Wall clock time and date at job start Tue Mar 31 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38345 * 119.93478 * 2 1 4 4 C 1.38297 * 120.24133 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.93761 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.47264 * 90.00080 * 5 4 3 7 7 C 1.38041 * 120.12396 * 0.25590 * 4 3 2 8 8 C 1.39316 * 119.87313 * 359.51971 * 7 4 3 9 9 C 1.48390 * 120.12137 * 180.23243 * 8 7 4 10 10 C 1.39348 * 120.11807 * 359.96809 * 9 8 7 11 11 C 1.38012 * 119.87371 * 179.76930 * 10 9 8 12 12 C 1.38324 * 120.12334 * 0.51259 * 11 10 9 13 13 C 1.50699 * 119.87583 * 179.76461 * 12 11 10 14 14 C 1.50700 * 109.47412 * 269.97640 * 13 12 11 15 15 H 1.08002 * 119.99571 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00372 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00038 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46825 * 90.00264 * 18 16 14 20 20 H 1.48499 * 109.47165 * 210.00040 * 18 16 14 21 21 H 1.48495 * 109.46995 * 330.00201 * 18 16 14 22 22 C 1.38315 * 120.24386 * 359.74302 * 12 11 10 23 23 C 1.38015 * 120.12009 * 359.97438 * 22 12 11 24 24 C 1.37996 * 119.94460 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47283 * 90.00068 * 1 2 3 26 26 H 1.09003 * 109.46286 * 209.99465 * 1 2 3 27 27 H 1.08997 * 109.46944 * 329.99220 * 1 2 3 28 28 H 1.08001 * 119.87825 * 0.02942 * 3 2 1 29 29 H 1.09001 * 109.47438 * 329.99823 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.00079 * 5 4 3 31 31 H 0.96691 * 114.00079 * 179.97438 * 6 5 4 32 32 H 1.07995 * 120.06064 * 179.74261 * 7 4 3 33 33 H 1.08003 * 120.05873 * 0.02762 * 10 9 8 34 34 H 1.08001 * 119.93836 * 180.23505 * 11 10 9 35 35 H 1.08996 * 109.47462 * 29.98160 * 13 12 11 36 36 H 1.09007 * 109.46696 * 149.97736 * 13 12 11 37 37 H 0.96998 * 120.00515 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.93821 * 180.02562 * 22 12 11 39 39 H 1.08006 * 120.05817 * 180.02562 * 23 22 12 40 40 H 1.08004 * 120.05446 * 359.97387 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1989 0.0000 4 6 3.5803 1.2063 -0.0005 5 6 4.3254 2.5162 -0.0011 6 8 4.5615 2.9306 1.3460 7 6 4.2795 0.0161 -0.0064 8 6 3.5894 -1.1941 -0.0017 9 6 4.3354 -2.4769 -0.0027 10 6 5.7289 -2.4753 -0.0091 11 6 6.4177 -3.6712 -0.0053 12 6 5.7274 -4.8699 -0.0058 13 6 6.4852 -6.1725 -0.0069 14 6 6.7368 -6.6062 -1.4281 15 1 6.3836 -5.9989 -2.2484 16 6 7.4177 -7.7780 -1.6811 17 7 7.8473 -8.5177 -0.6821 18 14 7.7289 -8.3158 -3.4427 19 1 9.0218 -7.7548 -3.9104 20 1 7.7810 -9.7986 -3.5057 21 1 6.6313 -7.8217 -4.3123 22 6 4.3443 -4.8773 -0.0048 23 6 3.6453 -3.6873 -0.0027 24 6 2.1959 -1.1957 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6543 2.1324 0.0005 29 1 3.7313 3.2720 -0.5149 30 1 5.2785 2.3919 -0.5153 31 1 5.0384 3.7683 1.4220 32 1 5.3594 0.0230 -0.0110 33 1 6.2688 -1.5399 -0.0129 34 1 7.4977 -3.6712 -0.0064 35 1 7.4375 -6.0394 0.5063 36 1 5.8989 -6.9343 0.5071 37 1 8.3261 -9.3423 -0.8600 38 1 3.8103 -5.8161 -0.0047 39 1 2.5653 -3.6942 -0.0015 40 1 1.6558 -2.1311 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243697425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:57 Heat of formation + Delta-G solvation = -22.644296 kcal Electronic energy + Delta-G solvation = -20325.541743 eV Core-core repulsion = 17261.908772 eV Total energy + Delta-G solvation = -3063.632971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91356 -38.35984 -36.84836 -33.98568 -32.98703 -32.34411 -30.43187 -30.08301 -27.27256 -26.64647 -26.14801 -23.69454 -22.19076 -21.59427 -20.30501 -19.78217 -17.68367 -16.90021 -16.32079 -15.88277 -15.66705 -14.98380 -14.42086 -14.36418 -14.13067 -13.88750 -13.72327 -13.43497 -12.91659 -12.77333 -12.70114 -12.37819 -12.31048 -12.16742 -11.68501 -11.37073 -11.26612 -11.08728 -10.95820 -10.67524 -10.53455 -10.32051 -10.14813 -9.68300 -9.51125 -9.00546 -8.70355 -8.44962 -8.34544 -7.41352 -6.06405 -4.10819 0.96800 1.29238 2.02901 2.30476 3.29077 3.35330 3.39601 3.65567 4.24823 4.39285 4.59488 4.62838 4.71142 4.79840 5.00895 5.05646 5.16762 5.25639 5.27968 5.39957 5.41194 5.45813 5.47602 5.52062 5.72420 5.94797 5.95637 6.01238 6.13799 6.20743 6.41370 6.49524 6.54694 6.60439 6.69405 6.97146 7.11042 7.14486 7.15267 7.35135 7.47203 7.67309 7.81037 7.89102 8.28588 8.94465 9.53212 11.03223 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.003183 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.452129 B = 8793.797601 C = 9294.825261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.089 4.089 5 C 0.119 3.881 6 O -0.567 6.567 7 C -0.104 4.104 8 C -0.017 4.017 9 C -0.090 4.090 10 C -0.106 4.106 11 C -0.125 4.125 12 C -0.023 4.023 13 C 0.045 3.955 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.125 4.125 23 C -0.106 4.106 24 C -0.113 4.113 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.378 0.622 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 20.720 1.628 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.089 4.089 5 C 0.041 3.959 6 O -0.372 6.372 7 C -0.122 4.122 8 C -0.017 4.017 9 C -0.090 4.090 10 C -0.124 4.124 11 C -0.143 4.143 12 C -0.023 4.023 13 C 0.008 3.992 14 C -0.551 4.551 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.143 4.143 23 C -0.124 4.124 24 C -0.131 4.131 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.225 0.775 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.849 19.992 1.790 22.816 hybrid contribution 0.591 0.113 -1.152 1.300 sum -10.258 20.105 0.638 22.579 Atomic orbital electron populations 1.20773 0.91149 1.02718 1.02253 1.19788 0.95989 0.92881 1.00076 1.20827 0.93253 0.97404 1.01551 1.19446 0.93616 0.93846 1.02016 1.20973 0.98098 0.93075 0.83719 1.86595 1.80237 1.43960 1.26440 1.21091 0.99910 0.91041 1.00143 1.18838 0.92785 0.92407 0.97691 1.18502 0.93028 0.91367 1.06100 1.21097 0.93039 0.97861 1.00362 1.21039 1.00008 0.91692 1.01562 1.20817 0.93736 0.97253 0.90519 1.18403 0.94947 0.87990 0.97816 1.21046 1.36083 1.06545 0.91383 0.92436 1.25014 0.95579 0.96422 0.97301 1.69956 1.38212 1.14360 1.30742 0.86524 0.78724 0.77697 0.84709 1.20560 1.21132 1.19780 1.21037 0.94333 0.97366 1.01560 1.21090 0.98965 0.91906 1.00403 1.21162 0.93388 0.97718 1.00845 0.91224 0.91461 0.91684 0.86407 0.92903 0.92702 0.77514 0.85745 0.86790 0.86141 0.95209 0.95196 0.92797 0.86134 0.86751 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.60 16 2 C -0.09 -1.02 5.88 -104.67 -0.61 -1.64 16 3 C -0.11 -1.30 9.35 -39.52 -0.37 -1.67 16 4 C -0.09 -1.09 5.50 -104.67 -0.58 -1.67 16 5 C 0.12 1.11 7.17 36.01 0.26 1.37 16 6 O -0.57 -5.63 13.64 -35.23 -0.48 -6.11 16 7 C -0.10 -1.43 9.08 -39.25 -0.36 -1.79 16 8 C -0.02 -0.26 5.88 -104.90 -0.62 -0.87 16 9 C -0.09 -1.52 5.88 -104.90 -0.62 -2.14 16 10 C -0.11 -1.82 9.43 -39.25 -0.37 -2.19 16 11 C -0.12 -2.46 9.68 -39.63 -0.38 -2.84 16 12 C -0.02 -0.51 5.07 -104.56 -0.53 -1.04 16 13 C 0.05 1.16 5.10 -29.04 -0.15 1.01 16 14 C -0.51 -14.33 9.09 -34.44 -0.31 -14.64 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 18 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.12 -2.45 9.68 -39.63 -0.38 -2.83 16 23 C -0.11 -1.81 9.43 -39.26 -0.37 -2.18 16 24 C -0.11 -1.51 9.08 -39.26 -0.36 -1.87 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.38 1.76 9.12 45.56 0.42 2.18 16 32 H 0.12 1.59 6.21 -52.49 -0.33 1.26 16 33 H 0.11 1.67 6.21 -52.48 -0.33 1.34 16 34 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.11 1.64 6.21 -52.48 -0.33 1.31 16 40 H 0.13 1.51 6.21 -52.48 -0.33 1.19 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -32.16 339.36 -9.77 -41.93 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.64 Total: 2.22 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -5.48 Total: -34.03 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.48 Total: -6.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.16 -9.77 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243697425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.288 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds