Wall clock time and date at job start Tue Mar 31 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38007 * 119.93454 * 2 1 4 4 C 1.39399 * 119.86576 * 179.97438 * 3 2 1 5 5 C 1.48288 * 120.12225 * 180.02562 * 4 3 2 6 6 C 1.39289 * 120.16326 * 310.00520 * 5 4 3 7 7 C 1.38008 * 119.94276 * 179.97438 * 6 5 4 8 8 C 1.38445 * 120.27782 * 359.97438 * 7 6 5 9 9 C 1.38110 * 120.32018 * 0.02562 * 8 7 6 10 10 C 1.38764 * 120.04883 * 0.25170 * 9 8 7 11 11 O 1.35663 * 120.13311 * 179.74939 * 10 9 8 12 12 C 1.34814 * 117.00429 * 354.39775 * 11 10 9 13 13 H 1.08003 * 119.99367 * 5.06905 * 12 11 10 14 14 C 1.38649 * 120.00381 * 185.06838 * 12 11 10 15 15 N 1.31558 * 119.99790 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99811 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47521 * 60.00054 * 16 14 12 18 18 H 1.48504 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47273 * 299.99646 * 16 14 12 20 20 C 1.39395 * 119.75155 * 0.28008 * 4 3 2 21 21 C 1.38006 * 119.86971 * 359.46861 * 20 4 3 22 22 C 1.50701 * 119.93517 * 180.25331 * 21 20 4 23 23 C 1.38331 * 119.93455 * 180.02562 * 2 1 3 24 24 C 1.50693 * 119.87606 * 359.97429 * 23 2 1 25 25 H 1.09000 * 109.47282 * 89.99375 * 1 2 3 26 26 H 1.09003 * 109.47321 * 209.99857 * 1 2 3 27 27 H 1.08996 * 109.46916 * 329.99547 * 1 2 3 28 28 H 1.07994 * 120.06702 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.02720 * 359.95510 * 6 5 4 30 30 H 1.08006 * 119.86051 * 179.97438 * 7 6 5 31 31 H 1.07992 * 119.84179 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.97889 * 179.97438 * 9 8 7 33 33 H 0.96998 * 119.99617 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.06244 * 179.72131 * 20 4 3 35 35 H 1.09002 * 109.46567 * 270.27517 * 22 21 20 36 36 H 1.08993 * 109.46872 * 30.27524 * 22 21 20 37 37 H 1.08998 * 109.46976 * 150.28074 * 22 21 20 38 38 H 1.08999 * 109.47363 * 89.99599 * 24 23 2 39 39 H 1.08997 * 109.47671 * 210.00582 * 24 23 2 40 40 H 1.09001 * 109.47083 * 330.00426 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1960 0.0000 4 6 3.5897 1.1943 0.0005 5 6 4.3354 2.4760 0.0011 6 6 4.0185 3.4705 -0.9212 7 6 4.7151 4.6619 -0.9163 8 6 5.7286 4.8740 0.0027 9 6 6.0521 3.8957 0.9222 10 6 5.3642 2.6905 0.9255 11 8 5.6839 1.7263 1.8247 12 6 6.7547 1.9539 2.6116 13 1 7.2654 2.9045 2.5668 14 6 7.2004 0.9677 3.4783 15 7 6.5779 -0.1900 3.5332 16 14 8.6836 1.2835 4.5690 17 1 8.4084 2.4425 5.4555 18 1 8.9548 0.0804 5.3962 19 1 9.8671 1.5782 3.7219 20 6 4.2799 -0.0167 -0.0048 21 6 3.5806 -1.2065 0.0004 22 6 4.3255 -2.5166 0.0004 23 6 2.1973 -1.1988 -0.0005 24 6 1.4395 -2.5013 -0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6557 2.1312 -0.0004 29 1 3.2286 3.3093 -1.6399 30 1 4.4686 5.4319 -1.6324 31 1 6.2689 5.8091 0.0005 32 1 6.8440 4.0669 1.6364 33 1 6.8900 -0.8801 4.1393 34 1 5.3599 -0.0239 -0.0090 35 1 4.5053 -2.8322 -1.0273 36 1 5.2785 -2.3927 0.5145 37 1 3.7311 -3.2724 0.5138 38 1 1.2563 -2.8151 -1.0282 39 1 2.0262 -3.2630 0.5130 40 1 0.4877 -2.3679 0.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243583173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:17 Heat of formation + Delta-G solvation = 6.145590 kcal Electronic energy + Delta-G solvation = -21639.185421 eV Core-core repulsion = 18576.800873 eV Total energy + Delta-G solvation = -3062.384548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.57754 -38.56500 -36.35214 -33.43096 -33.10121 -32.27155 -29.85908 -28.88727 -27.87367 -26.17535 -25.50714 -25.19671 -22.01237 -21.40293 -20.06427 -19.47767 -17.95103 -16.87505 -15.59939 -15.40335 -14.70783 -14.52335 -14.42078 -14.08528 -13.75110 -13.56423 -13.28862 -12.95254 -12.64769 -12.53110 -12.37926 -12.32997 -12.08406 -12.05831 -11.69104 -11.39645 -11.13638 -11.06064 -10.97982 -10.84532 -10.66126 -10.46915 -10.26789 -10.24490 -9.32896 -8.85392 -8.41994 -7.90629 -7.66565 -7.05428 -6.45025 -4.03451 1.66781 2.04558 2.34896 2.44109 3.12480 3.13311 3.15668 3.95244 4.28645 4.61889 5.08746 5.17494 5.23776 5.27477 5.35675 5.46933 5.55448 5.64894 5.70972 5.76727 5.82252 5.88403 5.90533 6.01938 6.06093 6.07533 6.12495 6.26737 6.28613 6.33435 6.41955 6.69255 6.75713 6.77462 6.80137 7.04777 7.10458 7.19745 7.28678 7.30103 7.36552 7.49286 7.70929 7.81376 7.98547 8.99458 9.69393 10.71318 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.006693 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.051704 B = 4182.347665 C = 5885.921790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.011 4.011 5 C -0.132 4.132 6 C -0.062 4.062 7 C -0.216 4.216 8 C -0.071 4.071 9 C -0.235 4.235 10 C 0.164 3.836 11 O -0.163 6.163 12 C -0.396 4.396 13 H 0.090 0.910 14 C 0.043 3.957 15 N -0.854 5.854 16 Si 0.938 3.062 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.077 4.077 21 C -0.081 4.081 22 C -0.113 4.113 23 C -0.102 4.102 24 C -0.113 4.113 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.270 0.730 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -0.613 -6.887 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.138 4.138 4 C -0.011 4.011 5 C -0.133 4.133 6 C -0.080 4.080 7 C -0.235 4.235 8 C -0.090 4.090 9 C -0.254 4.254 10 C 0.109 3.891 11 O -0.065 6.065 12 C -0.472 4.472 13 H 0.108 0.892 14 C -0.162 4.162 15 N -0.488 5.488 16 Si 0.763 3.237 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.096 4.096 21 C -0.081 4.081 22 C -0.169 4.169 23 C -0.102 4.102 24 C -0.169 4.169 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.982 -1.086 -6.678 9.723 hybrid contribution 0.933 0.453 0.689 1.246 sum -6.048 -0.633 -5.989 8.535 Atomic orbital electron populations 1.20768 0.92036 1.02265 1.01529 1.19457 0.95190 0.92605 1.02279 1.20933 0.93197 0.96904 1.02743 1.18550 0.92230 0.92171 0.98106 1.17900 1.00477 0.95109 0.99864 1.20710 0.98165 0.92441 0.96656 1.20515 1.01432 0.98279 1.03254 1.20800 0.96170 0.97576 0.94410 1.21116 1.05390 0.94859 1.04034 1.19339 0.92250 0.88862 0.88666 1.83999 1.43697 1.37787 1.41006 1.21286 1.05889 1.01686 1.18327 0.89237 1.25242 0.98792 0.94596 0.97580 1.70045 1.38821 1.04143 1.35747 0.85831 0.80264 0.78177 0.79477 1.19560 1.20292 1.19542 1.21082 1.00047 0.90743 0.97681 1.19574 0.92793 0.95276 1.00427 1.20802 1.00592 0.94228 1.01285 1.19440 0.93043 0.94374 1.03360 1.20842 0.99682 0.94940 1.01480 0.91889 0.91640 0.92103 0.86786 0.86974 0.87550 0.87511 0.85443 0.92034 0.85881 0.92072 0.91034 0.91770 0.91948 0.91571 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.60 36.01 0.35 -1.05 16 2 C -0.10 -1.61 5.87 -104.67 -0.61 -2.22 16 3 C -0.12 -2.23 9.16 -39.23 -0.36 -2.59 16 4 C -0.01 -0.22 5.28 -104.90 -0.55 -0.78 16 5 C -0.13 -2.89 5.49 -104.73 -0.57 -3.46 16 6 C -0.06 -1.15 9.51 -39.28 -0.37 -1.53 16 7 C -0.22 -3.82 10.03 -39.59 -0.40 -4.21 16 8 C -0.07 -1.33 10.03 -39.55 -0.40 -1.72 16 9 C -0.23 -5.15 9.16 -39.43 -0.36 -5.51 16 10 C 0.16 3.98 6.56 -38.74 -0.25 3.73 16 11 O -0.16 -4.53 8.11 0.36 0.00 -4.53 16 12 C -0.40 -10.88 9.49 30.88 0.29 -10.59 16 13 H 0.09 2.29 5.21 -52.48 -0.27 2.02 16 14 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 15 N -0.85 -24.38 13.67 55.48 0.76 -23.62 16 16 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 C -0.08 -1.69 8.44 -39.24 -0.33 -2.02 16 21 C -0.08 -1.54 5.88 -104.67 -0.61 -2.15 16 22 C -0.11 -1.84 9.60 36.01 0.35 -1.49 16 23 C -0.10 -1.74 5.88 -104.55 -0.62 -2.36 16 24 C -0.11 -1.49 9.19 36.00 0.33 -1.16 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.76 5.93 -51.93 -0.31 0.45 16 27 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.11 1.93 8.04 -52.49 -0.42 1.50 16 29 H 0.11 1.82 8.04 -52.49 -0.42 1.39 16 30 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.12 2.91 7.69 -52.49 -0.40 2.51 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 37 H 0.06 0.93 5.93 -51.93 -0.31 0.62 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 40 H 0.06 0.75 5.93 -51.93 -0.31 0.44 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -30.07 330.66 -8.64 -38.71 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.14 Total: 7.20 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: -4.23 Total: -38.05 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.76 Total: -23.62 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.00 Total: -4.53 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.07 -8.64 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.855 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds