Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38003 * 119.93803 * 2 1 4 4 C 1.39382 * 119.87516 * 180.02562 * 3 2 1 5 5 C 1.48322 * 120.12497 * 179.97438 * 4 3 2 6 6 C 1.39434 * 120.05126 * 179.97438 * 5 4 3 7 7 C 1.37832 * 119.94999 * 179.97438 * 6 5 4 8 8 C 1.39001 * 120.05079 * 0.27552 * 7 6 5 9 9 O 1.35699 * 119.95339 * 179.72342 * 8 7 6 10 10 C 1.34817 * 116.99235 * 354.45527 * 9 8 7 11 11 H 1.07999 * 120.00629 * 5.06050 * 10 9 8 12 12 C 1.38653 * 119.99737 * 185.05211 * 10 9 8 13 13 N 1.31564 * 119.99978 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00013 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47204 * 60.00447 * 14 12 10 16 16 H 1.48503 * 109.46900 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46999 * 300.00085 * 14 12 10 18 18 C 1.39008 * 120.10410 * 359.44869 * 8 7 6 19 19 C 1.37838 * 120.04956 * 0.55139 * 18 8 7 20 20 C 1.39381 * 119.74856 * 0.24654 * 4 3 2 21 21 C 1.38003 * 119.87546 * 359.49618 * 20 4 3 22 22 C 1.50699 * 119.94256 * 180.25420 * 21 20 4 23 23 C 1.38331 * 120.12388 * 0.52681 * 21 20 4 24 24 C 1.50703 * 119.87848 * 179.72279 * 23 21 20 25 25 H 1.08996 * 109.46648 * 90.00964 * 1 2 3 26 26 H 1.09002 * 109.46793 * 210.00339 * 1 2 3 27 27 H 1.08991 * 109.46881 * 330.00380 * 1 2 3 28 28 H 1.07998 * 120.06664 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.02712 * 0.02562 * 6 5 4 30 30 H 1.08000 * 119.97967 * 180.02562 * 7 6 5 31 31 H 0.96992 * 119.99948 * 180.02562 * 13 12 10 32 32 H 1.07998 * 119.97698 * 180.25135 * 18 8 7 33 33 H 1.07995 * 120.02707 * 179.74388 * 19 18 8 34 34 H 1.08001 * 120.06282 * 179.73007 * 20 4 3 35 35 H 1.08999 * 109.47129 * 270.28019 * 22 21 20 36 36 H 1.09007 * 109.46693 * 30.27562 * 22 21 20 37 37 H 1.08997 * 109.47572 * 150.27143 * 22 21 20 38 38 H 1.08998 * 109.47192 * 269.98533 * 24 23 21 39 39 H 1.09000 * 109.46723 * 29.98171 * 24 23 21 40 40 H 1.08993 * 109.47466 * 149.98022 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1959 0.0000 4 6 3.5896 1.1944 -0.0005 5 6 4.3354 2.4764 -0.0011 6 6 5.7297 2.4731 -0.0011 7 6 6.4207 3.6657 -0.0022 8 6 5.7286 4.8712 0.0025 9 8 6.4108 6.0441 0.0071 10 6 7.7521 5.9714 0.1230 11 1 8.2427 5.0093 0.1244 12 6 8.5017 7.1320 0.2400 13 7 7.9040 8.3041 0.2385 14 14 10.3601 7.0314 0.3998 15 1 10.9242 6.3593 -0.7982 16 1 10.9223 8.4014 0.5100 17 1 10.7110 6.2535 1.6150 18 6 4.3385 4.8771 -0.0033 19 6 3.6432 3.6869 -0.0022 20 6 4.2798 -0.0165 -0.0063 21 6 3.5807 -1.2063 -0.0009 22 6 4.3255 -2.5164 -0.0013 23 6 2.1974 -1.1988 -0.0008 24 6 1.4396 -2.5014 -0.0012 25 1 -0.3632 -0.0002 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6558 2.1312 0.0004 29 1 6.2679 1.5367 -0.0011 30 1 7.5007 3.6637 -0.0026 31 1 8.4284 9.1159 0.3200 32 1 3.8029 5.8148 -0.0037 33 1 2.5633 3.6919 -0.0025 34 1 5.3598 -0.0236 -0.0111 35 1 4.5052 -2.8319 -1.0290 36 1 5.2788 -2.3925 0.5126 37 1 3.7316 -3.2723 0.5124 38 1 1.2565 -2.8149 -1.0289 39 1 2.0263 -3.2632 0.5121 40 1 0.4878 -2.3682 0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = 4.819661 kcal Electronic energy + Delta-G solvation = -20583.020936 eV Core-core repulsion = 17520.578891 eV Total energy + Delta-G solvation = -3062.442045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85604 -38.84379 -36.62924 -33.57940 -33.43258 -32.26341 -30.35904 -29.23887 -28.10068 -26.64880 -25.82987 -24.99757 -22.13647 -21.89872 -20.27335 -19.62125 -18.04298 -17.19263 -15.93236 -15.76910 -15.00376 -14.56432 -14.52881 -14.31769 -13.70122 -13.55200 -13.42008 -13.32032 -13.16074 -12.91745 -12.72807 -12.42663 -12.39738 -12.27261 -12.03284 -11.73281 -11.53316 -11.32859 -11.18457 -10.99655 -10.76619 -10.58352 -10.50032 -10.35629 -9.38469 -9.02491 -8.44385 -8.40192 -8.26648 -6.92461 -6.53266 -4.09963 1.21425 1.56541 2.19215 2.51363 3.09336 3.10785 3.13309 3.90273 3.93356 4.64732 4.79404 4.84869 4.97478 5.03026 5.08611 5.10251 5.20398 5.36892 5.43103 5.46850 5.54488 5.56221 5.61636 5.67010 5.74838 5.76525 5.81249 5.88101 5.92586 6.11916 6.20196 6.35495 6.38848 6.55872 6.68172 6.72621 6.81338 6.88154 7.01336 7.15564 7.31082 7.34701 7.40014 7.74598 7.91768 8.91804 9.60474 10.64089 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.003238 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.936145 B = 8646.490540 C = 9471.706638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 C -0.133 4.133 4 C 0.004 3.996 5 C -0.160 4.160 6 C -0.053 4.053 7 C -0.236 4.236 8 C 0.159 3.841 9 O -0.170 6.170 10 C -0.393 4.393 11 H 0.094 0.906 12 C 0.040 3.960 13 N -0.859 5.859 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.193 4.193 19 C -0.057 4.057 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.114 4.114 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.272 0.728 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -17.781 -0.288 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C -0.151 4.151 4 C 0.004 3.996 5 C -0.160 4.160 6 C -0.071 4.071 7 C -0.255 4.255 8 C 0.104 3.896 9 O -0.073 6.073 10 C -0.469 4.469 11 H 0.111 0.889 12 C -0.165 4.165 13 N -0.492 5.492 14 Si 0.767 3.233 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.194 1.194 18 C -0.213 4.213 19 C -0.075 4.075 20 C -0.151 4.151 21 C -0.078 4.078 22 C -0.171 4.171 23 C -0.113 4.113 24 C -0.170 4.170 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.600 -17.260 -0.287 19.753 hybrid contribution 1.060 0.076 0.052 1.064 sum -8.540 -17.184 -0.235 19.191 Atomic orbital electron populations 1.20832 0.91723 1.02518 1.02049 1.19578 0.95508 0.92540 1.00225 1.21023 0.93460 0.97296 1.03311 1.18779 0.92572 0.92381 0.95917 1.18241 0.92781 0.91273 1.13744 1.20821 0.92918 0.96966 0.96410 1.21098 1.00653 0.91863 1.11862 1.19490 0.91654 0.86453 0.91974 1.83956 1.21016 1.25121 1.77183 1.21345 0.78487 0.94868 1.52183 0.88889 1.25332 1.00712 0.94138 0.96289 1.70028 1.36643 0.97585 1.44993 0.85754 0.80242 0.78018 0.79306 1.19383 1.20181 1.19381 1.20151 0.91461 0.98094 1.11558 1.20711 0.98399 0.91110 0.97315 1.21026 0.99606 0.91185 1.03276 1.19576 0.93036 0.95014 1.00215 1.20833 0.99797 0.94454 1.02049 1.19445 0.92969 0.94561 1.04369 1.20849 0.99749 0.94620 1.01810 0.91442 0.91458 0.91760 0.86109 0.87131 0.85307 0.91782 0.86257 0.86699 0.86150 0.91443 0.91774 0.91448 0.91736 0.91664 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.60 36.01 0.35 -0.76 16 2 C -0.08 -1.01 5.88 -104.67 -0.61 -1.62 16 3 C -0.13 -1.94 9.08 -39.24 -0.36 -2.30 16 4 C 0.00 0.06 5.88 -104.90 -0.62 -0.56 16 5 C -0.16 -2.93 5.88 -104.86 -0.62 -3.54 16 6 C -0.05 -1.00 9.42 -39.28 -0.37 -1.37 16 7 C -0.24 -5.12 9.15 -39.45 -0.36 -5.48 16 8 C 0.16 3.84 6.65 -39.01 -0.26 3.58 16 9 O -0.17 -4.82 9.75 0.24 0.00 -4.81 16 10 C -0.39 -10.84 9.48 30.89 0.29 -10.55 16 11 H 0.09 2.36 5.19 -52.49 -0.27 2.09 16 12 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 13 N -0.86 -24.84 13.67 55.48 0.76 -24.09 16 14 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 C -0.19 -4.10 9.98 -39.44 -0.39 -4.49 16 19 C -0.06 -1.06 9.42 -39.28 -0.37 -1.43 16 20 C -0.13 -1.96 9.08 -39.24 -0.36 -2.32 16 21 C -0.08 -1.01 5.87 -104.67 -0.61 -1.63 16 22 C -0.11 -1.12 9.60 36.01 0.35 -0.78 16 23 C -0.11 -1.40 5.88 -104.55 -0.62 -2.01 16 24 C -0.11 -1.03 9.19 36.01 0.33 -0.70 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.55 5.93 -51.93 -0.31 0.24 16 27 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.12 1.62 6.20 -52.49 -0.33 1.30 16 29 H 0.11 1.79 6.20 -52.49 -0.33 1.46 16 30 H 0.13 2.77 5.62 -52.49 -0.30 2.47 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.12 1.78 6.20 -52.49 -0.33 1.45 16 34 H 0.12 1.66 6.20 -52.49 -0.33 1.33 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.07 0.56 5.93 -51.93 -0.31 0.25 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.52 5.93 -51.93 -0.31 0.21 16 40 H 0.06 0.52 5.93 -51.93 -0.31 0.21 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -30.39 326.11 -8.44 -38.83 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.77 Total: 4.95 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: -4.33 Total: -34.95 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.76 Total: -24.09 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.81 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.39 -8.44 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.654 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds