Wall clock time and date at job start Tue Mar 31 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35849 * 116.99808 * 2 1 4 4 C 1.38576 * 120.11892 * 359.97438 * 3 2 1 5 5 C 1.38187 * 120.06125 * 179.74852 * 4 3 2 6 6 C 1.50703 * 119.84903 * 180.27299 * 5 4 3 7 7 C 1.38386 * 120.30491 * 0.54906 * 5 4 3 8 8 C 1.38007 * 120.23416 * 359.44553 * 7 5 4 9 9 C 1.39303 * 119.93563 * 0.28060 * 8 7 5 10 10 C 1.48325 * 120.15052 * 180.02562 * 9 8 7 11 11 C 1.39369 * 120.12351 * 129.72683 * 10 9 8 12 12 C 1.38014 * 119.87310 * 179.74044 * 11 10 9 13 13 C 1.38327 * 120.12097 * 0.53244 * 12 11 10 14 14 C 1.50699 * 119.86981 * 179.74411 * 13 12 11 15 15 C 1.50704 * 109.46953 * 269.97285 * 14 13 12 16 16 H 1.07995 * 120.00141 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99620 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99589 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46899 * 90.00299 * 19 17 15 21 21 H 1.48497 * 109.47311 * 209.99910 * 19 17 15 22 22 H 1.48498 * 109.47309 * 330.00612 * 19 17 15 23 23 C 1.38320 * 120.25013 * 359.71548 * 13 12 11 24 24 C 1.38012 * 120.12789 * 0.02899 * 23 13 12 25 25 H 1.08997 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47296 * 300.00099 * 1 2 3 27 27 H 1.08998 * 109.47127 * 59.99584 * 1 2 3 28 28 H 1.08004 * 119.97128 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47147 * 270.27444 * 6 5 4 30 30 H 1.08999 * 109.47117 * 30.27947 * 6 5 4 31 31 H 1.09004 * 109.47195 * 150.27508 * 6 5 4 32 32 H 1.08002 * 119.88558 * 179.72738 * 7 5 4 33 33 H 1.07998 * 120.03233 * 180.29865 * 8 7 5 34 34 H 1.08001 * 120.06156 * 359.97438 * 11 10 9 35 35 H 1.07996 * 119.93484 * 180.25080 * 12 11 10 36 36 H 1.08994 * 109.47718 * 29.97482 * 14 13 12 37 37 H 1.09008 * 109.47055 * 149.97590 * 14 13 12 38 38 H 0.96997 * 119.99660 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.93724 * 179.97438 * 23 13 12 40 40 H 1.07992 * 120.06246 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2933 2.3742 -0.0005 5 6 1.9219 3.6048 0.0047 6 6 1.0990 4.8673 0.0103 7 6 3.3035 3.6833 -0.0009 8 6 4.0649 2.5323 -0.0003 9 6 3.4416 1.2865 0.0001 10 6 4.2553 0.0463 0.0014 11 6 3.9944 -0.9605 0.9290 12 6 4.7512 -2.1146 0.9220 13 6 5.7743 -2.2683 0.0038 14 6 6.6009 -3.5283 0.0051 15 6 7.7864 -3.3505 0.9185 16 1 7.9273 -2.4182 1.4450 17 6 8.6916 -4.3778 1.0810 18 7 8.5207 -5.5126 0.4386 19 14 10.1613 -4.1572 2.2126 20 1 9.7986 -4.5917 3.5855 21 1 11.2953 -4.9780 1.7171 22 1 10.5584 -2.7264 2.2351 23 6 6.0411 -1.2700 -0.9157 24 6 5.2873 -0.1139 -0.9214 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2147 2.3193 -0.0014 29 1 0.8963 5.1735 -1.0160 30 1 0.1572 4.6849 0.5279 31 1 1.6483 5.6569 0.5233 32 1 3.7877 4.6487 -0.0012 33 1 5.1429 2.5973 0.0002 34 1 3.1989 -0.8395 1.6494 35 1 4.5472 -2.8972 1.6377 36 1 5.9928 -4.3615 0.3571 37 1 6.9497 -3.7350 -1.0068 38 1 9.1573 -6.2354 0.5533 39 1 6.8414 -1.3951 -1.6301 40 1 5.4968 0.6649 -1.6395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242979368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:52 Heat of formation + Delta-G solvation = -7.227320 kcal Electronic energy + Delta-G solvation = -20728.602471 eV Core-core repulsion = 17665.638029 eV Total energy + Delta-G solvation = -3062.964441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34358 -38.36738 -37.53731 -34.02839 -32.75387 -30.78976 -30.36493 -29.99402 -28.13821 -27.38027 -25.58430 -23.15911 -22.50392 -21.46701 -21.39624 -19.95837 -17.68211 -16.50693 -16.28129 -16.09075 -15.79149 -14.93347 -14.39464 -14.33048 -14.18851 -14.06590 -13.88489 -13.78046 -12.71884 -12.68418 -12.55453 -12.41739 -12.30472 -12.08091 -11.73948 -11.42837 -11.25924 -11.22821 -10.99272 -10.81212 -10.66943 -10.44034 -10.14758 -9.52227 -9.41049 -8.85265 -8.39996 -8.28802 -8.19118 -7.39168 -6.01614 -4.05375 1.11970 1.41505 2.16846 2.24222 3.26544 3.32302 3.38312 3.42868 3.70963 4.41632 4.59245 4.60279 4.78800 4.88451 4.96146 5.02506 5.12762 5.24117 5.32665 5.36585 5.36815 5.50765 5.57517 5.61661 5.64442 5.68740 5.97072 6.06867 6.15025 6.26970 6.33975 6.42166 6.52170 6.73978 6.75740 6.82854 7.19883 7.24670 7.26528 7.41910 7.54717 7.80334 7.90959 7.94490 8.35268 9.00059 9.58204 11.08153 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028470 B = 0.003427 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.242525 B = 8168.339752 C = 8723.948606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.137 3.863 4 C -0.210 4.210 5 C -0.059 4.059 6 C -0.113 4.113 7 C -0.157 4.157 8 C -0.071 4.071 9 C -0.061 4.061 10 C -0.079 4.079 11 C -0.090 4.090 12 C -0.127 4.127 13 C -0.027 4.027 14 C 0.046 3.954 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.127 4.127 24 C -0.107 4.107 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.118 0.882 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 17.413 -1.648 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.091 3.909 4 C -0.229 4.229 5 C -0.059 4.059 6 C -0.169 4.169 7 C -0.175 4.175 8 C -0.089 4.089 9 C -0.062 4.062 10 C -0.079 4.079 11 C -0.108 4.108 12 C -0.145 4.145 13 C -0.027 4.027 14 C 0.009 3.991 15 C -0.548 4.548 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.145 4.145 24 C -0.125 4.125 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.167 17.039 -1.676 23.548 hybrid contribution 0.573 0.152 0.626 0.862 sum -15.593 17.190 -1.050 23.233 Atomic orbital electron populations 1.23048 0.79024 1.03907 1.00917 1.86213 1.20649 1.26402 1.88232 1.19032 0.91540 0.84219 0.96084 1.20977 0.99606 0.91731 1.10582 1.19665 0.93960 0.94336 0.97932 1.20786 0.99206 0.94727 1.02228 1.20844 0.93022 0.98314 1.05325 1.21112 1.00048 0.90546 0.97200 1.18248 0.89354 0.93660 1.04899 1.18296 0.97454 0.93509 0.98688 1.20984 0.98766 0.93206 0.97849 1.21002 0.96471 0.97446 0.99598 1.20741 0.92939 0.97426 0.91622 1.18379 0.93633 0.88977 0.98080 1.21069 1.07483 0.99948 1.26339 0.92448 1.25017 0.98124 0.95194 0.96046 1.69959 1.36886 1.04247 1.42298 0.86534 0.82131 0.78191 0.80847 1.20601 1.21183 1.19787 1.20979 0.99777 0.93647 1.00139 1.21023 0.95497 0.97695 0.98277 0.88253 0.92915 0.92936 0.85685 0.91187 0.91774 0.91439 0.86022 0.85140 0.87167 0.86440 0.95333 0.95327 0.92869 0.86379 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.21 8.86 -19.27 -0.17 -4.38 16 3 C 0.14 1.92 6.60 -38.87 -0.26 1.66 16 4 C -0.21 -2.42 8.68 -39.48 -0.34 -2.76 16 5 C -0.06 -0.63 5.88 -104.58 -0.62 -1.24 16 6 C -0.11 -0.83 10.00 36.01 0.36 -0.47 16 7 C -0.16 -1.76 9.68 -39.61 -0.38 -2.14 16 8 C -0.07 -0.94 9.51 -39.27 -0.37 -1.31 16 9 C -0.06 -0.93 5.48 -104.77 -0.57 -1.51 16 10 C -0.08 -1.40 5.27 -104.91 -0.55 -1.95 16 11 C -0.09 -1.66 8.79 -39.24 -0.34 -2.01 16 12 C -0.13 -2.62 9.68 -39.63 -0.38 -3.01 16 13 C -0.03 -0.61 5.07 -104.56 -0.53 -1.15 16 14 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 15 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 19 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.13 -2.59 9.68 -39.63 -0.38 -2.98 16 24 C -0.11 -1.91 9.51 -39.25 -0.37 -2.28 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.13 1.14 6.30 -52.48 -0.33 0.81 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.59 8.04 -52.49 -0.42 1.17 16 34 H 0.11 1.87 7.71 -52.49 -0.40 1.46 16 35 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.08 -51.92 -0.42 0.36 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 40 H 0.11 1.70 8.04 -52.49 -0.42 1.27 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -31.62 340.56 -9.35 -40.98 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.71 Total: -0.37 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -4.32 Total: -32.13 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.17 Total: -4.38 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.62 -9.35 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242979368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.749 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds