Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37774 * 119.95521 * 2 1 4 4 C 1.39695 * 119.91015 * 179.97438 * 3 2 1 5 5 C 1.47881 * 120.08916 * 179.97438 * 4 3 2 6 6 C 1.40017 * 119.88885 * 309.98469 * 5 4 3 7 7 C 1.36199 * 120.11669 * 179.97438 * 6 5 4 8 8 C 1.40964 * 119.88327 * 0.02562 * 7 6 5 9 9 C 1.40997 * 120.11225 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99398 * 150.11105 * 9 8 7 11 11 C 1.39974 * 120.00402 * 330.11234 * 9 8 7 12 12 N 1.30816 * 120.00296 * 161.72025 * 11 9 8 13 13 Si 1.86801 * 119.99860 * 341.72679 * 11 9 8 14 14 H 1.48506 * 109.47213 * 95.41333 * 13 11 9 15 15 H 1.48499 * 109.47314 * 215.41542 * 13 11 9 16 16 H 1.48500 * 109.47322 * 335.41617 * 13 11 9 17 17 C 1.40935 * 119.77151 * 359.76260 * 8 7 6 18 18 C 1.36227 * 119.88207 * 0.48598 * 17 8 7 19 19 C 1.50707 * 119.93933 * 179.76126 * 18 17 8 20 20 C 1.39702 * 119.82359 * 0.27853 * 4 3 2 21 21 C 1.37766 * 119.91115 * 359.46366 * 20 4 3 22 22 C 1.50703 * 119.95475 * 180.23140 * 21 20 4 23 23 C 1.38958 * 119.95694 * 180.02562 * 2 1 3 24 24 O 1.35810 * 119.91071 * 0.02868 * 23 2 1 25 25 H 1.09003 * 109.47108 * 90.00133 * 1 2 3 26 26 H 1.08993 * 109.47330 * 210.00049 * 1 2 3 27 27 H 1.09003 * 109.47177 * 330.00459 * 1 2 3 28 28 H 1.07999 * 120.04316 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.93839 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.05556 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00078 * 179.97438 * 12 11 9 32 32 H 1.08002 * 120.05799 * 180.24095 * 17 8 7 33 33 H 1.09003 * 109.46826 * 269.72824 * 19 18 17 34 34 H 1.09000 * 109.47128 * 149.73065 * 19 18 17 35 35 H 1.09000 * 109.47261 * 29.72474 * 19 18 17 36 36 H 1.08003 * 120.03879 * 179.70031 * 20 4 3 37 37 H 1.09001 * 109.47452 * 270.30225 * 22 21 20 38 38 H 1.09000 * 109.46827 * 30.30406 * 22 21 20 39 39 H 1.08997 * 109.46971 * 150.29955 * 22 21 20 40 40 H 0.96702 * 114.00444 * 89.99879 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1937 0.0000 4 6 3.5919 1.1926 0.0005 5 6 4.3343 2.4715 0.0000 6 6 4.0103 3.4660 -0.9310 7 6 4.6907 4.6458 -0.9353 8 6 5.7230 4.8647 -0.0007 9 6 6.4309 6.0841 -0.0012 10 1 6.8434 6.4693 0.9196 11 6 6.5990 6.7953 -1.1950 12 7 6.9240 8.0620 -1.1616 13 14 6.3590 5.9357 -2.8361 14 1 4.9734 6.1666 -3.3179 15 1 7.3241 6.4791 -3.8253 16 1 6.5886 4.4781 -2.6696 17 6 6.0421 3.8622 0.9371 18 6 5.3589 2.6837 0.9297 19 6 5.7027 1.6087 1.9284 20 6 4.2857 -0.0199 -0.0048 21 6 3.5905 -1.2093 0.0006 22 6 4.3380 -2.5179 0.0001 23 6 2.2009 -1.2039 -0.0005 24 8 1.5191 -2.3785 -0.0017 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6549 2.1290 -0.0004 29 1 3.2194 3.2971 -1.6468 30 1 4.4397 5.4123 -1.6535 31 1 7.0408 8.5548 -1.9889 32 1 6.8296 4.0265 1.6577 33 1 6.4667 0.9540 1.5090 34 1 4.8103 1.0260 2.1567 35 1 6.0800 2.0685 2.8418 36 1 5.3657 -0.0248 -0.0093 37 1 4.5186 -2.8328 -1.0277 38 1 5.2908 -2.3922 0.5143 39 1 3.7452 -3.2750 0.5133 40 1 1.3220 -2.7181 -0.8854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243308467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = -40.483608 kcal Electronic energy + Delta-G solvation = -21285.373892 eV Core-core repulsion = 18220.967350 eV Total energy + Delta-G solvation = -3064.406542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10745 -39.80144 -37.51184 -35.75107 -34.54372 -33.69117 -32.92378 -30.84858 -28.14471 -27.98533 -27.31421 -26.52356 -23.19893 -22.50822 -21.64657 -21.33078 -19.12868 -18.96771 -17.64059 -17.02795 -16.72775 -16.33409 -15.84466 -15.34123 -14.86249 -14.76798 -14.53131 -14.46012 -14.03561 -13.98899 -13.95439 -13.78861 -13.61376 -13.35233 -13.10400 -12.87733 -12.77177 -12.60676 -12.50507 -12.42116 -12.10696 -11.91097 -11.58485 -11.43280 -11.18093 -11.01956 -9.74363 -9.48344 -9.41103 -8.96362 -8.84956 -6.50723 0.12456 0.46358 0.85262 0.89161 1.24026 1.38798 1.46278 2.09110 2.47949 2.78191 3.41741 3.45654 3.92689 3.95660 3.97648 4.22180 4.24610 4.42539 4.51240 4.57943 4.63045 4.71841 4.75971 4.81236 4.83824 4.85479 4.94444 4.96747 5.02954 5.04183 5.09979 5.24362 5.32889 5.39870 5.47132 5.58181 5.64748 5.73328 5.80121 5.90767 6.04853 6.08435 6.21137 6.36767 6.70350 6.80248 6.94439 8.11654 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.004326 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.382540 B = 6471.622792 C = 6808.076809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.125 4.125 4 C -0.016 4.016 5 C -0.180 4.180 6 C -0.060 4.060 7 C -0.255 4.255 8 C 0.081 3.919 9 C -0.480 4.480 10 H 0.058 0.942 11 C 0.051 3.949 12 N -0.843 5.843 13 Si 0.965 3.035 14 H -0.258 1.258 15 H -0.275 1.275 16 H -0.255 1.255 17 C -0.224 4.224 18 C -0.035 4.035 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.106 4.106 23 C 0.082 3.918 24 O -0.496 6.496 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.296 0.704 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 -18.995 -1.716 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.143 4.143 4 C -0.016 4.016 5 C -0.181 4.181 6 C -0.078 4.078 7 C -0.274 4.274 8 C 0.078 3.922 9 C -0.509 4.509 10 H 0.077 0.923 11 C -0.164 4.164 12 N -0.468 5.468 13 Si 0.788 3.212 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.179 1.179 17 C -0.243 4.243 18 C -0.036 4.036 19 C -0.160 4.160 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.162 4.162 23 C 0.037 3.963 24 O -0.308 6.308 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -8.686 -18.665 -1.176 20.620 hybrid contribution 0.286 0.841 -0.984 1.326 sum -8.399 -17.824 -2.160 19.822 Atomic orbital electron populations 1.20681 0.89205 1.03276 1.03065 1.20315 0.97708 0.91988 1.01006 1.21136 0.93076 0.97705 1.02420 1.18802 0.92816 0.92062 0.97903 1.18331 1.02540 0.95111 1.02153 1.20666 0.97702 0.92348 0.97073 1.20778 1.01792 0.99397 1.05466 1.17912 0.90531 0.91909 0.91806 1.19480 1.31871 1.03387 0.96114 0.92335 1.26822 0.90968 0.94304 1.04354 1.69713 1.35646 1.08947 1.32523 0.85493 0.78751 0.80331 0.76585 1.18369 1.20135 1.17929 1.20749 1.04215 0.94510 1.04876 1.19629 0.93569 0.94925 0.95429 1.20844 1.01811 0.96501 0.96874 1.21159 0.99947 0.90662 1.01755 1.20330 0.93268 0.96410 1.00927 1.20688 0.99679 0.92794 1.03063 1.18149 0.89175 0.85151 1.03812 1.84691 1.75823 1.35519 1.34764 0.90085 0.90562 0.91422 0.86168 0.86453 0.88507 0.89383 0.87967 0.90335 0.91473 0.91675 0.85687 0.90188 0.91063 0.90595 0.74005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.78 71.24 0.70 -1.34 16 2 C -0.11 -2.79 5.89 -19.80 -0.12 -2.91 16 3 C -0.13 -3.78 9.14 22.51 0.21 -3.57 16 4 C -0.02 -0.53 4.70 -20.02 -0.09 -0.62 16 5 C -0.18 -7.19 5.49 -19.87 -0.11 -7.29 16 6 C -0.06 -2.53 9.43 22.23 0.21 -2.32 16 7 C -0.26 -12.28 7.10 22.46 0.16 -12.12 16 8 C 0.08 4.20 5.10 -21.27 -0.11 4.09 16 9 C -0.48 -27.12 9.55 23.37 0.22 -26.89 16 10 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 11 C 0.05 2.75 5.40 85.26 0.46 3.21 16 12 N -0.84 -46.12 13.93 21.83 0.30 -45.82 16 13 Si 0.96 43.15 24.51 68.60 1.68 44.83 16 14 H -0.26 -10.95 6.70 99.48 0.67 -10.28 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.26 -11.79 6.87 99.48 0.68 -11.10 16 17 C -0.22 -10.51 9.36 22.46 0.21 -10.30 16 18 C -0.04 -1.44 5.83 -19.91 -0.12 -1.56 16 19 C -0.10 -3.29 8.44 71.24 0.60 -2.69 16 20 C -0.12 -3.41 7.54 22.51 0.17 -3.24 16 21 C -0.11 -2.69 5.89 -19.80 -0.12 -2.81 16 22 C -0.11 -1.94 9.78 71.24 0.70 -1.24 16 23 C 0.08 1.97 6.66 22.62 0.15 2.12 16 24 O -0.50 -9.31 11.56 -91.42 -1.06 -10.36 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.37 7.52 -2.39 -0.02 1.35 16 27 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.12 3.59 8.04 -2.91 -0.02 3.56 16 29 H 0.12 4.35 8.03 -2.91 -0.02 4.32 16 30 H 0.10 4.65 4.73 -2.91 -0.01 4.63 16 31 H 0.30 14.47 8.30 -92.71 -0.77 13.70 16 32 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 33 H 0.08 2.19 7.49 -2.39 -0.02 2.18 16 34 H 0.07 2.04 6.45 -2.39 -0.02 2.02 16 35 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.13 3.54 6.86 -2.91 -0.02 3.52 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 39 H 0.08 1.30 7.52 -2.39 -0.02 1.28 16 40 H 0.40 3.88 9.06 -74.06 -0.67 3.21 16 Total: -1.00 -62.55 326.41 4.37 -58.17 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.32 Total: 22.67 kcal Atomic # 6 Polarization: -72.62 SS G_CDS: 3.12 Total: -69.50 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.30 Total: -45.82 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.06 Total: -10.36 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.68 Total: 44.83 kcal Total: -62.55 4.37 -58.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243308467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.688 kcal (2) G-P(sol) polarization free energy of solvation -62.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds