Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38415 * 119.92894 * 2 1 4 4 C 1.38363 * 120.28942 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.92505 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47263 * 269.97816 * 5 4 3 7 7 C 1.37958 * 120.14932 * 359.97438 * 4 3 2 8 8 C 1.39577 * 119.85297 * 0.02562 * 7 4 3 9 9 C 1.47989 * 120.14726 * 179.97438 * 8 7 4 10 10 C 1.39957 * 119.88024 * 0.19501 * 9 8 7 11 11 C 1.36232 * 120.12374 * 180.25640 * 10 9 8 12 12 C 1.40953 * 119.87319 * 359.52613 * 11 10 9 13 13 C 1.41032 * 120.11709 * 180.22649 * 12 11 10 14 14 H 1.07998 * 119.99738 * 153.75084 * 13 12 11 15 15 C 1.40015 * 119.99712 * 333.75213 * 13 12 11 16 16 N 1.30795 * 120.00521 * 343.39244 * 15 13 12 17 17 Si 1.86800 * 119.99533 * 163.39577 * 15 13 12 18 18 H 1.48494 * 109.47640 * 89.99868 * 17 15 13 19 19 H 1.48503 * 109.46920 * 210.00075 * 17 15 13 20 20 H 1.48503 * 109.46995 * 329.99618 * 17 15 13 21 21 C 1.40912 * 119.76578 * 0.25468 * 12 11 10 22 22 C 1.50696 * 120.06066 * 180.02562 * 21 12 11 23 23 C 1.36271 * 119.87850 * 359.97438 * 21 12 11 24 24 C 1.37920 * 119.92660 * 180.25642 * 2 1 3 25 25 H 1.09010 * 109.47250 * 89.99945 * 1 2 3 26 26 H 1.09002 * 109.47492 * 209.99620 * 1 2 3 27 27 H 1.08996 * 109.47396 * 330.00293 * 1 2 3 28 28 H 1.07991 * 119.85281 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46800 * 29.98028 * 5 4 3 30 30 H 1.08998 * 109.47006 * 149.97117 * 5 4 3 31 31 H 0.96696 * 113.99696 * 180.02562 * 6 5 4 32 32 H 1.08000 * 120.07762 * 180.02562 * 7 4 3 33 33 H 1.08008 * 119.93812 * 0.06147 * 10 9 8 34 34 H 1.07994 * 120.06752 * 179.80062 * 11 10 9 35 35 H 0.96989 * 119.99819 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.47115 * 89.99994 * 22 21 12 37 37 H 1.09004 * 109.47499 * 209.99862 * 22 21 12 38 38 H 1.09001 * 109.47526 * 329.99791 * 22 21 12 39 39 H 1.07996 * 119.94233 * 180.02562 * 23 21 12 40 40 H 1.07996 * 120.07682 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1996 0.0000 4 6 3.5811 1.2083 -0.0005 5 6 4.3247 2.5191 -0.0011 6 8 4.5597 2.9329 -1.3485 7 6 4.2815 0.0197 -0.0005 8 6 3.5913 -1.1935 -0.0005 9 6 4.3361 -2.4723 -0.0011 10 6 5.7356 -2.4641 0.0025 11 6 6.4262 -3.6384 -0.0033 12 6 5.7285 -4.8632 -0.0028 13 6 6.4383 -6.0819 -0.0040 14 1 5.9856 -6.9707 0.4100 15 6 7.7298 -6.1393 -0.5418 16 7 8.1562 -5.1808 -1.3229 17 14 8.8437 -7.5850 -0.1437 18 1 8.6443 -8.6562 -1.1526 19 1 10.2602 -7.1398 -0.1679 20 1 8.5123 -8.1083 1.2060 21 6 4.3194 -4.8656 -0.0018 22 6 3.5668 -6.1712 -0.0007 23 6 3.6385 -3.6852 -0.0007 24 6 2.1950 -1.1953 -0.0053 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6540 2.1327 0.0004 29 1 3.7299 3.2744 0.5125 30 1 5.2780 2.3963 0.5128 31 1 5.0356 3.7711 -1.4252 32 1 5.3615 0.0278 -0.0005 33 1 6.2691 -1.5250 0.0067 34 1 7.5061 -3.6310 -0.0038 35 1 9.0507 -5.2209 -1.6957 36 1 3.3861 -6.4855 1.0273 37 1 2.6139 -6.0418 -0.5138 38 1 4.1560 -6.9307 -0.5146 39 1 2.5586 -3.6859 0.0005 40 1 1.6551 -2.1306 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243700287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = -29.167162 kcal Electronic energy + Delta-G solvation = -20859.972403 eV Core-core repulsion = 17796.056579 eV Total energy + Delta-G solvation = -3063.915824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.27862 -37.73500 -36.51303 -34.07559 -32.79308 -32.03984 -30.89027 -28.90913 -26.82927 -26.45281 -25.51190 -24.74795 -22.06340 -20.89188 -19.76923 -18.92051 -17.41185 -17.35932 -16.18348 -15.52052 -15.17624 -14.80344 -14.16557 -13.92400 -13.62439 -13.49054 -13.22288 -12.89543 -12.74570 -12.63152 -12.21273 -11.98438 -11.78974 -11.75032 -11.61348 -11.24973 -11.20209 -11.13884 -10.81644 -10.57878 -10.49103 -10.35530 -10.02289 -9.60259 -9.40436 -9.30041 -8.49996 -8.22704 -7.46739 -7.04576 -6.86727 -4.43003 1.59882 1.80073 2.75941 2.98568 3.02402 3.03939 3.16452 3.80503 4.10814 4.54619 4.75114 5.04774 5.14443 5.28040 5.38365 5.45762 5.58204 5.60441 5.75563 5.78331 5.92424 5.98370 6.03374 6.19756 6.21440 6.36257 6.53063 6.57758 6.62587 6.69973 6.84128 6.93829 6.95724 7.03016 7.07817 7.19449 7.38699 7.50583 7.56192 7.64361 7.86402 7.95376 8.07059 8.16882 8.48977 8.72741 8.85326 10.00067 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004068 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.678348 B = 6881.925514 C = 8003.156833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.085 4.085 5 C 0.120 3.880 6 O -0.566 6.566 7 C -0.127 4.127 8 C 0.024 3.976 9 C -0.201 4.201 10 C -0.078 4.078 11 C -0.169 4.169 12 C 0.123 3.877 13 C -0.444 4.444 14 H 0.084 0.916 15 C 0.074 3.926 16 N -0.779 5.779 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.202 4.202 22 C -0.085 4.085 23 C -0.060 4.060 24 C -0.138 4.138 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.374 0.626 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.284 0.716 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 8.806 2.596 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.084 4.084 3 C -0.159 4.159 4 C -0.085 4.085 5 C 0.043 3.957 6 O -0.371 6.371 7 C -0.145 4.145 8 C 0.024 3.976 9 C -0.202 4.202 10 C -0.097 4.097 11 C -0.188 4.188 12 C 0.120 3.880 13 C -0.472 4.472 14 H 0.102 0.898 15 C -0.146 4.146 16 N -0.403 5.403 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.204 4.204 22 C -0.142 4.142 23 C -0.078 4.078 24 C -0.156 4.156 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.220 0.780 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.978 8.299 2.321 10.488 hybrid contribution 0.960 -0.008 0.156 0.973 sum -5.018 8.291 2.477 10.003 Atomic orbital electron populations 1.20731 0.91856 1.02129 1.01847 1.19688 0.95406 0.93119 1.00201 1.20605 0.93146 0.96889 1.05265 1.19362 0.93549 0.93547 1.02062 1.20973 0.97907 0.93362 0.83431 1.86624 1.80182 1.43584 1.26725 1.21051 0.99591 0.91145 1.02725 1.18970 0.92382 0.92909 0.93300 1.18043 0.92683 0.90341 1.19163 1.20515 0.92785 0.97044 0.99326 1.20961 0.99654 0.91388 1.06771 1.17590 0.90331 0.93258 0.86786 1.19698 0.98130 0.96464 1.32937 0.89788 1.26031 0.98415 0.97493 0.92689 1.69812 1.18454 1.31532 1.20473 0.86281 0.78964 0.81074 0.80355 1.19283 1.19920 1.18247 1.19445 0.93922 0.93610 1.13383 1.20411 0.97891 0.96175 0.99715 1.20256 0.97038 0.91853 0.98698 1.21095 0.93721 0.97074 1.03755 0.91634 0.91827 0.92107 0.87233 0.93304 0.93018 0.77967 0.86330 0.89096 0.86454 0.90478 0.93965 0.94278 0.92025 0.88970 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.00 0.36 -0.96 16 2 C -0.08 -1.35 5.87 -104.68 -0.61 -1.96 16 3 C -0.14 -2.22 9.35 -39.47 -0.37 -2.59 16 4 C -0.09 -1.42 5.50 -104.68 -0.58 -1.99 16 5 C 0.12 1.58 7.17 36.01 0.26 1.84 16 6 O -0.57 -7.62 13.64 -35.23 -0.48 -8.10 16 7 C -0.13 -2.40 9.08 -39.18 -0.36 -2.76 16 8 C 0.02 0.50 5.88 -104.88 -0.62 -0.12 16 9 C -0.20 -4.59 5.90 -104.63 -0.62 -5.21 16 10 C -0.08 -1.85 9.36 -39.66 -0.37 -2.22 16 11 C -0.17 -4.30 8.62 -39.28 -0.34 -4.64 16 12 C 0.12 3.17 5.56 -106.80 -0.59 2.58 16 13 C -0.44 -11.17 8.09 -37.86 -0.31 -11.47 16 14 H 0.08 2.01 6.88 -52.49 -0.36 1.65 16 15 C 0.07 1.76 5.15 -17.33 -0.09 1.67 16 16 N -0.78 -19.37 10.99 55.55 0.61 -18.76 16 17 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 21 C -0.20 -4.80 5.90 -104.32 -0.62 -5.42 16 22 C -0.09 -1.72 9.39 36.00 0.34 -1.39 16 23 C -0.06 -1.36 9.00 -39.66 -0.36 -1.72 16 24 C -0.14 -2.53 9.08 -39.18 -0.36 -2.88 16 25 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.05 0.52 8.08 -51.93 -0.42 0.11 16 30 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.37 2.91 9.12 45.56 0.42 3.32 16 32 H 0.12 2.19 6.18 -52.49 -0.32 1.87 16 33 H 0.09 1.96 6.18 -52.48 -0.32 1.63 16 34 H 0.12 3.06 6.23 -52.49 -0.33 2.73 16 35 H 0.28 6.40 8.29 -40.82 -0.34 6.07 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.06 1.26 6.77 -51.93 -0.35 0.91 16 39 H 0.09 1.85 6.18 -52.49 -0.32 1.53 16 40 H 0.12 2.04 6.18 -52.49 -0.32 1.72 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -28.80 331.20 -9.55 -38.36 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.42 Total: 10.03 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: -5.22 Total: -39.24 kcal Atomic # 7 Polarization: -19.37 SS G_CDS: 0.61 Total: -18.76 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.48 Total: -8.10 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.80 -9.55 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243700287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.189 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds