Wall clock time and date at job start Tue Mar 31 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38342 * 119.94057 * 2 1 4 4 C 1.38303 * 120.24270 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.93680 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46802 * 269.97204 * 5 4 3 7 7 C 1.38043 * 120.12229 * 359.97438 * 4 3 2 8 8 C 1.39315 * 119.87647 * 0.28241 * 7 4 3 9 9 C 1.48391 * 120.12018 * 179.71882 * 8 7 4 10 10 C 1.39351 * 120.12169 * 359.72958 * 9 8 7 11 11 C 1.38001 * 119.87756 * 179.74315 * 10 9 8 12 12 C 1.38337 * 120.12102 * 0.50182 * 11 10 9 13 13 C 1.38303 * 120.24244 * 359.77168 * 12 11 10 14 14 C 1.50702 * 119.93976 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47297 * 270.02189 * 14 13 12 16 16 H 1.08005 * 119.99648 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00119 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00232 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99696 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47522 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46770 * 120.00158 * 19 17 15 22 22 H 1.48499 * 109.46689 * 239.99624 * 19 17 15 23 23 C 1.38036 * 120.12075 * 359.97315 * 13 12 11 24 24 C 1.38001 * 119.93803 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47220 * 90.00010 * 1 2 3 26 26 H 1.08997 * 109.47164 * 210.00423 * 1 2 3 27 27 H 1.09001 * 109.47269 * 330.00294 * 1 2 3 28 28 H 1.07998 * 119.87977 * 359.97438 * 3 2 1 29 29 H 1.08988 * 109.47712 * 29.97242 * 5 4 3 30 30 H 1.09003 * 109.47058 * 149.97726 * 5 4 3 31 31 H 0.96697 * 114.00170 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.05911 * 179.97438 * 7 4 3 33 33 H 1.08007 * 120.06070 * 359.97081 * 10 9 8 34 34 H 1.08005 * 119.93889 * 180.25071 * 11 10 9 35 35 H 1.07997 * 119.87817 * 179.74237 * 12 11 10 36 36 H 1.09007 * 109.47086 * 30.01788 * 14 13 12 37 37 H 1.09000 * 109.47357 * 150.02076 * 14 13 12 38 38 H 0.96998 * 120.00184 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.05769 * 179.97438 * 23 13 12 40 40 H 1.07998 * 120.05894 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.3256 2.5160 0.0011 6 8 4.5622 2.9299 -1.3461 7 6 4.2795 0.0157 0.0016 8 6 3.5893 -1.1944 -0.0038 9 6 4.3353 -2.4771 -0.0090 10 6 5.7288 -2.4757 -0.0141 11 6 6.4175 -3.6715 -0.0136 12 6 5.7271 -4.8703 -0.0184 13 6 4.3441 -4.8776 -0.0190 14 6 3.5988 -6.1874 -0.0249 15 6 3.3515 -6.6183 -1.4476 16 1 3.6988 -6.0048 -2.2657 17 6 2.6818 -7.7958 -1.7047 18 7 2.2593 -8.5431 -0.7085 19 14 2.3759 -8.3302 -3.4684 20 1 2.9482 -7.3229 -4.3973 21 1 3.0225 -9.6458 -3.7061 22 1 0.9143 -8.4473 -3.7036 23 6 3.6451 -3.6873 -0.0143 24 6 2.1957 -1.1959 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6545 2.1324 -0.0004 29 1 3.7314 3.2719 0.5144 30 1 5.2785 2.3917 0.5157 31 1 5.0392 3.7676 -1.4221 32 1 5.3595 0.0226 0.0016 33 1 6.2688 -1.5403 -0.0149 34 1 7.4976 -3.6715 -0.0135 35 1 6.2700 -5.8038 -0.0221 36 1 4.1924 -6.9454 0.4864 37 1 2.6452 -6.0652 0.4887 38 1 1.7885 -9.3716 -0.8895 39 1 2.5651 -3.6942 -0.0152 40 1 1.6556 -2.1311 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243697308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:54 Heat of formation + Delta-G solvation = -22.410838 kcal Electronic energy + Delta-G solvation = -20570.643148 eV Core-core repulsion = 17507.020300 eV Total energy + Delta-G solvation = -3063.622848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86330 -38.33405 -36.81102 -33.83158 -32.93485 -32.43568 -31.14373 -28.98065 -27.41318 -26.75647 -25.99398 -23.37838 -23.02432 -21.33297 -20.24112 -19.36093 -17.66297 -16.92126 -16.30856 -15.81298 -15.45606 -15.24294 -14.52119 -14.36990 -14.07598 -13.79620 -13.59500 -13.39414 -12.92719 -12.76196 -12.57215 -12.35412 -12.20364 -11.99526 -11.61665 -11.32877 -11.21006 -11.11689 -10.87040 -10.71229 -10.44302 -10.33773 -10.23028 -9.59553 -9.46930 -9.19722 -8.62867 -8.44064 -7.97428 -7.56259 -6.05750 -4.09507 0.99570 1.36303 2.08644 2.30831 3.28958 3.36698 3.42367 3.70333 4.28395 4.41049 4.61548 4.68117 4.77996 4.83394 5.07799 5.10320 5.19657 5.29042 5.36203 5.43690 5.48960 5.51964 5.57709 5.60711 5.80425 5.92126 5.99820 6.08075 6.18420 6.23469 6.44064 6.55685 6.63396 6.64403 6.73833 6.99731 7.10579 7.14984 7.21091 7.37485 7.48280 7.68382 7.81790 7.90448 8.30253 8.96132 9.54658 11.04187 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.003869 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.570426 B = 7235.535140 C = 7997.338359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.109 4.109 4 C -0.093 4.093 5 C 0.120 3.880 6 O -0.566 6.566 7 C -0.101 4.101 8 C -0.025 4.025 9 C -0.060 4.060 10 C -0.136 4.136 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.033 4.033 14 C 0.047 3.953 15 C -0.512 4.512 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.108 4.108 24 C -0.106 4.106 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.377 0.623 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 20.876 3.651 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.127 4.127 4 C -0.093 4.093 5 C 0.043 3.957 6 O -0.372 6.372 7 C -0.119 4.119 8 C -0.025 4.025 9 C -0.060 4.060 10 C -0.153 4.153 11 C -0.141 4.141 12 C -0.136 4.136 13 C -0.033 4.033 14 C 0.010 3.990 15 C -0.550 4.550 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.126 4.126 24 C -0.124 4.124 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.224 0.776 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.298 20.153 3.567 20.595 hybrid contribution 0.152 0.090 -0.862 0.880 sum 2.450 20.243 2.705 20.570 Atomic orbital electron populations 1.20787 0.91040 1.02732 1.02456 1.19811 0.96115 0.92797 0.99931 1.20846 0.93243 0.97430 1.01217 1.19427 0.93631 0.93785 1.02499 1.20956 0.97981 0.93122 0.83680 1.86611 1.80215 1.43891 1.26478 1.21055 0.99731 0.91031 1.00095 1.18856 0.92903 0.92337 0.98375 1.18672 0.93011 0.91579 1.02753 1.20914 0.93094 0.97607 1.03733 1.20965 0.99106 0.92592 1.01429 1.21189 0.94406 0.97534 1.00443 1.20638 0.93681 0.97047 0.91970 1.18373 0.94987 0.87787 0.97819 1.21101 1.36406 1.06005 0.91458 0.92391 1.25005 0.95572 0.96444 0.97268 1.69961 1.38749 1.13840 1.30736 0.86492 0.77959 0.78568 0.84805 1.19633 1.20913 1.20904 1.21148 0.99789 0.91000 1.00648 1.21290 0.93456 0.98059 0.99564 0.91104 0.91244 0.91743 0.86381 0.92920 0.92829 0.77597 0.85861 0.86934 0.86814 0.86303 0.95215 0.95298 0.92880 0.86149 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.00 0.36 -0.81 16 2 C -0.09 -1.14 5.87 -104.67 -0.61 -1.75 16 3 C -0.11 -1.36 9.35 -39.52 -0.37 -1.73 16 4 C -0.09 -1.19 5.50 -104.67 -0.58 -1.77 16 5 C 0.12 1.14 7.17 36.01 0.26 1.40 16 6 O -0.57 -5.80 13.64 -35.23 -0.48 -6.28 16 7 C -0.10 -1.43 9.08 -39.25 -0.36 -1.79 16 8 C -0.02 -0.40 5.88 -104.90 -0.62 -1.01 16 9 C -0.06 -1.07 5.88 -104.90 -0.62 -1.69 16 10 C -0.14 -2.23 9.43 -39.25 -0.37 -2.60 16 11 C -0.12 -2.06 10.03 -39.63 -0.40 -2.46 16 12 C -0.12 -2.31 9.69 -39.52 -0.38 -2.69 16 13 C -0.03 -0.73 5.06 -104.67 -0.53 -1.26 16 14 C 0.05 1.21 5.10 -29.04 -0.15 1.07 16 15 C -0.51 -14.37 9.09 -34.44 -0.31 -14.69 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.11 -2.17 9.08 -39.25 -0.36 -2.53 16 24 C -0.11 -1.61 9.08 -39.25 -0.36 -1.96 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.05 0.40 8.08 -51.94 -0.42 -0.02 16 30 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.38 1.83 9.12 45.56 0.42 2.25 16 32 H 0.12 1.57 6.21 -52.49 -0.33 1.24 16 33 H 0.11 1.54 6.21 -52.48 -0.33 1.22 16 34 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.03 0.80 8.09 -51.92 -0.42 0.38 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.12 2.35 6.21 -52.49 -0.33 2.02 16 40 H 0.13 1.95 6.21 -52.49 -0.33 1.63 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -32.31 339.36 -9.77 -42.08 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.64 Total: 2.80 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -5.48 Total: -34.71 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.48 Total: -6.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.31 -9.77 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243697308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.670 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds