96912 1.70070 1.17474 1.40922 1.20384 0.85717 0.80035 0.78795 0.79315 1.19131 1.20182 1.20171 0.93008 0.92077 0.93278 0.91851 0.90499 0.86894 0.86934 0.86848 0.90915 0.92587 0.91427 0.87217 0.87659 0.87639 0.85550 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.90 37.16 0.37 -1.73 16 2 C -0.08 -1.44 5.59 -27.88 -0.16 -1.59 16 3 C -0.06 -1.14 5.16 -104.28 -0.54 -1.67 16 4 C -0.13 -2.26 9.67 -39.63 -0.38 -2.65 16 5 C -0.12 -2.05 10.04 -39.51 -0.40 -2.45 16 6 C -0.13 -2.29 9.69 -39.63 -0.38 -2.67 16 7 C -0.06 -1.23 5.91 -104.28 -0.62 -1.85 16 8 C -0.11 -1.97 9.62 36.01 0.35 -1.63 16 9 C -0.01 -0.12 4.83 -104.91 -0.51 -0.63 16 10 C -0.12 -2.51 2.50 -104.73 -0.26 -2.78 16 11 C -0.06 -1.11 7.90 -39.27 -0.31 -1.42 16 12 C -0.22 -3.66 10.03 -39.59 -0.40 -4.06 16 13 C -0.07 -1.31 10.03 -39.55 -0.40 -1.71 16 14 C -0.24 -5.07 9.16 -39.43 -0.36 -5.43 16 15 C 0.17 3.90 6.36 -38.74 -0.25 3.65 16 16 O -0.16 -4.56 9.21 0.36 0.00 -4.56 16 17 C -0.39 -10.86 9.49 30.88 0.29 -10.56 16 18 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 19 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 20 N -0.85 -24.92 13.67 55.48 0.76 -24.16 16 21 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.92 6.15 -51.93 -0.32 0.60 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.03 8.06 -51.92 -0.42 0.62 16 29 H 0.08 1.57 7.03 -51.93 -0.37 1.20 16 30 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.07 1.20 6.84 -51.93 -0.36 0.85 16 36 H 0.11 1.74 7.82 -52.49 -0.41 1.33 16 37 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 40 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -30.17 332.98 -8.66 -38.83 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.38 Total: 7.51 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: -4.04 Total: -38.12 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.76 Total: -24.16 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: 0.00 Total: -4.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.17 -8.66 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242815201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.405 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds