Wall clock time and date at job start Tue Mar 31 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47051 * 2 1 4 4 C 1.50698 * 109.47062 * 120.00240 * 2 1 3 5 5 C 1.38355 * 119.94162 * 300.27329 * 4 2 1 6 6 C 1.38307 * 120.25322 * 180.28169 * 5 4 2 7 7 C 1.38026 * 120.12224 * 359.44393 * 6 5 4 8 8 C 1.39356 * 119.87648 * 0.27908 * 7 6 5 9 9 C 1.48320 * 120.12524 * 179.97438 * 8 7 6 10 10 C 1.39443 * 120.05499 * 179.72291 * 9 8 7 11 11 C 1.37829 * 119.94949 * 179.74066 * 10 9 8 12 12 C 1.39003 * 120.05407 * 0.55861 * 11 10 9 13 13 O 1.35689 * 119.95119 * 179.72233 * 12 11 10 14 14 C 1.34817 * 117.00368 * 174.42741 * 13 12 11 15 15 H 1.07998 * 119.99669 * 5.05097 * 14 13 12 16 16 C 1.38650 * 120.00129 * 185.05608 * 14 13 12 17 17 N 1.31550 * 119.99991 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99756 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47086 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47087 * 119.99798 * 18 16 14 21 21 H 1.48503 * 109.47136 * 239.99790 * 18 16 14 22 22 C 1.39003 * 120.09947 * 359.69345 * 12 11 10 23 23 C 1.37835 * 120.05406 * 0.02562 * 22 12 11 24 24 C 1.37988 * 119.93705 * 120.00296 * 4 2 1 25 25 H 1.09003 * 109.47450 * 59.99587 * 1 2 3 26 26 H 1.09000 * 109.47215 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47076 * 299.99495 * 1 2 3 28 28 H 1.09004 * 109.46625 * 240.00218 * 2 1 3 29 29 H 1.08999 * 109.46870 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47211 * 300.00249 * 3 2 1 31 31 H 1.08994 * 109.46805 * 60.00234 * 3 2 1 32 32 H 1.08007 * 119.87019 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.93411 * 179.72246 * 6 5 4 34 34 H 1.08005 * 120.06157 * 180.29900 * 7 6 5 35 35 H 1.08004 * 120.01956 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.97600 * 180.27422 * 11 10 9 37 37 H 0.97008 * 119.99950 * 180.02562 * 17 16 14 38 38 H 1.08000 * 119.97095 * 180.02562 * 22 12 11 39 39 H 1.08006 * 120.02565 * 180.02562 * 23 22 12 40 40 H 1.08001 * 120.05932 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6926 -0.2401 2.4864 6 6 2.1548 -0.8837 3.6200 7 6 2.9489 -2.0067 3.5038 8 6 3.2895 -2.4884 2.2413 9 6 4.1429 -3.6943 2.1100 10 6 4.4781 -4.1784 0.8459 11 6 5.2757 -5.2961 0.7264 12 6 5.7364 -5.9475 1.8647 13 8 6.5169 -7.0510 1.7445 14 6 7.0253 -7.5679 2.8812 15 1 6.7399 -7.1544 3.8372 16 6 7.9144 -8.6301 2.8227 17 7 8.2616 -9.1339 1.6582 18 14 8.6193 -9.3457 4.3977 19 1 8.0749 -8.6060 5.5646 20 1 8.2450 -10.7791 4.5011 21 1 10.0990 -9.2206 4.3794 22 6 5.3993 -5.4699 3.1258 23 6 4.6067 -4.3491 3.2503 24 6 2.8256 -1.8322 1.1023 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.0675 0.6355 2.5820 33 1 1.8902 -0.5095 4.5979 34 1 3.3053 -2.5113 4.3897 35 1 4.1161 -3.6756 -0.0387 36 1 5.5392 -5.6688 -0.2524 37 1 8.8834 -9.8774 1.6173 38 1 5.7587 -5.9774 4.0087 39 1 4.3454 -3.9782 4.2304 40 1 3.0868 -2.2008 0.1213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:39 Heat of formation + Delta-G solvation = 2.614830 kcal Electronic energy + Delta-G solvation = -20472.468379 eV Core-core repulsion = 17409.930725 eV Total energy + Delta-G solvation = -3062.537654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.72821 -38.79828 -36.70447 -35.16176 -32.47644 -31.38653 -30.63492 -29.59544 -27.59572 -27.28686 -25.43896 -23.53279 -22.84969 -21.54507 -20.92791 -19.29345 -18.08562 -17.31508 -16.47026 -15.60083 -15.16097 -14.65007 -14.45132 -14.18678 -13.82115 -13.75627 -13.61552 -13.57381 -13.41616 -12.88004 -12.60949 -12.44318 -12.28635 -11.91877 -11.75586 -11.56232 -11.46546 -11.23266 -11.12384 -10.93463 -10.82584 -10.51471 -10.47440 -10.35928 -9.38890 -9.13863 -8.65892 -8.54121 -8.28157 -6.96781 -6.54598 -4.11111 1.21696 1.57301 2.17959 2.52770 3.08105 3.09448 3.15038 3.89526 3.97885 4.59484 4.63610 4.72547 5.01604 5.05435 5.08257 5.13040 5.16921 5.27434 5.36001 5.45746 5.52068 5.59130 5.65694 5.66338 5.69560 5.76490 5.84534 6.03080 6.09239 6.10965 6.18474 6.25773 6.30869 6.54469 6.67863 6.70430 6.74496 6.86734 7.00225 7.13596 7.28498 7.33331 7.38407 7.73193 7.90709 8.90784 9.59393 10.62865 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.037981 B = 0.003033 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.042616 B = 9228.193105 C = 9772.945518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.071 4.071 5 C -0.139 4.139 6 C -0.112 4.112 7 C -0.136 4.136 8 C 0.004 3.996 9 C -0.161 4.161 10 C -0.057 4.057 11 C -0.193 4.193 12 C 0.160 3.840 13 O -0.171 6.171 14 C -0.392 4.392 15 H 0.095 0.905 16 C 0.040 3.960 17 N -0.858 5.858 18 Si 0.943 3.057 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.236 4.236 23 C -0.053 4.053 24 C -0.129 4.129 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.271 0.729 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.652 16.054 0.345 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.071 4.071 5 C -0.158 4.158 6 C -0.130 4.130 7 C -0.154 4.154 8 C 0.004 3.996 9 C -0.162 4.162 10 C -0.075 4.075 11 C -0.213 4.213 12 C 0.105 3.895 13 O -0.073 6.073 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.492 5.492 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.255 4.255 23 C -0.071 4.071 24 C -0.147 4.147 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.408 15.704 0.058 19.410 hybrid contribution 0.395 -0.424 0.893 1.065 sum -11.013 15.279 0.951 18.859 Atomic orbital electron populations 1.21846 0.94536 1.02014 1.01597 1.20117 0.95793 0.95951 0.95701 1.21842 1.01337 0.95213 1.01595 1.19694 0.97510 0.95505 0.94427 1.20807 1.02178 1.00744 0.92023 1.20971 0.98004 0.95871 0.98115 1.21186 0.99959 0.97239 0.97045 1.18822 0.94548 0.93458 0.92741 1.18248 1.06133 0.98291 0.93555 1.20711 0.95938 0.94859 0.95987 1.20153 1.05337 0.98690 0.97095 1.19488 0.90242 0.86648 0.93145 1.83952 1.54688 1.34154 1.34505 1.21442 1.25377 1.15470 0.84486 0.88772 1.25338 0.96050 0.96169 0.98967 1.70047 1.31520 1.23619 1.23993 0.85617 0.78885 0.78970 0.79802 1.18988 1.20030 1.20026 1.21107 1.06049 1.00547 0.97787 1.20828 0.95186 0.94084 0.96978 1.21087 0.99396 0.95916 0.98287 0.92634 0.92500 0.92566 0.90573 0.92495 0.92634 0.92568 0.86883 0.86607 0.86166 0.86705 0.86247 0.91875 0.85281 0.87082 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.00 37.16 0.33 -0.88 16 2 C -0.06 -0.56 3.09 -91.77 -0.28 -0.84 16 3 C -0.14 -1.22 9.01 37.16 0.33 -0.89 16 4 C -0.07 -0.87 4.78 -104.67 -0.50 -1.37 16 5 C -0.14 -1.63 8.71 -39.51 -0.34 -1.98 16 6 C -0.11 -1.37 10.03 -39.63 -0.40 -1.77 16 7 C -0.14 -1.94 9.43 -39.24 -0.37 -2.31 16 8 C 0.00 0.07 5.88 -104.90 -0.62 -0.55 16 9 C -0.16 -2.91 5.88 -104.86 -0.62 -3.53 16 10 C -0.06 -1.03 9.42 -39.28 -0.37 -1.40 16 11 C -0.19 -4.07 9.98 -39.45 -0.39 -4.46 16 12 C 0.16 3.82 6.65 -39.01 -0.26 3.56 16 13 O -0.17 -4.80 9.75 0.27 0.00 -4.80 16 14 C -0.39 -10.76 9.48 30.88 0.29 -10.46 16 15 H 0.09 2.39 5.19 -52.49 -0.27 2.12 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 18 Si 0.94 20.13 29.55 -169.99 -5.02 15.10 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.24 -5.09 9.15 -39.45 -0.36 -5.45 16 23 C -0.05 -0.98 9.42 -39.28 -0.37 -1.35 16 24 C -0.13 -1.82 9.05 -39.24 -0.36 -2.18 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 28 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 7.40 -51.93 -0.38 0.07 16 32 H 0.11 1.09 7.09 -52.48 -0.37 0.72 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.58 6.20 -52.48 -0.33 1.26 16 35 H 0.12 1.75 6.20 -52.48 -0.33 1.42 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.13 2.76 5.62 -52.49 -0.30 2.47 16 39 H 0.11 1.76 6.20 -52.48 -0.33 1.44 16 40 H 0.12 1.58 6.09 -52.49 -0.32 1.26 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -29.77 330.95 -8.73 -38.49 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.08 Total: 5.06 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -4.37 Total: -34.88 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.00 Total: -4.80 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.77 -8.73 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.108 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds