Wall clock time and date at job start Tue Mar 31 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37912 * 119.96514 * 2 1 4 4 C 1.39377 * 119.92953 * 179.97438 * 3 2 1 5 5 C 1.48367 * 120.06335 * 179.97438 * 4 3 2 6 6 C 1.39377 * 120.11912 * 0.02562 * 5 4 3 7 7 C 1.37993 * 119.86944 * 179.97438 * 6 5 4 8 8 C 1.38343 * 120.12900 * 359.74345 * 7 6 5 9 9 C 1.38300 * 120.24304 * 0.51372 * 8 7 6 10 10 C 1.50700 * 119.93724 * 179.76864 * 9 8 7 11 11 C 1.50706 * 109.47062 * 269.71772 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.38039 * 120.12712 * 359.48576 * 9 8 7 20 20 C 1.39377 * 119.87270 * 0.27629 * 4 3 2 21 21 C 1.37903 * 119.93468 * 359.46845 * 20 4 3 22 22 C 1.50697 * 119.96986 * 180.23307 * 21 20 4 23 23 C 1.38829 * 120.06346 * 0.53033 * 21 20 4 24 24 O 1.35873 * 119.93673 * 179.70221 * 23 21 20 25 25 H 1.09001 * 109.46741 * 90.00164 * 1 2 3 26 26 H 1.08997 * 109.47369 * 210.00166 * 1 2 3 27 27 H 1.09006 * 109.47167 * 330.00787 * 1 2 3 28 28 H 1.07994 * 120.03474 * 359.97343 * 3 2 1 29 29 H 1.07996 * 120.06238 * 359.95213 * 6 5 4 30 30 H 1.08003 * 119.92908 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.87984 * 180.27822 * 8 7 6 32 32 H 1.09004 * 109.47406 * 149.72478 * 10 9 8 33 33 H 1.08993 * 109.47274 * 29.72105 * 10 9 8 34 34 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 35 35 H 1.07996 * 120.06719 * 180.27942 * 19 9 8 36 36 H 1.08006 * 120.03454 * 179.70173 * 20 4 3 37 37 H 1.09002 * 109.47505 * 270.29992 * 22 21 20 38 38 H 1.09007 * 109.47247 * 30.29857 * 22 21 20 39 39 H 1.09009 * 109.47234 * 150.29755 * 22 21 20 40 40 H 0.96703 * 113.99879 * 270.02263 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1948 0.0000 4 6 3.5896 1.1939 0.0005 5 6 4.3336 2.4775 0.0000 6 6 3.6414 3.6872 -0.0006 7 6 4.3386 4.8780 -0.0006 8 6 5.7220 4.8727 0.0053 9 6 6.4140 3.6753 0.0005 10 6 7.9210 3.6776 0.0017 11 6 8.4245 3.6778 -1.4187 12 1 7.7233 3.6767 -2.2401 13 6 9.7802 3.6802 -1.6697 14 7 10.6340 3.6879 -0.6695 15 14 10.4042 3.6811 -3.4304 16 1 11.8892 3.6906 -3.4293 17 1 9.9174 2.4641 -4.1286 18 1 9.9020 4.8891 -4.1329 19 6 5.7270 2.4781 0.0005 20 6 4.2830 -0.0151 -0.0047 21 6 3.5888 -1.2066 0.0006 22 6 4.3378 -2.5143 0.0002 23 6 2.2005 -1.2027 0.0001 24 8 1.5191 -2.3782 -0.0008 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.6558 2.1300 -0.0004 29 1 2.5614 3.6925 -0.0014 30 1 3.8031 5.8160 -0.0006 31 1 6.2636 5.8071 0.0099 32 1 8.2854 2.7884 0.5162 33 1 8.2826 4.5683 0.5155 34 1 10.3101 3.6877 0.2448 35 1 6.2684 1.5436 0.0014 36 1 5.3631 -0.0188 -0.0092 37 1 4.5189 -2.8291 -1.0276 38 1 5.2905 -2.3875 0.5145 39 1 3.7459 -3.2722 0.5134 40 1 1.3225 -2.7182 -0.8844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243306258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:15 Heat of formation + Delta-G solvation = -23.393358 kcal Electronic energy + Delta-G solvation = -20772.414741 eV Core-core repulsion = 17708.749287 eV Total energy + Delta-G solvation = -3063.665453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24910 -38.73191 -36.64564 -33.92222 -33.69534 -32.32334 -31.10667 -29.11408 -27.25463 -26.85002 -26.24440 -23.28237 -23.00889 -21.54448 -20.49392 -19.68612 -18.35595 -16.94957 -16.38317 -16.14048 -15.43980 -15.05393 -14.28158 -14.00593 -13.81074 -13.65893 -13.42765 -13.35260 -13.31024 -13.04446 -12.71635 -12.48143 -12.21739 -12.07443 -11.97846 -11.55416 -11.41167 -11.31054 -11.12332 -10.74614 -10.47898 -10.33798 -10.15714 -9.83406 -9.19808 -8.92071 -8.64523 -8.40680 -7.98951 -7.57525 -6.41379 -4.12913 0.83061 1.31637 1.98537 2.15694 3.41879 3.43283 3.60112 3.62347 4.15724 4.42407 4.56342 4.67713 4.70066 4.74608 5.18522 5.29472 5.31655 5.35309 5.38684 5.44302 5.47007 5.49197 5.55327 5.68934 5.73337 5.83984 5.91911 6.02094 6.06635 6.17940 6.26110 6.44481 6.50146 6.53545 6.61419 6.79101 6.94340 6.99550 7.09311 7.13903 7.54163 7.56487 7.60031 8.08444 8.39693 8.80198 9.58111 10.97589 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.004003 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.420681 B = 6993.778348 C = 7962.569851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.026 4.026 5 C -0.058 4.058 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.028 4.028 10 C 0.035 3.965 11 C -0.593 4.593 12 H 0.051 0.949 13 C 0.017 3.983 14 N -0.910 5.910 15 Si 1.069 2.931 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.108 4.108 20 C -0.105 4.105 21 C -0.102 4.102 22 C -0.112 4.112 23 C 0.089 3.911 24 O -0.494 6.494 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.269 0.731 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.665 -8.023 0.837 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.127 4.127 4 C -0.026 4.026 5 C -0.058 4.058 6 C -0.152 4.152 7 C -0.139 4.139 8 C -0.136 4.136 9 C -0.029 4.029 10 C -0.002 4.002 11 C -0.631 4.631 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.546 5.546 15 Si 0.897 3.103 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.102 4.102 22 C -0.169 4.169 23 C 0.045 3.955 24 O -0.303 6.303 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -17.252 -7.966 0.536 19.010 hybrid contribution -1.432 0.043 0.346 1.474 sum -18.685 -7.924 0.882 20.314 Atomic orbital electron populations 1.20663 0.90808 1.03026 1.02116 1.20057 0.96465 0.92355 1.01827 1.20980 0.93175 0.97251 1.01280 1.18871 0.92714 0.92535 0.98517 1.18664 0.93100 0.91452 1.02625 1.20933 0.98855 0.91860 1.03600 1.20966 0.94393 0.97309 1.01265 1.21165 0.93609 0.98296 1.00507 1.20391 0.98274 0.91879 0.92311 1.18485 0.86108 0.97142 0.98465 1.21890 0.94143 1.56083 0.91010 0.93101 1.25877 0.93202 0.93643 1.05924 1.70791 1.37232 1.46355 1.00253 0.83532 0.76215 0.76655 0.73867 1.20673 1.21364 1.21353 1.21124 0.92313 0.98445 1.00708 1.21136 1.00403 0.90619 1.00110 1.20103 0.92898 0.96038 1.01199 1.20697 0.99894 0.93951 1.02338 1.18084 0.89090 0.84727 1.03625 1.84758 1.76178 1.36362 1.33049 0.91476 0.91002 0.91565 0.85469 0.86747 0.86673 0.86374 0.96246 0.96166 0.92056 0.86209 0.84996 0.91288 0.91258 0.91011 0.76161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.78 36.00 0.35 -0.65 16 2 C -0.11 -1.29 5.89 -104.52 -0.62 -1.91 16 3 C -0.11 -1.45 9.07 -39.28 -0.36 -1.81 16 4 C -0.03 -0.41 5.88 -104.88 -0.62 -1.02 16 5 C -0.06 -1.02 5.88 -104.89 -0.62 -1.63 16 6 C -0.13 -2.15 9.43 -39.25 -0.37 -2.52 16 7 C -0.12 -2.00 10.03 -39.63 -0.40 -2.39 16 8 C -0.12 -2.30 9.69 -39.52 -0.38 -2.68 16 9 C -0.03 -0.62 5.06 -104.67 -0.53 -1.15 16 10 C 0.03 0.89 4.41 -29.03 -0.13 0.76 16 11 C -0.59 -16.77 9.09 -34.44 -0.31 -17.08 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 14 N -0.91 -27.48 13.65 55.43 0.76 -26.72 16 15 Si 1.07 25.16 29.90 -169.99 -5.08 20.08 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.11 -2.15 9.08 -39.25 -0.36 -2.51 16 20 C -0.10 -1.56 9.07 -39.28 -0.36 -1.91 16 21 C -0.10 -1.34 5.89 -104.53 -0.62 -1.95 16 22 C -0.11 -1.20 9.78 36.00 0.35 -0.85 16 23 C 0.09 1.10 6.65 -39.14 -0.26 0.84 16 24 O -0.49 -5.04 11.56 -19.34 -0.22 -5.26 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 27 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.13 1.47 6.20 -52.49 -0.33 1.15 16 29 H 0.11 1.48 6.20 -52.49 -0.33 1.16 16 30 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.02 0.51 7.96 -51.93 -0.41 0.10 16 33 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 34 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 35 H 0.12 2.33 6.20 -52.49 -0.33 2.00 16 36 H 0.13 1.96 6.20 -52.48 -0.33 1.63 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.07 0.72 7.52 -51.92 -0.39 0.33 16 40 H 0.38 2.23 9.06 45.56 0.41 2.65 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -32.03 334.93 -9.33 -41.36 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.52 Total: 3.57 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: -5.31 Total: -38.07 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.76 Total: -26.72 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.22 Total: -5.26 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.03 -9.33 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243306258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.970 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds