Wall clock time and date at job start Tue Mar 31 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47571 * 2 1 4 4 C 1.50700 * 109.46947 * 119.99906 * 2 1 3 5 5 C 1.37931 * 119.96912 * 299.99439 * 4 2 1 6 6 C 1.39347 * 119.93442 * 180.02562 * 5 4 2 7 7 C 1.48384 * 120.06234 * 179.97438 * 6 5 4 8 8 C 1.39746 * 119.99920 * 359.73332 * 7 6 5 9 9 C 1.38391 * 120.37448 * 179.71140 * 8 7 6 10 10 C 1.37719 * 120.37893 * 0.55896 * 9 8 7 11 11 C 1.40766 * 119.99420 * 359.72048 * 10 9 8 12 12 C 1.41422 * 120.18575 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99790 * 150.17428 * 12 11 10 14 14 C 1.39929 * 120.00240 * 330.18085 * 12 11 10 15 15 N 1.30829 * 119.99913 * 161.73197 * 14 12 11 16 16 Si 1.86803 * 119.99778 * 341.72835 * 14 12 11 17 17 H 1.48494 * 109.46945 * 95.41756 * 16 14 12 18 18 H 1.48500 * 109.46879 * 215.41494 * 16 14 12 19 19 H 1.48496 * 109.47275 * 335.41697 * 16 14 12 20 20 C 1.38743 * 119.99887 * 180.02562 * 7 6 5 21 21 C 1.39391 * 119.87522 * 0.25912 * 6 5 4 22 22 C 1.37883 * 119.93242 * 359.51277 * 21 6 5 23 23 C 1.38821 * 119.96923 * 120.02276 * 4 2 1 24 24 O 1.35872 * 119.93327 * 359.97069 * 23 4 2 25 25 H 1.09004 * 109.47327 * 300.00303 * 1 2 3 26 26 H 1.08997 * 109.47426 * 59.99913 * 1 2 3 27 27 H 1.09000 * 109.47958 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47327 * 239.99697 * 2 1 3 29 29 H 1.09001 * 109.47337 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46582 * 299.99998 * 3 2 1 31 31 H 1.08994 * 109.47057 * 59.99526 * 3 2 1 32 32 H 1.08001 * 120.03003 * 0.02562 * 5 4 2 33 33 H 1.07998 * 119.81241 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.81031 * 180.26113 * 9 8 7 35 35 H 1.08006 * 120.00671 * 179.69552 * 10 9 8 36 36 H 0.97009 * 119.99487 * 179.97438 * 15 14 12 37 37 H 1.07992 * 120.19277 * 0.02748 * 20 7 6 38 38 H 1.07999 * 120.03491 * 179.72085 * 21 6 5 39 39 H 1.08001 * 119.97263 * 180.21211 * 22 21 6 40 40 H 0.96700 * 113.99364 * 90.00392 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.6987 -0.2385 2.4829 6 6 2.1640 -0.8956 3.6202 7 6 1.8073 -0.3901 4.9689 8 6 1.0088 0.7492 5.0995 9 6 0.6665 1.2240 6.3535 10 6 1.1185 0.5857 7.4871 11 6 1.9287 -0.5599 7.3740 12 6 2.3946 -1.2188 8.5353 13 1 2.5774 -2.2830 8.5157 14 6 2.6186 -0.4920 9.7099 15 7 2.6979 -1.1133 10.8585 16 14 2.8046 1.3654 9.6377 17 1 1.4953 2.0053 9.9226 18 1 3.7999 1.8028 10.6493 19 1 3.2665 1.7644 8.2840 20 6 2.2718 -1.0451 6.1004 21 6 2.9699 -2.0253 3.4885 22 6 3.2962 -2.4952 2.2339 23 6 2.8306 -1.8388 1.1024 24 8 3.1576 -2.3014 -0.1326 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.0775 0.6394 2.5820 33 1 0.6532 1.2597 4.2167 34 1 0.0454 2.1029 6.4438 35 1 0.8518 0.9643 8.4628 36 1 2.8536 -0.6094 11.6727 37 1 2.8934 -1.9228 6.0031 38 1 3.3357 -2.5339 4.3682 39 1 3.9178 -3.3724 2.1312 40 1 3.9734 -1.9250 -0.4902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243246591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:01 Heat of formation + Delta-G solvation = -37.018435 kcal Electronic energy + Delta-G solvation = -21102.470866 eV Core-core repulsion = 18038.214586 eV Total energy + Delta-G solvation = -3064.256281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16584 -39.59076 -37.59708 -36.40811 -35.46048 -32.92065 -32.10181 -30.87890 -29.04130 -27.95572 -27.09583 -24.60338 -24.26055 -22.46598 -21.93955 -20.65076 -19.37129 -19.11287 -17.84283 -17.03611 -16.72066 -16.44130 -16.05339 -15.55818 -15.05280 -14.92673 -14.67712 -14.58708 -14.50774 -14.23378 -13.93153 -13.54207 -13.37854 -13.12737 -13.05929 -12.86882 -12.65820 -12.47359 -12.29171 -12.12397 -11.97272 -11.68300 -11.58154 -11.44318 -11.06116 -11.01628 -10.19087 -9.72834 -9.55354 -8.90886 -8.69102 -6.52713 -0.14119 0.40836 0.79059 1.11022 1.25879 1.39934 1.48593 2.11549 2.49469 2.85170 3.31936 3.55859 3.69457 3.79936 3.90133 4.19347 4.28677 4.34483 4.36746 4.49429 4.51933 4.55835 4.63501 4.83791 4.86628 4.93215 4.98688 5.02021 5.04437 5.11498 5.17476 5.22731 5.33067 5.41032 5.41870 5.50224 5.61942 5.65148 5.79029 5.88872 5.90195 6.03499 6.23978 6.38510 6.71757 6.81501 6.87979 8.18173 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.004124 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.018201 B = 6788.089855 C = 7447.867909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C -0.142 4.142 4 C -0.102 4.102 5 C -0.094 4.094 6 C -0.055 4.055 7 C -0.025 4.025 8 C -0.213 4.213 9 C -0.082 4.082 10 C -0.248 4.248 11 C 0.072 3.928 12 C -0.489 4.489 13 H 0.054 0.946 14 C 0.049 3.951 15 N -0.852 5.852 16 Si 0.965 3.035 17 H -0.256 1.256 18 H -0.277 1.277 19 H -0.255 1.255 20 C -0.208 4.208 21 C -0.116 4.116 22 C -0.144 4.144 23 C 0.098 3.902 24 O -0.499 6.499 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.293 0.707 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.143 0.857 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 5.431 -20.722 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.200 4.200 4 C -0.103 4.103 5 C -0.111 4.111 6 C -0.055 4.055 7 C -0.025 4.025 8 C -0.232 4.232 9 C -0.100 4.100 10 C -0.267 4.267 11 C 0.070 3.930 12 C -0.519 4.519 13 H 0.073 0.927 14 C -0.165 4.165 15 N -0.478 5.478 16 Si 0.789 3.211 17 H -0.181 1.181 18 H -0.204 1.204 19 H -0.179 1.179 20 C -0.227 4.227 21 C -0.134 4.134 22 C -0.162 4.162 23 C 0.054 3.946 24 O -0.312 6.312 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.161 0.839 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.565 5.035 -20.384 21.004 hybrid contribution 0.682 0.198 0.997 1.224 sum 0.117 5.233 -19.387 20.081 Atomic orbital electron populations 1.21847 0.93998 1.01609 1.02590 1.20051 0.96249 0.96110 0.94466 1.21863 1.01089 0.94452 1.02558 1.20309 0.99207 0.95197 0.95590 1.21062 0.99679 1.00019 0.90371 1.19053 0.98155 0.95948 0.92364 1.18735 0.97086 0.95430 0.91241 1.20930 1.05846 0.99340 0.97090 1.20955 0.98119 0.98765 0.92181 1.21242 1.05799 1.01756 0.97925 1.17805 0.90376 0.91911 0.92914 1.19452 1.41719 0.96326 0.94395 0.92743 1.26792 0.90811 1.05328 0.93596 1.69732 1.37062 1.41175 0.99865 0.85489 0.79045 0.77368 0.79220 1.18124 1.20382 1.17851 1.21283 1.06220 1.03438 0.91750 1.21262 0.98119 0.96191 0.97795 1.21454 1.01863 1.01509 0.91383 1.18351 0.98223 0.93283 0.84774 1.84747 1.48150 1.69097 1.29174 0.92767 0.90579 0.93616 0.89141 0.92678 0.90690 0.92899 0.84491 0.84941 0.84975 0.88450 0.89622 0.87880 0.86032 0.83892 0.73520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.00 71.98 0.65 -1.90 16 2 C -0.05 -0.93 3.05 -11.54 -0.04 -0.96 16 3 C -0.14 -2.25 9.01 71.98 0.65 -1.60 16 4 C -0.10 -2.50 4.79 -19.80 -0.09 -2.60 16 5 C -0.09 -2.67 8.08 22.46 0.18 -2.49 16 6 C -0.06 -1.91 5.88 -20.03 -0.12 -2.03 16 7 C -0.02 -1.02 5.87 -20.09 -0.12 -1.14 16 8 C -0.21 -8.13 9.44 22.67 0.21 -7.91 16 9 C -0.08 -3.31 10.01 22.18 0.22 -3.09 16 10 C -0.25 -11.80 7.17 22.77 0.16 -11.64 16 11 C 0.07 3.76 5.10 -21.32 -0.11 3.66 16 12 C -0.49 -28.05 9.57 23.46 0.22 -27.83 16 13 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 14 C 0.05 2.66 5.40 85.25 0.46 3.13 16 15 N -0.85 -47.48 13.93 21.82 0.30 -47.18 16 16 Si 0.97 43.31 24.52 68.60 1.68 44.99 16 17 H -0.26 -10.77 6.71 99.48 0.67 -10.10 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.25 -11.70 6.86 99.48 0.68 -11.02 16 20 C -0.21 -9.85 9.17 22.95 0.21 -9.64 16 21 C -0.12 -3.76 9.42 22.46 0.21 -3.55 16 22 C -0.14 -3.87 9.97 22.33 0.22 -3.64 16 23 C 0.10 2.41 6.68 22.56 0.15 2.56 16 24 O -0.50 -9.66 12.25 -92.11 -1.13 -10.79 16 25 H 0.05 1.00 7.38 -2.38 -0.02 0.99 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 1.53 6.98 -2.38 -0.02 1.51 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.91 7.38 -2.39 -0.02 0.89 16 32 H 0.14 3.55 5.22 -2.91 -0.02 3.53 16 33 H 0.13 4.08 6.18 -2.91 -0.02 4.06 16 34 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.10 4.62 4.72 -2.91 -0.01 4.60 16 36 H 0.29 14.65 8.30 -92.70 -0.77 13.88 16 37 H 0.10 4.75 6.19 -2.91 -0.02 4.74 16 38 H 0.12 4.08 6.19 -2.91 -0.02 4.07 16 39 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.41 3.93 9.06 -74.06 -0.67 3.26 16 Total: -1.00 -64.01 323.32 4.27 -59.73 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.33 Total: 23.93 kcal Atomic # 6 Polarization: -73.77 SS G_CDS: 3.08 Total: -70.68 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.30 Total: -47.18 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.13 Total: -10.79 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.68 Total: 44.99 kcal Total: -64.01 4.27 -59.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243246591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.714 kcal (2) G-P(sol) polarization free energy of solvation -64.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds