Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47304 * 2 1 4 4 C 1.38355 * 119.87313 * 90.00061 * 3 2 1 5 5 C 1.37986 * 120.12182 * 179.97438 * 4 3 2 6 6 C 1.39398 * 119.87388 * 0.02562 * 5 4 3 7 7 C 1.48329 * 120.12251 * 179.97438 * 6 5 4 8 8 C 1.39434 * 120.04910 * 130.22553 * 7 6 5 9 9 C 1.37843 * 119.94453 * 180.30159 * 8 7 6 10 10 C 1.38997 * 120.04997 * 359.45164 * 9 8 7 11 11 O 1.35693 * 119.94562 * 180.28008 * 10 9 8 12 12 C 1.34823 * 116.99985 * 354.44778 * 11 10 9 13 13 H 1.07997 * 120.00255 * 5.05981 * 12 11 10 14 14 C 1.38649 * 119.99790 * 185.05748 * 12 11 10 15 15 N 1.31562 * 120.00346 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99849 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47386 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47645 * 120.00321 * 16 14 12 19 19 H 1.48504 * 109.47080 * 240.00011 * 16 14 12 20 20 C 1.38993 * 120.10551 * 0.29606 * 10 9 8 21 21 C 1.37832 * 120.05523 * 359.97438 * 20 10 9 22 22 C 1.39356 * 119.75191 * 0.27394 * 6 5 4 23 23 C 1.50700 * 120.06138 * 179.73307 * 22 6 5 24 24 C 1.38026 * 119.87431 * 359.44597 * 22 6 5 25 25 H 1.09001 * 109.46962 * 59.99908 * 1 2 3 26 26 H 1.08992 * 109.47590 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47459 * 300.00275 * 1 2 3 28 28 H 1.08999 * 109.47169 * 240.00416 * 2 1 3 29 29 H 1.09001 * 109.46962 * 120.00092 * 2 1 3 30 30 H 1.07996 * 119.93603 * 359.95549 * 4 3 2 31 31 H 1.08001 * 120.06202 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.02994 * 0.04242 * 8 7 6 33 33 H 1.08000 * 119.96886 * 179.72664 * 9 8 7 34 34 H 0.96996 * 120.00279 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.97292 * 180.02562 * 20 10 9 36 36 H 1.07997 * 120.03181 * 179.97438 * 21 20 10 37 37 H 1.08996 * 109.47688 * 89.99801 * 23 22 6 38 38 H 1.09009 * 109.46968 * 209.99827 * 23 22 6 39 39 H 1.09007 * 109.47207 * 329.99073 * 23 22 6 40 40 H 1.07998 * 119.94073 * 180.27614 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0705 1.1997 5 6 2.7226 3.3713 1.2057 6 6 2.9558 4.0308 0.0000 7 6 3.4502 5.4293 0.0000 8 6 4.5518 5.7804 -0.7795 9 6 5.0133 7.0792 -0.7730 10 6 4.3745 8.0410 0.0008 11 8 4.8272 9.3202 0.0011 12 6 5.9656 9.5668 -0.6777 13 1 6.4297 8.7823 -1.2569 14 6 6.5406 10.8277 -0.6322 15 7 5.9755 11.7833 0.0737 16 14 8.1175 11.1695 -1.5733 17 1 8.5478 9.9378 -2.2824 18 1 7.8798 12.2525 -2.5611 19 1 9.1793 11.5900 -0.6240 20 6 3.2731 7.6946 0.7745 21 6 2.8113 6.3959 0.7757 22 6 2.7166 3.3735 -1.2053 23 6 2.9606 4.0820 -2.5129 24 6 2.2615 2.0705 -1.1993 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 2.0803 1.5588 2.1332 31 1 2.9020 3.8774 2.1428 32 1 5.0456 5.0343 -1.3845 33 1 5.8692 7.3506 -1.3732 34 1 6.3779 12.6653 0.1058 35 1 2.7781 8.4437 1.3747 36 1 1.9557 6.1270 1.3773 37 1 3.9881 3.9098 -2.8333 38 1 2.2752 3.6971 -3.2681 39 1 2.7948 5.1515 -2.3831 40 1 2.0801 1.5586 -2.1328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -0.319794 kcal Electronic energy + Delta-G solvation = -20649.490241 eV Core-core repulsion = 17586.825332 eV Total energy + Delta-G solvation = -3062.664908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78414 -38.73026 -36.57638 -34.36834 -32.34336 -32.29504 -30.45775 -30.16210 -27.77613 -26.61024 -25.43423 -23.74338 -22.26226 -21.54276 -21.10073 -19.76777 -18.01433 -17.14574 -16.15565 -15.59096 -15.07649 -14.62706 -14.47634 -13.94285 -13.89229 -13.80992 -13.57986 -13.50308 -13.14989 -12.91854 -12.73916 -12.57590 -12.20376 -12.02203 -11.76598 -11.52489 -11.33711 -11.25200 -11.23051 -10.92396 -10.77301 -10.58948 -10.45311 -10.38650 -9.39249 -8.94139 -8.61201 -8.34717 -8.23208 -7.06500 -6.50599 -4.08332 1.33784 1.56258 2.19932 2.37559 3.09529 3.11202 3.16700 3.89029 3.92589 4.53609 4.71367 4.81235 5.03762 5.08407 5.11543 5.17857 5.22714 5.25048 5.39685 5.45940 5.57166 5.63021 5.69470 5.74760 5.76777 5.84380 5.92463 6.01823 6.05455 6.14565 6.24530 6.29416 6.41606 6.50654 6.69279 6.71886 6.83021 6.89608 7.01233 7.14125 7.29341 7.34659 7.39594 7.76491 7.94670 8.95030 9.64377 10.67174 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039749 B = 0.003153 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.251251 B = 8877.894610 C = 9257.884955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.097 4.097 4 C -0.122 4.122 5 C -0.112 4.112 6 C -0.013 4.013 7 C -0.157 4.157 8 C -0.051 4.051 9 C -0.236 4.236 10 C 0.159 3.841 11 O -0.174 6.174 12 C -0.392 4.392 13 H 0.094 0.906 14 C 0.039 3.961 15 N -0.860 5.860 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.194 4.194 21 C -0.057 4.057 22 C -0.081 4.081 23 C -0.115 4.115 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.270 0.730 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -18.641 -1.483 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.140 4.140 5 C -0.130 4.130 6 C -0.013 4.013 7 C -0.158 4.158 8 C -0.070 4.070 9 C -0.255 4.255 10 C 0.104 3.896 11 O -0.077 6.077 12 C -0.468 4.468 13 H 0.111 0.889 14 C -0.165 4.165 15 N -0.495 5.495 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.213 4.213 21 C -0.075 4.075 22 C -0.081 4.081 23 C -0.172 4.172 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.768 -18.159 -1.334 19.425 hybrid contribution 0.842 0.188 -0.422 0.960 sum -5.926 -17.971 -1.756 19.004 Atomic orbital electron populations 1.21747 0.95021 1.01310 1.02263 1.20487 0.95960 0.93036 1.02381 1.19784 1.00690 0.96062 0.93212 1.20859 1.01048 0.94998 0.97136 1.21233 0.99763 0.94433 0.97614 1.18733 0.97307 0.93102 0.92139 1.18185 1.00644 0.91638 1.05303 1.20803 0.94614 0.95202 0.96341 1.21102 1.04781 0.93414 1.06228 1.19462 0.92567 0.85218 0.92341 1.83960 1.38747 1.20668 1.64308 1.21408 0.99777 0.97908 1.27670 0.88874 1.25316 0.99313 0.94599 0.97305 1.70047 1.38896 1.02836 1.37675 0.85634 0.79909 0.78965 0.78859 1.19035 1.20086 1.20085 1.20139 0.99754 0.96536 1.04886 1.20656 0.97988 0.91867 0.97008 1.19962 0.99167 0.93962 0.94989 1.20882 1.01425 1.01387 0.93476 1.20750 1.01330 0.94246 0.97199 0.92600 0.92725 0.92591 0.91417 0.91384 0.86645 0.86114 0.87310 0.85382 0.91967 0.86364 0.86976 0.91433 0.92319 0.90479 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.15 0.37 -0.81 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.10 -1.14 5.14 -104.55 -0.54 -1.68 16 4 C -0.12 -1.50 9.68 -39.63 -0.38 -1.88 16 5 C -0.11 -1.58 9.51 -39.24 -0.37 -1.96 16 6 C -0.01 -0.20 5.47 -104.90 -0.57 -0.77 16 7 C -0.16 -2.77 4.73 -104.85 -0.50 -3.27 16 8 C -0.05 -0.95 7.90 -39.28 -0.31 -1.26 16 9 C -0.24 -5.06 9.15 -39.44 -0.36 -5.42 16 10 C 0.16 3.78 6.65 -39.02 -0.26 3.52 16 11 O -0.17 -4.91 9.75 0.25 0.00 -4.90 16 12 C -0.39 -10.79 9.48 30.88 0.29 -10.50 16 13 H 0.09 2.38 5.19 -52.49 -0.27 2.10 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 16 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 C -0.19 -4.07 9.98 -39.45 -0.39 -4.47 16 21 C -0.06 -1.03 9.50 -39.28 -0.37 -1.41 16 22 C -0.08 -1.14 5.87 -104.28 -0.61 -1.75 16 23 C -0.12 -1.50 8.45 36.01 0.30 -1.19 16 24 C -0.12 -1.46 9.34 -39.63 -0.37 -1.83 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.61 8.04 -52.49 -0.42 1.18 16 32 H 0.11 1.77 6.85 -52.48 -0.36 1.41 16 33 H 0.13 2.74 5.62 -52.49 -0.30 2.45 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 36 H 0.11 1.76 8.04 -52.49 -0.42 1.33 16 37 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 38 H 0.06 0.65 8.09 -51.92 -0.42 0.23 16 39 H 0.08 1.14 6.46 -51.92 -0.34 0.80 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -29.76 335.45 -8.98 -38.74 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.43 Total: 4.66 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: -4.34 Total: -34.59 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.76 Total: -24.20 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: 0.00 Total: -4.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.76 -8.98 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.422 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds