Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47102 * 2 1 4 4 C 1.38033 * 120.06437 * 264.99839 * 3 2 1 5 5 C 1.38305 * 120.12612 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.25313 * 0.04265 * 5 4 3 7 7 C 1.37986 * 120.11900 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.06009 * 179.97438 * 7 6 5 9 9 C 1.39364 * 120.06415 * 85.30101 * 3 2 1 10 10 C 1.48323 * 120.12144 * 359.97438 * 9 3 2 11 11 C 1.39429 * 120.05528 * 64.95598 * 10 9 3 12 12 C 1.37835 * 119.95095 * 179.80986 * 11 10 9 13 13 C 1.38997 * 120.04828 * 0.44191 * 12 11 10 14 14 O 1.35703 * 119.94741 * 179.76656 * 13 12 11 15 15 C 1.34821 * 117.00202 * 174.47736 * 14 13 12 16 16 H 1.08004 * 119.99935 * 5.05571 * 15 14 13 17 17 C 1.38644 * 120.00103 * 185.05387 * 15 14 13 18 18 N 1.31556 * 119.99872 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99886 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47561 * 89.99616 * 19 17 15 21 21 H 1.48506 * 109.46850 * 209.99958 * 19 17 15 22 22 H 1.48503 * 109.47142 * 329.99108 * 19 17 15 23 23 C 1.38998 * 120.10709 * 359.79267 * 13 12 11 24 24 C 1.37831 * 120.05378 * 359.97438 * 23 13 12 25 25 H 1.09005 * 109.46988 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47185 * 299.99959 * 1 2 3 27 27 H 1.09000 * 109.46922 * 60.00280 * 1 2 3 28 28 H 1.09006 * 109.47412 * 239.99863 * 2 1 3 29 29 H 1.09000 * 109.47387 * 120.00335 * 2 1 3 30 30 H 1.08003 * 119.93508 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.87437 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.93803 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46733 * 90.00193 * 8 7 6 34 34 H 1.08995 * 109.47493 * 210.00212 * 8 7 6 35 35 H 1.09005 * 109.47130 * 330.00545 * 8 7 6 36 36 H 1.08006 * 120.02441 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.97815 * 180.23520 * 12 11 10 38 38 H 0.97000 * 120.00141 * 180.02562 * 18 17 15 39 39 H 1.08003 * 119.97625 * 179.97438 * 23 13 12 40 40 H 1.07996 * 120.03270 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0381 -1.1901 5 6 2.8226 3.3418 -1.1915 6 6 2.9586 4.0345 -0.0015 7 6 2.6333 3.4273 1.1941 8 6 2.7825 4.1828 2.4895 9 6 2.1719 2.1120 1.2021 10 6 1.8261 1.4521 2.4846 11 6 2.5623 0.3529 2.9251 12 6 2.2416 -0.2563 4.1192 13 6 1.1794 0.2186 4.8796 14 8 0.8625 -0.3857 6.0526 15 6 -0.1022 0.1910 6.7972 16 1 -0.6411 1.0455 6.4151 17 6 -0.4026 -0.3128 8.0535 18 7 -1.3435 0.2503 8.7802 19 14 0.5299 -1.7902 8.7147 20 1 1.7277 -1.3266 9.4601 21 1 -0.3511 -2.5644 9.6256 22 1 0.9542 -2.6543 7.5840 23 6 0.4409 1.3111 4.4402 24 6 0.7609 1.9266 3.2492 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.2575 1.5019 -2.1219 31 1 3.0782 3.8209 -2.1251 32 1 3.3199 5.0521 -0.0085 33 1 1.8535 4.7073 2.7132 34 1 3.0075 3.4832 3.2944 35 1 3.5942 4.9045 2.3979 36 1 3.3855 -0.0187 2.3328 37 1 2.8139 -1.1052 4.4626 38 1 -1.5535 -0.1019 9.6593 39 1 -0.3843 1.6781 5.0325 40 1 0.1871 2.7757 2.9083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = 4.498268 kcal Electronic energy + Delta-G solvation = -21362.137157 eV Core-core repulsion = 18299.681175 eV Total energy + Delta-G solvation = -3062.455982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96978 -38.80718 -36.51043 -34.38734 -32.69079 -32.19295 -30.31505 -30.07290 -28.04469 -26.65254 -25.29527 -23.77125 -22.30902 -21.79493 -20.27255 -20.11564 -17.92820 -17.37582 -16.30515 -15.64975 -15.09719 -14.86296 -14.20063 -14.09625 -13.81470 -13.72331 -13.56357 -13.41316 -13.19374 -12.74917 -12.69463 -12.35069 -12.28368 -12.15412 -11.81666 -11.64714 -11.49807 -11.32263 -10.99178 -10.81094 -10.76586 -10.53553 -10.39154 -10.18376 -9.44580 -8.92501 -8.48412 -8.44946 -8.30787 -7.25714 -6.45996 -4.12290 1.39031 1.49672 2.09415 2.20704 3.19355 3.23206 3.37428 3.84186 4.20040 4.42719 4.80084 4.87756 4.92558 5.01542 5.06557 5.07482 5.29393 5.45551 5.53824 5.53956 5.59906 5.61739 5.68437 5.79767 5.83532 5.94795 6.06194 6.07887 6.17412 6.18569 6.23744 6.36244 6.42712 6.46702 6.57754 6.68579 6.75428 6.86010 6.96064 7.17899 7.20553 7.27060 7.55064 7.75540 7.98983 8.89040 9.50970 10.61404 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.004121 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.540207 B = 6792.885348 C = 7207.018385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.070 4.070 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.075 4.075 8 C -0.114 4.114 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.061 4.061 12 C -0.192 4.192 13 C 0.163 3.837 14 O -0.215 6.215 15 C -0.390 4.390 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.878 5.878 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.220 4.220 24 C -0.054 4.054 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.134 0.866 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 3.687 -16.632 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.070 4.070 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.075 4.075 8 C -0.171 4.171 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.080 4.080 12 C -0.211 4.211 13 C 0.110 3.890 14 O -0.119 6.119 15 C -0.466 4.466 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.515 5.515 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.240 4.240 24 C -0.073 4.073 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.089 3.472 -16.282 18.095 hybrid contribution 0.164 -0.378 0.332 0.529 sum 7.253 3.094 -15.950 17.793 Atomic orbital electron populations 1.21678 0.94746 1.01554 1.02066 1.20598 0.96440 0.92661 1.02764 1.19988 0.98461 0.96350 0.92210 1.20885 1.01180 0.95278 0.97201 1.21033 1.00798 0.94843 0.97670 1.20896 1.02055 0.99631 0.92083 1.20019 0.98340 0.93854 0.95285 1.20807 1.01644 0.99732 0.94894 1.18586 0.98154 0.92648 0.92228 1.18132 1.00561 0.99688 0.95490 1.20589 0.98150 0.94427 0.94800 1.20120 0.99851 1.04315 0.96816 1.19188 0.92368 0.90874 0.86556 1.83558 1.52522 1.48350 1.27515 1.20780 1.12400 1.15285 0.98095 0.87546 1.24470 0.96192 0.98575 0.94696 1.69644 1.29589 1.40581 1.11689 0.86187 0.79516 0.81986 0.79261 1.19842 1.20746 1.18332 1.21199 1.04188 0.99878 0.98690 1.20762 0.95316 0.97903 0.93295 0.92655 0.91980 0.93222 0.91835 0.90006 0.86595 0.86654 0.86539 0.91333 0.90677 0.92195 0.86906 0.86433 0.90986 0.84849 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.09 -1.10 5.59 -27.88 -0.16 -1.25 16 3 C -0.07 -0.94 5.15 -104.28 -0.54 -1.48 16 4 C -0.13 -1.52 9.67 -39.63 -0.38 -1.90 16 5 C -0.13 -1.42 10.04 -39.51 -0.40 -1.82 16 6 C -0.13 -1.55 9.69 -39.63 -0.38 -1.93 16 7 C -0.07 -1.03 5.90 -104.28 -0.62 -1.64 16 8 C -0.11 -1.46 9.05 36.01 0.33 -1.14 16 9 C -0.02 -0.24 5.31 -104.90 -0.56 -0.80 16 10 C -0.14 -2.27 3.32 -104.85 -0.35 -2.62 16 11 C -0.06 -1.03 7.86 -39.29 -0.31 -1.33 16 12 C -0.19 -3.67 9.98 -39.45 -0.39 -4.07 16 13 C 0.16 3.64 6.65 -39.02 -0.26 3.38 16 14 O -0.21 -5.54 8.58 0.22 0.00 -5.54 16 15 C -0.39 -10.79 9.94 30.88 0.31 -10.48 16 16 H 0.11 3.00 5.42 -52.48 -0.28 2.72 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.01 13.96 55.48 0.77 -24.24 16 19 Si 0.91 21.35 28.62 -169.99 -4.86 16.49 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.22 -4.60 9.15 -39.45 -0.36 -4.96 16 24 C -0.05 -0.97 8.79 -39.28 -0.35 -1.31 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.90 7.99 -51.93 -0.42 0.48 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 29 H 0.08 1.11 5.49 -51.93 -0.29 0.82 16 30 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.08 6.90 -51.93 -0.36 0.73 16 35 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.11 1.64 7.81 -52.48 -0.41 1.23 16 37 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.13 2.95 5.62 -52.48 -0.30 2.65 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -28.44 332.36 -8.62 -37.07 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.40 Total: 4.31 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -4.14 Total: -33.10 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.77 Total: -24.24 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.00 Total: -5.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.86 Total: 16.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.44 -8.62 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.565 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds