Wall clock time and date at job start Tue Mar 31 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47163 * 2 1 4 4 C 1.50695 * 109.47528 * 180.02562 * 3 2 1 5 5 C 1.38326 * 119.87913 * 89.99402 * 4 3 2 6 6 C 1.38004 * 120.12940 * 179.97438 * 5 4 3 7 7 C 1.39380 * 119.87121 * 0.02562 * 6 5 4 8 8 C 1.48325 * 120.12417 * 180.02562 * 7 6 5 9 9 C 1.39433 * 120.05021 * 359.71856 * 8 7 6 10 10 C 1.37844 * 119.94504 * 179.78784 * 9 8 7 11 11 C 1.38998 * 120.05359 * 0.47476 * 10 9 8 12 12 O 1.35694 * 119.94986 * 179.76209 * 11 10 9 13 13 C 1.34809 * 116.99981 * 174.46716 * 12 11 10 14 14 H 1.07999 * 120.00049 * 5.06334 * 13 12 11 15 15 C 1.38648 * 120.00221 * 185.05354 * 13 12 11 16 16 N 1.31564 * 119.99528 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00256 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47021 * 90.00319 * 17 15 13 19 19 H 1.48504 * 109.47193 * 210.00157 * 17 15 13 20 20 H 1.48497 * 109.47000 * 330.00257 * 17 15 13 21 21 C 1.39004 * 120.10325 * 359.77954 * 11 10 9 22 22 C 1.37837 * 120.05133 * 359.97438 * 21 11 10 23 23 C 1.39373 * 119.75238 * 0.27122 * 7 6 5 24 24 C 1.38016 * 119.87157 * 359.45362 * 23 7 6 25 25 H 1.08996 * 109.46696 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46487 * 299.99850 * 1 2 3 27 27 H 1.08994 * 109.47237 * 59.99804 * 1 2 3 28 28 H 1.08995 * 109.47218 * 240.00363 * 2 1 3 29 29 H 1.09002 * 109.47081 * 119.99908 * 2 1 3 30 30 H 1.09000 * 109.47199 * 59.99916 * 3 2 1 31 31 H 1.09005 * 109.46799 * 300.00380 * 3 2 1 32 32 H 1.08004 * 119.93536 * 359.96234 * 5 4 3 33 33 H 1.08004 * 120.06610 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.03008 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.97004 * 180.23045 * 10 9 8 36 36 H 0.97005 * 119.99546 * 179.97438 * 16 15 13 37 37 H 1.07998 * 119.97431 * 179.97438 * 21 11 10 38 38 H 1.07996 * 120.02905 * 179.97438 * 22 21 11 39 39 H 1.08001 * 120.06574 * 179.72309 * 23 7 6 40 40 H 1.07998 * 119.93574 * 180.25206 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2356 1.4427 -1.2003 6 6 5.6156 1.4433 -1.2069 7 6 6.3156 1.4433 -0.0016 8 6 7.7988 1.4445 -0.0022 9 6 8.4966 1.4398 -1.2094 10 6 9.8750 1.4454 -1.2074 11 6 10.5694 1.4458 -0.0033 12 8 11.9264 1.4464 -0.0038 13 6 12.5388 1.5626 1.1916 14 1 11.9541 1.5674 2.0996 15 6 13.9192 1.6757 1.2552 16 7 14.6313 1.6701 0.1490 17 14 14.7678 1.8359 2.9116 18 1 15.1033 0.4849 3.4286 19 1 16.0133 2.6294 2.7550 20 1 13.8615 2.5209 3.8679 21 6 9.8760 1.4452 1.2015 22 6 8.4976 1.4447 1.2045 23 6 5.6166 1.4369 1.2041 24 6 4.2365 1.4421 1.1986 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.6922 1.4421 -2.1337 33 1 6.1522 1.4430 -2.1442 34 1 7.9576 1.4356 -2.1452 35 1 10.4159 1.4455 -2.1422 36 1 15.5970 1.7497 0.1935 37 1 10.4176 1.4450 2.1358 38 1 7.9592 1.4438 2.1407 39 1 6.1539 1.4324 2.1410 40 1 3.6938 1.4413 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:51 Heat of formation + Delta-G solvation = -0.606884 kcal Electronic energy + Delta-G solvation = -20123.940537 eV Core-core repulsion = 17061.263180 eV Total energy + Delta-G solvation = -3062.677358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.63317 -38.73481 -36.65746 -35.00047 -32.47981 -31.49794 -31.11982 -30.02124 -28.55899 -26.04745 -25.16327 -23.13076 -22.50462 -21.31233 -21.15878 -20.11356 -18.06366 -17.35537 -16.23058 -15.60687 -15.42592 -14.67712 -14.60590 -14.07779 -13.94563 -13.75928 -13.71946 -13.58537 -13.44332 -12.89728 -12.67091 -12.46064 -12.25715 -12.12685 -11.75366 -11.57681 -11.25358 -11.16985 -11.15299 -10.89238 -10.83687 -10.59859 -10.52432 -10.37067 -9.39189 -9.08260 -8.77167 -8.52751 -8.28138 -6.94692 -6.54322 -4.10838 1.18550 1.59530 2.17919 2.50821 3.08516 3.09423 3.14266 3.89680 3.96410 4.62972 4.69265 4.73391 4.91689 4.99078 5.02672 5.09970 5.13204 5.24181 5.30522 5.33545 5.53897 5.57441 5.62695 5.65795 5.70396 5.71123 5.78902 5.96789 6.07101 6.10108 6.17948 6.24380 6.31982 6.49881 6.64479 6.71385 6.74974 6.86261 6.99782 7.13398 7.27786 7.33352 7.38355 7.73256 7.90799 8.90855 9.59453 10.62999 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.044811 B = 0.002703 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.693013 B =10355.990275 C =10842.573285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.075 4.075 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.002 4.002 8 C -0.161 4.161 9 C -0.057 4.057 10 C -0.194 4.194 11 C 0.159 3.841 12 O -0.170 6.170 13 C -0.392 4.392 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.858 5.858 17 Si 0.943 3.057 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.266 1.266 21 C -0.236 4.236 22 C -0.053 4.053 23 C -0.129 4.129 24 C -0.110 4.110 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.272 0.728 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.052 -1.013 0.646 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.113 4.113 4 C -0.110 4.110 5 C -0.128 4.128 6 C -0.147 4.147 7 C -0.002 4.002 8 C -0.162 4.162 9 C -0.075 4.075 10 C -0.213 4.213 11 C 0.104 3.896 12 O -0.073 6.073 13 C -0.468 4.468 14 H 0.112 0.888 15 C -0.166 4.166 16 N -0.492 5.492 17 Si 0.767 3.233 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.191 1.191 21 C -0.255 4.255 22 C -0.071 4.071 23 C -0.147 4.147 24 C -0.128 4.128 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.598 -1.012 0.397 20.627 hybrid contribution 0.513 0.072 0.872 1.014 sum -20.085 -0.940 1.269 20.147 Atomic orbital electron populations 1.21796 0.95955 1.01549 1.01701 1.21525 0.95323 0.96450 1.02423 1.20560 0.91358 0.96982 1.02381 1.19759 0.95172 1.02783 0.93266 1.20860 0.93993 1.00804 0.97152 1.21183 0.93816 1.02007 0.97715 1.18843 0.92374 0.96157 0.92814 1.18253 0.90531 1.13839 0.93580 1.20714 0.92944 0.97305 0.96576 1.20158 0.93286 1.11542 0.96297 1.19490 0.84799 0.91970 0.93319 1.83951 1.13004 1.77108 1.33204 1.21387 0.90222 1.52073 0.83110 0.88831 1.25343 0.95422 0.96317 0.99474 1.70044 1.06989 1.45035 1.27096 0.85678 0.78917 0.78763 0.79905 1.19763 1.20151 1.19089 1.21107 0.94059 1.11833 0.98487 1.20826 0.93461 0.96402 0.96435 1.21188 0.93828 1.01973 0.97737 1.20866 0.93983 1.00795 0.97167 0.92809 0.92807 0.92796 0.91900 0.91907 0.91438 0.91437 0.86653 0.86045 0.86667 0.86241 0.91833 0.85287 0.87099 0.86088 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 3 C -0.08 -0.67 5.34 -27.88 -0.15 -0.82 16 4 C -0.11 -1.28 5.14 -104.56 -0.54 -1.82 16 5 C -0.11 -1.34 9.68 -39.63 -0.38 -1.73 16 6 C -0.13 -1.81 9.43 -39.24 -0.37 -2.18 16 7 C 0.00 -0.03 5.88 -104.90 -0.62 -0.65 16 8 C -0.16 -2.90 5.88 -104.85 -0.62 -3.52 16 9 C -0.06 -1.04 9.42 -39.28 -0.37 -1.41 16 10 C -0.19 -4.07 9.98 -39.44 -0.39 -4.46 16 11 C 0.16 3.81 6.65 -39.02 -0.26 3.55 16 12 O -0.17 -4.79 9.75 0.28 0.00 -4.79 16 13 C -0.39 -10.76 9.48 30.88 0.29 -10.47 16 14 H 0.09 2.37 5.19 -52.49 -0.27 2.10 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 16 N -0.86 -24.72 13.67 55.48 0.76 -23.97 16 17 Si 0.94 20.13 29.55 -169.99 -5.02 15.10 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 C -0.24 -5.08 9.15 -39.44 -0.36 -5.45 16 22 C -0.05 -0.99 9.42 -39.28 -0.37 -1.36 16 23 C -0.13 -1.83 9.43 -39.24 -0.37 -2.20 16 24 C -0.11 -1.36 9.68 -39.63 -0.38 -1.74 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.12 1.55 6.20 -52.48 -0.33 1.22 16 34 H 0.12 1.74 6.20 -52.49 -0.33 1.42 16 35 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.13 2.75 5.62 -52.49 -0.30 2.46 16 38 H 0.11 1.75 6.20 -52.49 -0.33 1.43 16 39 H 0.12 1.59 6.20 -52.49 -0.33 1.26 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -29.75 335.14 -9.21 -38.96 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.23 Total: 4.71 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: -4.77 Total: -35.08 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.00 Total: -4.79 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.75 -9.21 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.357 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds