Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37774 * 119.95521 * 2 1 4 4 C 1.39695 * 119.91015 * 179.97438 * 3 2 1 5 5 C 1.47881 * 120.08916 * 179.97438 * 4 3 2 6 6 C 1.40017 * 119.88885 * 309.98469 * 5 4 3 7 7 C 1.36199 * 120.11669 * 179.97438 * 6 5 4 8 8 C 1.40964 * 119.88327 * 0.02562 * 7 6 5 9 9 C 1.40997 * 120.11225 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99398 * 150.11105 * 9 8 7 11 11 C 1.39974 * 120.00402 * 330.11234 * 9 8 7 12 12 N 1.30816 * 120.00296 * 161.72025 * 11 9 8 13 13 Si 1.86801 * 119.99860 * 341.72679 * 11 9 8 14 14 H 1.48506 * 109.47213 * 95.41333 * 13 11 9 15 15 H 1.48499 * 109.47314 * 215.41542 * 13 11 9 16 16 H 1.48500 * 109.47322 * 335.41617 * 13 11 9 17 17 C 1.40935 * 119.77151 * 359.76260 * 8 7 6 18 18 C 1.36227 * 119.88207 * 0.48598 * 17 8 7 19 19 C 1.50707 * 119.93933 * 179.76126 * 18 17 8 20 20 C 1.39702 * 119.82359 * 0.27853 * 4 3 2 21 21 C 1.37766 * 119.91115 * 359.46366 * 20 4 3 22 22 C 1.50703 * 119.95475 * 180.23140 * 21 20 4 23 23 C 1.38958 * 119.95694 * 180.02562 * 2 1 3 24 24 O 1.35810 * 119.91071 * 0.02868 * 23 2 1 25 25 H 1.09003 * 109.47108 * 90.00133 * 1 2 3 26 26 H 1.08993 * 109.47330 * 210.00049 * 1 2 3 27 27 H 1.09003 * 109.47177 * 330.00459 * 1 2 3 28 28 H 1.07999 * 120.04316 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.93839 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.05556 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00078 * 179.97438 * 12 11 9 32 32 H 1.08002 * 120.05799 * 180.24095 * 17 8 7 33 33 H 1.09003 * 109.46826 * 269.72824 * 19 18 17 34 34 H 1.09000 * 109.47128 * 149.73065 * 19 18 17 35 35 H 1.09000 * 109.47261 * 29.72474 * 19 18 17 36 36 H 1.08003 * 120.03879 * 179.70031 * 20 4 3 37 37 H 1.09001 * 109.47452 * 270.30225 * 22 21 20 38 38 H 1.09000 * 109.46827 * 30.30406 * 22 21 20 39 39 H 1.08997 * 109.46971 * 150.29955 * 22 21 20 40 40 H 0.96702 * 114.00444 * 89.99879 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1937 0.0000 4 6 3.5919 1.1926 0.0005 5 6 4.3343 2.4715 0.0000 6 6 4.0103 3.4660 -0.9310 7 6 4.6907 4.6458 -0.9353 8 6 5.7230 4.8647 -0.0007 9 6 6.4309 6.0841 -0.0012 10 1 6.8434 6.4693 0.9196 11 6 6.5990 6.7953 -1.1950 12 7 6.9240 8.0620 -1.1616 13 14 6.3590 5.9357 -2.8361 14 1 4.9734 6.1666 -3.3179 15 1 7.3241 6.4791 -3.8253 16 1 6.5886 4.4781 -2.6696 17 6 6.0421 3.8622 0.9371 18 6 5.3589 2.6837 0.9297 19 6 5.7027 1.6087 1.9284 20 6 4.2857 -0.0199 -0.0048 21 6 3.5905 -1.2093 0.0006 22 6 4.3380 -2.5179 0.0001 23 6 2.2009 -1.2039 -0.0005 24 8 1.5191 -2.3785 -0.0017 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6549 2.1290 -0.0004 29 1 3.2194 3.2971 -1.6468 30 1 4.4397 5.4123 -1.6535 31 1 7.0408 8.5548 -1.9889 32 1 6.8296 4.0265 1.6577 33 1 6.4667 0.9540 1.5090 34 1 4.8103 1.0260 2.1567 35 1 6.0800 2.0685 2.8418 36 1 5.3657 -0.0248 -0.0093 37 1 4.5186 -2.8328 -1.0277 38 1 5.2908 -2.3922 0.5143 39 1 3.7452 -3.2750 0.5133 40 1 1.3220 -2.7181 -0.8854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243308467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = -25.563540 kcal Electronic energy + Delta-G solvation = -21284.726910 eV Core-core repulsion = 18220.967350 eV Total energy + Delta-G solvation = -3063.759559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.89860 -38.22827 -36.31707 -34.01145 -33.46626 -32.06847 -31.41196 -29.37949 -26.95904 -26.62992 -26.04655 -24.93630 -21.66305 -20.97785 -20.38181 -19.79133 -18.08567 -17.11159 -15.99797 -15.84353 -15.38736 -14.93665 -14.23291 -13.73183 -13.60422 -13.40104 -13.17643 -13.15290 -12.87356 -12.85304 -12.57093 -12.36228 -12.21130 -11.96301 -11.89310 -11.76686 -11.48625 -11.16146 -11.01465 -10.82249 -10.55977 -10.27624 -10.11317 -9.87550 -9.61123 -9.24636 -8.34747 -8.26991 -7.71309 -7.28278 -7.07803 -4.55950 1.40699 1.62745 2.52369 2.66980 3.05059 3.16568 3.26044 3.87608 3.90686 4.38411 4.45697 4.92847 5.03783 5.20907 5.31093 5.49475 5.60493 5.63231 5.65994 5.76110 5.77834 5.83593 5.85872 5.94124 5.96158 6.10602 6.19083 6.26855 6.41382 6.41845 6.49663 6.69170 6.71966 6.76201 6.82979 7.00985 7.08751 7.12629 7.41978 7.59070 7.75019 7.81328 7.81858 8.03246 8.24395 8.57546 8.69040 9.93506 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.004326 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.382540 B = 6471.622792 C = 6808.076809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.119 4.119 4 C 0.016 3.984 5 C -0.203 4.203 6 C -0.049 4.049 7 C -0.245 4.245 8 C 0.101 3.899 9 C -0.437 4.437 10 H 0.092 0.908 11 C 0.084 3.916 12 N -0.800 5.800 13 Si 0.914 3.086 14 H -0.269 1.269 15 H -0.290 1.290 16 H -0.243 1.243 17 C -0.211 4.211 18 C -0.028 4.028 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.105 4.105 22 C -0.108 4.108 23 C 0.069 3.931 24 O -0.496 6.496 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.287 0.713 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 -14.876 -0.984 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.016 3.984 5 C -0.204 4.204 6 C -0.067 4.067 7 C -0.264 4.264 8 C 0.097 3.903 9 C -0.465 4.465 10 H 0.110 0.890 11 C -0.137 4.137 12 N -0.423 5.423 13 Si 0.740 3.260 14 H -0.195 1.195 15 H -0.217 1.217 16 H -0.166 1.166 17 C -0.230 4.230 18 C -0.029 4.029 19 C -0.167 4.167 20 C -0.134 4.134 21 C -0.106 4.106 22 C -0.165 4.165 23 C 0.025 3.975 24 O -0.304 6.304 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.780 -14.531 -0.436 16.041 hybrid contribution -0.081 -0.025 -1.328 1.330 sum -6.861 -14.556 -1.764 16.189 Atomic orbital electron populations 1.20644 0.91323 1.02751 1.01804 1.20030 0.96111 0.92531 1.01824 1.21099 0.93624 0.96788 1.02234 1.18913 0.92177 0.92896 0.94418 1.17883 1.03962 0.94351 1.04248 1.20362 0.97343 0.92778 0.96252 1.20698 1.01695 0.98424 1.05553 1.17768 0.90074 0.91890 0.90524 1.19546 1.28942 1.01400 0.96578 0.88968 1.26241 0.91348 0.93958 1.02116 1.69692 1.33173 1.08003 1.31420 0.86268 0.78013 0.82219 0.79508 1.19527 1.21749 1.16587 1.20563 1.03549 0.93867 1.05043 1.19194 0.94042 0.94834 0.94785 1.20848 1.00898 0.97443 0.97543 1.21142 0.99761 0.90659 1.01869 1.20035 0.92840 0.95791 1.01933 1.20642 0.99657 0.94383 1.01815 1.18025 0.89037 0.84482 1.05969 1.84752 1.76296 1.36695 1.32695 0.91795 0.91306 0.91691 0.85997 0.88787 0.88167 0.90210 0.88050 0.92320 0.92235 0.92613 0.85878 0.91799 0.91711 0.91304 0.76824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.78 36.00 0.35 -0.90 16 2 C -0.10 -1.52 5.89 -104.53 -0.62 -2.13 16 3 C -0.12 -1.95 9.14 -39.21 -0.36 -2.31 16 4 C 0.02 0.29 4.70 -104.86 -0.49 -0.21 16 5 C -0.20 -4.18 5.49 -104.63 -0.57 -4.76 16 6 C -0.05 -1.06 9.43 -39.65 -0.37 -1.43 16 7 C -0.24 -5.80 7.10 -39.28 -0.28 -6.08 16 8 C 0.10 2.51 5.10 -106.80 -0.55 1.96 16 9 C -0.44 -11.55 9.55 -37.89 -0.36 -11.91 16 10 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 11 C 0.08 2.14 5.40 -17.33 -0.09 2.05 16 12 N -0.80 -20.78 13.93 55.55 0.77 -20.00 16 13 Si 0.91 20.45 24.51 -169.99 -4.17 16.28 16 14 H -0.27 -5.85 6.70 56.52 0.38 -5.48 16 15 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.24 -5.61 6.87 56.52 0.39 -5.22 16 17 C -0.21 -4.83 9.36 -39.28 -0.37 -5.20 16 18 C -0.03 -0.59 5.83 -104.69 -0.61 -1.20 16 19 C -0.11 -1.87 8.44 36.01 0.30 -1.57 16 20 C -0.12 -1.87 7.54 -39.21 -0.30 -2.17 16 21 C -0.11 -1.51 5.89 -104.53 -0.62 -2.13 16 22 C -0.11 -1.23 9.78 36.01 0.35 -0.88 16 23 C 0.07 0.98 6.66 -39.05 -0.26 0.72 16 24 O -0.50 -5.86 11.56 -19.15 -0.22 -6.08 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.12 1.94 8.04 -52.49 -0.42 1.52 16 29 H 0.09 1.82 8.03 -52.49 -0.42 1.40 16 30 H 0.10 2.37 4.73 -52.49 -0.25 2.12 16 31 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.06 0.90 7.49 -51.93 -0.39 0.51 16 34 H 0.06 0.98 6.45 -51.93 -0.33 0.65 16 35 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.12 1.93 6.86 -52.48 -0.36 1.57 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.07 0.75 7.52 -51.93 -0.39 0.36 16 40 H 0.38 2.82 9.06 45.56 0.41 3.23 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -27.89 326.41 -8.20 -36.08 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.66 Total: 6.95 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: -4.84 Total: -38.15 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.77 Total: -20.00 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.22 Total: -6.08 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.17 Total: 16.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.89 -8.20 -36.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243308467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.517 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds