Wall clock time and date at job start Tue Mar 31 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36273 * 119.93982 * 2 1 4 4 C 1.40906 * 119.87360 * 180.27536 * 3 2 1 5 5 C 1.41029 * 120.11812 * 179.70000 * 4 3 2 6 6 H 1.07999 * 120.00329 * 207.75356 * 5 4 3 7 7 C 1.40018 * 119.99791 * 27.74674 * 5 4 3 8 8 N 1.30795 * 120.00064 * 15.07626 * 7 5 4 9 9 Si 1.86802 * 120.00072 * 195.07620 * 7 5 4 10 10 H 1.48498 * 109.46992 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47146 * 119.99954 * 9 7 5 12 12 H 1.48498 * 109.46953 * 240.00279 * 9 7 5 13 13 C 1.40949 * 119.76746 * 359.72117 * 4 3 2 14 14 C 1.36233 * 119.87604 * 359.97438 * 13 4 3 15 15 C 1.39913 * 119.93646 * 179.72357 * 2 1 3 16 16 C 1.47986 * 119.88479 * 359.97438 * 15 2 1 17 17 C 1.39623 * 120.14375 * 247.89667 * 16 15 2 18 18 C 1.37921 * 119.85367 * 180.02562 * 17 16 15 19 19 C 1.38412 * 120.14464 * 0.02562 * 18 17 16 20 20 C 1.38366 * 120.28872 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.92544 * 180.02562 * 20 19 18 22 22 O 1.42904 * 109.47015 * 359.97438 * 21 20 19 23 23 C 1.37955 * 120.14716 * 0.27248 * 20 19 18 24 24 C 1.50702 * 120.07103 * 179.70755 * 23 20 19 25 25 H 1.09003 * 109.46978 * 271.09734 * 1 2 3 26 26 H 1.09003 * 109.47154 * 31.09491 * 1 2 3 27 27 H 1.09004 * 109.47516 * 151.09848 * 1 2 3 28 28 H 1.07999 * 120.06100 * 359.97438 * 3 2 1 29 29 H 0.96994 * 120.00203 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.05886 * 179.97438 * 13 4 3 31 31 H 1.08006 * 119.93374 * 179.97438 * 14 13 4 32 32 H 1.08001 * 120.07627 * 359.97438 * 17 16 15 33 33 H 1.07996 * 119.92515 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.85554 * 179.97438 * 19 18 17 35 35 H 1.09005 * 109.46949 * 239.99866 * 21 20 19 36 36 H 1.08996 * 109.47174 * 119.99438 * 21 20 19 37 37 H 0.96700 * 113.99823 * 180.02562 * 22 21 20 38 38 H 1.09003 * 109.47371 * 88.54231 * 24 23 20 39 39 H 1.09003 * 109.46738 * 208.53774 * 24 23 20 40 40 H 1.08994 * 109.47128 * 328.54125 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1809 0.0000 4 6 3.5962 1.1792 -0.0059 5 6 4.3052 2.3983 -0.0123 6 1 5.2904 2.4478 -0.4521 7 6 3.7319 3.5446 0.5514 8 7 2.6902 3.4371 1.3351 9 14 4.4546 5.2276 0.1842 10 1 5.6212 5.0782 -0.7223 11 1 3.4257 6.0765 -0.4682 12 1 4.8919 5.8657 1.4518 13 6 4.2946 -0.0451 -0.0058 14 6 3.6048 -1.2198 0.0005 15 6 2.2053 -1.2124 0.0058 16 6 1.4613 -2.4917 0.0126 17 6 1.5020 -3.3206 1.1355 18 6 0.8069 -4.5118 1.1351 19 6 0.0705 -4.8864 0.0246 20 6 0.0260 -4.0696 -1.0913 21 6 -0.7789 -4.4853 -2.2957 22 8 -1.3970 -5.7486 -2.0426 23 6 0.7209 -2.8779 -1.1058 24 6 0.6765 -1.9927 -2.3247 25 1 -0.3633 0.0197 1.0275 26 1 -0.3633 0.8800 -0.5308 27 1 -0.3634 -0.8997 -0.4967 28 1 1.6472 2.1162 -0.0004 29 1 2.2933 4.2311 1.7259 30 1 5.3746 -0.0518 -0.0107 31 1 4.1390 -2.1585 0.0002 32 1 2.0773 -3.0300 2.0021 33 1 0.8379 -5.1539 2.0028 34 1 -0.4718 -5.8204 0.0292 35 1 -0.1211 -4.5699 -3.1607 36 1 -1.5470 -3.7381 -2.4949 37 1 -1.9322 -6.0789 -2.7772 38 1 -0.1718 -1.3125 -2.2491 39 1 1.5996 -1.4165 -2.3889 40 1 0.5698 -2.6088 -3.2174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243016936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:49 Heat of formation + Delta-G solvation = -24.387778 kcal Electronic energy + Delta-G solvation = -21440.715308 eV Core-core repulsion = 18377.006734 eV Total energy + Delta-G solvation = -3063.708574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.55648 -37.67729 -36.46804 -34.02196 -32.76072 -31.75504 -31.08900 -28.94487 -26.97781 -25.81976 -25.65177 -24.86029 -21.81633 -20.58223 -20.03665 -19.32250 -17.41869 -17.10469 -16.06318 -15.27204 -15.09532 -14.73203 -14.66890 -14.03254 -13.94615 -13.61907 -13.13841 -13.00904 -12.59731 -12.45165 -12.09669 -11.82638 -11.77406 -11.64316 -11.56730 -11.25436 -11.20906 -11.04870 -10.78488 -10.50109 -10.39139 -10.32678 -10.23583 -9.57303 -9.44270 -9.18522 -8.19457 -8.08249 -7.38757 -7.19311 -6.79136 -4.39718 1.76164 1.82195 2.70177 3.04101 3.06616 3.09598 3.14070 3.89283 4.17542 4.18210 4.56108 5.06208 5.22340 5.39094 5.42996 5.49002 5.53878 5.62542 5.71682 5.97612 6.00424 6.08272 6.13025 6.18486 6.28659 6.38578 6.45681 6.56983 6.63701 6.72174 6.87118 6.88502 6.98313 7.02944 7.17568 7.28715 7.33867 7.45105 7.55806 7.61839 7.89204 8.01800 8.10616 8.26208 8.58689 8.83894 8.93677 10.13912 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.003970 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.059471 B = 7050.778843 C = 7271.835881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.163 4.163 4 C 0.118 3.882 5 C -0.460 4.460 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.790 5.790 9 Si 0.908 3.092 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.274 1.274 13 C -0.229 4.229 14 C -0.068 4.068 15 C -0.193 4.193 16 C 0.014 3.986 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.115 4.115 20 C -0.101 4.101 21 C 0.122 3.878 22 O -0.571 6.571 23 C -0.080 4.080 24 C -0.115 4.115 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.117 0.883 29 H 0.280 0.720 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.377 0.623 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 -9.470 -5.093 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.047 4.047 3 C -0.182 4.182 4 C 0.116 3.884 5 C -0.489 4.489 6 H 0.096 0.904 7 C -0.143 4.143 8 N -0.415 5.415 9 Si 0.732 3.268 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.200 1.200 13 C -0.248 4.248 14 C -0.087 4.087 15 C -0.194 4.194 16 C 0.014 3.986 17 C -0.136 4.136 18 C -0.148 4.148 19 C -0.133 4.133 20 C -0.101 4.101 21 C 0.045 3.955 22 O -0.376 6.376 23 C -0.080 4.080 24 C -0.171 4.171 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.224 0.776 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.291 -9.237 -4.370 12.000 hybrid contribution 0.083 0.776 -0.408 0.880 sum -6.207 -8.461 -4.778 11.531 Atomic orbital electron populations 1.20877 0.94055 1.01071 1.00919 1.19177 0.93593 0.92653 0.99314 1.20833 0.94278 0.96002 1.07111 1.17654 0.91974 0.92063 0.86709 1.19615 1.02922 0.93031 1.33323 0.90353 1.25934 0.94222 1.01337 0.92781 1.69812 1.18833 1.31663 1.21215 0.86267 0.80057 0.81226 0.79240 1.18379 1.19689 1.19961 1.20682 0.97721 0.92565 1.13858 1.20254 0.92580 0.96427 0.99408 1.17813 0.92177 0.89855 1.19564 1.18775 0.94408 0.93740 0.91682 1.21398 0.99716 0.94319 0.98127 1.21010 0.98645 0.97005 0.98154 1.20796 0.99887 0.99762 0.92886 1.19361 0.99775 0.95342 0.95597 1.20876 0.94649 0.84657 0.95310 1.86463 1.69040 1.37182 1.44881 1.19743 0.97935 0.94278 0.96089 1.20884 1.03840 0.98506 0.93914 0.92875 0.93003 0.92142 0.86545 0.90859 0.88986 0.89472 0.86405 0.86840 0.86028 0.92609 0.92616 0.77618 0.91196 0.90244 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 9.12 36.01 0.33 -1.85 16 2 C -0.05 -1.06 5.34 -104.70 -0.56 -1.62 16 3 C -0.16 -4.11 8.24 -39.28 -0.32 -4.44 16 4 C 0.12 3.09 5.55 -106.80 -0.59 2.50 16 5 C -0.46 -11.96 9.03 -37.86 -0.34 -12.30 16 6 H 0.08 1.97 7.89 -52.49 -0.41 1.55 16 7 C 0.08 1.86 5.17 -17.33 -0.09 1.77 16 8 N -0.79 -20.10 11.00 55.55 0.61 -19.49 16 9 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 10 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 C -0.23 -5.54 9.73 -39.28 -0.38 -5.92 16 14 C -0.07 -1.53 9.69 -39.66 -0.38 -1.92 16 15 C -0.19 -4.18 4.03 -104.63 -0.42 -4.60 16 16 C 0.01 0.27 4.49 -104.88 -0.47 -0.20 16 17 C -0.12 -2.10 9.77 -39.18 -0.38 -2.48 16 18 C -0.13 -2.05 10.03 -39.63 -0.40 -2.45 16 19 C -0.12 -1.80 9.38 -39.47 -0.37 -2.17 16 20 C -0.10 -1.57 5.87 -104.68 -0.61 -2.18 16 21 C 0.12 1.47 6.18 36.01 0.22 1.69 16 22 O -0.57 -6.35 12.13 -35.23 -0.43 -6.78 16 23 C -0.08 -1.37 4.76 -104.22 -0.50 -1.86 16 24 C -0.12 -1.78 8.17 36.01 0.29 -1.49 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 27 H 0.06 1.08 4.00 -51.93 -0.21 0.87 16 28 H 0.12 3.05 6.29 -52.49 -0.33 2.72 16 29 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 30 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.77 6.99 -52.49 -0.37 1.41 16 35 H 0.06 0.60 7.48 -51.93 -0.39 0.21 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.38 2.22 9.12 45.56 0.42 2.63 16 38 H 0.07 1.03 6.53 -51.93 -0.34 0.69 16 39 H 0.08 1.40 6.93 -51.93 -0.36 1.04 16 40 H 0.05 0.67 6.68 -51.93 -0.35 0.33 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -28.44 325.39 -9.35 -37.79 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.43 Total: 9.80 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: -4.98 Total: -39.53 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.61 Total: -19.49 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.43 Total: -6.78 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.44 -9.35 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243016936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.405 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds