Wall clock time and date at job start Tue Mar 31 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47522 * 2 1 4 4 C 1.50710 * 109.46971 * 119.99812 * 2 1 3 5 5 C 1.38025 * 120.06194 * 300.02275 * 4 2 1 6 6 C 1.38305 * 120.12602 * 179.97438 * 5 4 2 7 7 C 1.38353 * 120.25270 * 0.04982 * 6 5 4 8 8 C 1.37990 * 120.12227 * 359.67003 * 7 6 5 9 9 C 1.39355 * 120.06503 * 119.99999 * 4 2 1 10 10 C 1.48323 * 120.12283 * 0.02562 * 9 4 2 11 11 C 1.39437 * 120.05202 * 130.00087 * 10 9 4 12 12 C 1.37835 * 119.94712 * 179.97438 * 11 10 9 13 13 C 1.38999 * 120.05352 * 359.97438 * 12 11 10 14 14 O 1.35702 * 119.94744 * 179.97438 * 13 12 11 15 15 C 1.34814 * 116.99765 * 354.45435 * 14 13 12 16 16 H 1.08000 * 120.00335 * 5.05115 * 15 14 13 17 17 C 1.38653 * 119.99613 * 185.05873 * 15 14 13 18 18 N 1.31560 * 119.99748 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00029 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47040 * 90.00420 * 19 17 15 21 21 H 1.48503 * 109.47081 * 210.00456 * 19 17 15 22 22 H 1.48503 * 109.47418 * 330.00423 * 19 17 15 23 23 C 1.38998 * 120.10263 * 0.02562 * 13 12 11 24 24 C 1.37830 * 120.05582 * 0.02562 * 23 13 12 25 25 H 1.09005 * 109.47551 * 300.00694 * 1 2 3 26 26 H 1.09004 * 109.46967 * 60.00016 * 1 2 3 27 27 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47592 * 239.99217 * 2 1 3 29 29 H 1.09004 * 109.46784 * 59.99320 * 3 2 1 30 30 H 1.08998 * 109.47369 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46592 * 299.99965 * 3 2 1 32 32 H 1.08008 * 119.94007 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.87684 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.94066 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.06357 * 180.31968 * 8 7 6 36 36 H 1.07996 * 120.02346 * 0.25614 * 11 10 9 37 37 H 1.07999 * 119.97168 * 179.97438 * 12 11 10 38 38 H 0.97000 * 119.99658 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.96901 * 179.97438 * 23 13 12 40 40 H 1.08001 * 120.02921 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6992 -0.2402 2.4848 6 6 2.1590 -0.8914 3.6150 7 6 2.9556 -2.0163 3.4957 8 6 3.2902 -2.4987 2.2469 9 6 2.8335 -1.8436 1.1043 10 6 3.1949 -2.3536 -0.2407 11 6 4.5260 -2.6346 -0.5466 12 6 4.8593 -3.1090 -1.7971 13 6 3.8697 -3.3079 -2.7527 14 8 4.2003 -3.7746 -3.9833 15 6 5.5139 -3.9155 -4.2518 16 1 6.2454 -3.7392 -3.4770 17 6 5.9258 -4.2867 -5.5226 18 7 7.2077 -4.4237 -5.7848 19 14 4.6605 -4.5921 -6.8625 20 1 4.3934 -3.3250 -7.5892 21 1 5.1812 -5.6075 -7.8128 22 1 3.4010 -5.0867 -6.2506 23 6 2.5421 -3.0286 -2.4501 24 6 2.2040 -2.5530 -1.2014 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.0783 0.6380 2.5839 33 1 1.8956 -0.5202 4.5944 34 1 3.3122 -2.5207 4.3816 35 1 3.9078 -3.3799 2.1549 36 1 5.2945 -2.4849 0.1972 37 1 5.8902 -3.3263 -2.0345 38 1 7.4958 -4.6837 -6.6738 39 1 1.7750 -3.1835 -3.1944 40 1 1.1724 -2.3357 -0.9669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:46 Heat of formation + Delta-G solvation = 8.197648 kcal Electronic energy + Delta-G solvation = -21206.784736 eV Core-core repulsion = 18144.489171 eV Total energy + Delta-G solvation = -3062.295564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.98181 -38.83378 -36.53339 -35.30021 -32.54435 -31.63455 -30.35112 -29.72266 -27.90801 -27.11321 -25.30063 -23.51251 -22.66143 -21.74863 -20.44273 -19.79341 -17.96716 -17.41535 -16.58818 -15.56091 -15.15545 -14.84384 -14.24815 -14.03724 -13.90142 -13.86037 -13.80006 -13.45193 -13.34221 -12.76373 -12.53511 -12.33251 -12.31520 -12.12696 -11.96066 -11.72743 -11.47988 -11.11030 -11.01506 -10.79530 -10.78824 -10.50880 -10.26586 -10.17639 -9.46257 -9.00204 -8.69612 -8.53834 -8.31031 -7.21034 -6.47577 -4.13522 1.30809 1.51512 2.07757 2.27652 3.18635 3.22437 3.36650 3.89155 4.18904 4.43308 4.75920 4.79202 4.87467 5.02846 5.04582 5.13696 5.19844 5.26308 5.46560 5.54119 5.56062 5.59852 5.64225 5.67783 5.83112 5.90051 6.01275 6.06842 6.13672 6.15708 6.22929 6.28326 6.30724 6.46510 6.60153 6.63112 6.72068 6.84662 6.94726 7.16352 7.19697 7.26056 7.53339 7.74091 7.97286 8.87207 9.48771 10.59690 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025998 B = 0.004008 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.727405 B = 6984.271261 C = 7566.352709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.140 4.140 4 C -0.071 4.071 5 C -0.115 4.115 6 C -0.133 4.133 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.010 4.010 10 C -0.148 4.148 11 C -0.055 4.055 12 C -0.222 4.222 13 C 0.164 3.836 14 O -0.213 6.213 15 C -0.391 4.391 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.876 5.876 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.194 4.194 24 C -0.060 4.060 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.280 0.720 39 H 0.119 0.881 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.865 7.657 14.071 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.071 4.071 5 C -0.133 4.133 6 C -0.152 4.152 7 C -0.142 4.142 8 C -0.133 4.133 9 C -0.010 4.010 10 C -0.148 4.148 11 C -0.073 4.073 12 C -0.241 4.241 13 C 0.111 3.889 14 O -0.117 6.117 15 C -0.466 4.466 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.513 5.513 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.213 4.213 24 C -0.078 4.078 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.815 7.524 13.682 18.994 hybrid contribution -0.143 -0.182 -0.482 0.535 sum -10.959 7.342 13.201 18.662 Atomic orbital electron populations 1.21846 0.94731 1.01778 1.01526 1.20423 0.95516 0.96105 0.97084 1.21817 1.01377 0.95269 1.01306 1.19897 0.97687 0.94993 0.94543 1.20837 1.00572 0.99960 0.91938 1.21041 0.99351 0.96661 0.98104 1.21012 0.99123 0.96968 0.97147 1.21258 1.00450 0.99882 0.91737 1.18743 0.95967 0.93792 0.92547 1.18251 0.93609 1.09893 0.93094 1.20818 0.94583 0.96183 0.95714 1.21213 1.00610 1.08276 0.93997 1.19207 0.93007 0.91222 0.85437 1.83554 1.28299 1.72165 1.27719 1.20796 0.78851 1.48036 0.98927 0.87501 1.24482 0.96434 0.95695 0.97326 1.69646 1.13700 1.45036 1.22967 0.86180 0.81630 0.78602 0.80508 1.19804 1.20708 1.18306 1.20140 0.94058 1.09212 0.97896 1.20701 0.97948 0.97204 0.91948 0.92859 0.92454 0.92636 0.88312 0.93016 0.92558 0.92545 0.86566 0.86713 0.86528 0.86103 0.87102 0.84750 0.90944 0.86319 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.84 37.16 0.33 -1.15 16 2 C -0.07 -0.91 2.25 -91.77 -0.21 -1.11 16 3 C -0.14 -1.58 9.01 37.16 0.33 -1.24 16 4 C -0.07 -0.95 4.77 -104.28 -0.50 -1.45 16 5 C -0.12 -1.35 8.71 -39.63 -0.35 -1.69 16 6 C -0.13 -1.49 10.04 -39.51 -0.40 -1.89 16 7 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 8 C -0.12 -1.57 9.51 -39.24 -0.37 -1.94 16 9 C -0.01 -0.16 5.47 -104.90 -0.57 -0.73 16 10 C -0.15 -2.49 4.92 -104.85 -0.52 -3.01 16 11 C -0.05 -0.99 9.51 -39.28 -0.37 -1.37 16 12 C -0.22 -4.70 9.15 -39.45 -0.36 -5.06 16 13 C 0.16 3.70 6.65 -39.02 -0.26 3.44 16 14 O -0.21 -5.51 8.58 0.24 0.00 -5.51 16 15 C -0.39 -10.83 9.94 30.89 0.31 -10.52 16 16 H 0.11 3.02 5.42 -52.49 -0.28 2.74 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -24.96 13.96 55.48 0.77 -24.19 16 19 Si 0.91 21.32 28.62 -169.99 -4.86 16.46 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 23 C -0.19 -3.74 9.98 -39.45 -0.39 -4.14 16 24 C -0.06 -1.01 7.35 -39.28 -0.29 -1.30 16 25 H 0.05 0.50 7.39 -51.93 -0.38 0.11 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.59 7.61 -51.93 -0.40 0.19 16 28 H 0.10 1.41 4.59 -51.93 -0.24 1.17 16 29 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.12 1.14 7.10 -52.48 -0.37 0.77 16 33 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 36 H 0.11 1.79 8.04 -52.49 -0.42 1.37 16 37 H 0.13 2.99 5.62 -52.49 -0.30 2.69 16 38 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.12 1.70 6.51 -52.49 -0.34 1.36 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -28.55 328.74 -8.45 -37.00 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.21 Total: 4.61 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -4.11 Total: -33.32 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.77 Total: -24.19 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: 0.00 Total: -5.51 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.55 -8.45 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.199 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds