Wall clock time and date at job start Tue Mar 31 2020 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48494 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47486 * 300.00721 * 3 2 1 6 6 H 1.48504 * 109.47024 * 60.00350 * 3 2 1 7 7 C 1.37870 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47167 * 180.02562 * 9 7 2 11 11 C 1.38342 * 119.94021 * 89.99994 * 10 9 7 12 12 C 1.38302 * 120.24234 * 179.97438 * 11 10 9 13 13 C 1.38043 * 120.12264 * 0.03635 * 12 11 10 14 14 C 1.39315 * 119.87647 * 0.23931 * 13 12 11 15 15 C 1.48391 * 120.12018 * 179.71882 * 14 13 12 16 16 C 1.39342 * 120.11975 * 179.72436 * 15 14 13 17 17 C 1.38014 * 119.87409 * 179.70329 * 16 15 14 18 18 C 1.38323 * 120.12303 * 0.59650 * 17 16 15 19 19 C 1.50699 * 119.87719 * 179.70238 * 18 17 16 20 20 C 1.52998 * 109.46945 * 269.97546 * 19 18 17 21 21 O 1.42908 * 109.47340 * 180.02562 * 20 19 18 22 22 C 1.38323 * 120.24064 * 359.68019 * 18 17 16 23 23 C 1.38008 * 120.12334 * 0.02562 * 22 18 17 24 24 C 1.38002 * 119.93805 * 269.97238 * 10 9 7 25 25 H 0.96998 * 119.99997 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47307 * 59.99702 * 9 7 2 27 27 H 1.08999 * 109.46786 * 299.99979 * 9 7 2 28 28 H 1.07998 * 119.88012 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.93894 * 180.02562 * 12 11 10 30 30 H 1.08002 * 120.05911 * 179.97438 * 13 12 11 31 31 H 1.08005 * 120.06032 * 359.97438 * 16 15 14 32 32 H 1.08004 * 119.93999 * 180.27361 * 17 16 15 33 33 H 1.08998 * 109.47241 * 29.97837 * 19 18 17 34 34 H 1.08998 * 109.47115 * 149.97833 * 19 18 17 35 35 H 1.08998 * 109.47389 * 300.00200 * 20 19 18 36 36 H 1.09003 * 109.47417 * 60.00046 * 20 19 18 37 37 H 0.96700 * 113.99970 * 180.02562 * 21 20 19 38 38 H 1.08005 * 119.93270 * 180.02562 * 22 18 17 39 39 H 1.08003 * 120.06190 * 180.02562 * 23 22 18 40 40 H 1.07998 * 120.05930 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6791 -4.1693 1.1983 12 6 3.5775 -5.2208 1.2056 13 6 4.0319 -5.7520 0.0152 14 6 3.5878 -5.2236 -1.1949 15 6 4.0776 -5.7864 -2.4777 16 6 3.6290 -5.2617 -3.6880 17 6 4.0925 -5.7849 -4.8781 18 6 4.9913 -6.8363 -4.8708 19 6 5.4887 -7.4077 -6.1735 20 6 4.5610 -8.5388 -6.6215 21 8 5.0329 -9.0812 -7.8565 22 6 5.4355 -7.3647 -3.6721 23 6 4.9832 -6.8453 -2.4762 24 6 2.6775 -4.1683 -1.1964 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.3266 -3.7564 2.1319 29 1 3.9242 -5.6270 2.1443 30 1 4.7338 -6.5728 0.0221 31 1 2.9232 -4.4442 -3.6949 32 1 3.7489 -5.3761 -5.8168 33 1 5.5007 -6.6254 -6.9324 34 1 6.4975 -7.7975 -6.0376 35 1 4.5490 -9.3211 -5.8626 36 1 3.5521 -8.1491 -6.7574 37 1 4.4913 -9.8044 -8.2010 38 1 6.1377 -8.1854 -3.6722 39 1 5.3310 -7.2584 -1.5409 40 1 2.3266 -3.7579 -2.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243847368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:59 Heat of formation + Delta-G solvation = -24.548897 kcal Electronic energy + Delta-G solvation = -20215.192471 eV Core-core repulsion = 17151.476910 eV Total energy + Delta-G solvation = -3063.715561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.78565 -38.35389 -37.10778 -34.05603 -33.16676 -31.45948 -30.92894 -30.49704 -27.69186 -26.96193 -23.85148 -23.63596 -22.55589 -21.74586 -20.66093 -19.69675 -17.84409 -16.76110 -16.29182 -15.85630 -15.58145 -14.95051 -14.88072 -14.53643 -14.46883 -13.92934 -13.75291 -13.43990 -13.05039 -12.82575 -12.51673 -12.36135 -12.10516 -11.86148 -11.48953 -11.36298 -11.26091 -11.19332 -10.89659 -10.71712 -10.46087 -10.29905 -10.25424 -9.61173 -9.48687 -9.17906 -8.91236 -8.45773 -7.99621 -7.57049 -6.07488 -4.11385 0.92033 1.45006 2.05802 2.26786 3.27540 3.35387 3.40671 3.72289 4.01881 4.38480 4.58770 4.65787 4.81570 4.91599 4.93080 5.01240 5.05605 5.24717 5.27267 5.37091 5.41435 5.49408 5.53596 5.72813 5.74419 5.87305 5.93745 6.07527 6.11806 6.20430 6.34074 6.56566 6.57677 6.62168 6.70880 6.97548 7.07387 7.12583 7.18549 7.28128 7.46250 7.65763 7.79540 7.88600 8.28151 8.94213 9.52861 11.02461 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.003286 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.299177 B = 8518.118498 C = 9385.366661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.033 4.033 11 C -0.117 4.117 12 C -0.123 4.123 13 C -0.136 4.136 14 C -0.062 4.062 15 C -0.025 4.025 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.098 4.098 19 C -0.077 4.077 20 C 0.080 3.920 21 O -0.578 6.578 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.108 4.108 25 H 0.262 0.738 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.380 0.620 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 -17.088 -8.687 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.033 4.033 11 C -0.135 4.135 12 C -0.141 4.141 13 C -0.154 4.154 14 C -0.062 4.062 15 C -0.025 4.025 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.098 4.098 19 C -0.114 4.114 20 C 0.003 3.997 21 O -0.383 6.383 22 C -0.131 4.131 23 C -0.133 4.133 24 C -0.126 4.126 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.227 0.773 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.782 -16.510 -8.600 20.583 hybrid contribution -0.022 0.611 0.057 0.614 sum 8.759 -15.899 -8.543 20.062 Atomic orbital electron populations 1.69966 1.06031 1.26753 1.50536 1.25010 0.94885 0.99282 0.95148 0.86487 0.80180 0.83462 0.77664 1.19638 1.20900 1.20908 1.21089 0.93085 0.89814 1.50953 0.92411 1.18376 0.92555 0.89611 0.98459 1.20644 0.96053 0.94921 0.91723 1.21199 0.97751 0.96161 0.98435 1.20971 0.98451 0.97466 0.97241 1.20920 1.01601 1.00933 0.91922 1.18703 0.98668 0.97341 0.91485 1.18938 0.95922 0.95068 0.92618 1.21367 0.99929 1.00022 0.91508 1.20971 0.97313 0.96452 0.98074 1.19642 0.98697 0.97285 0.94174 1.20417 0.99250 0.97429 0.94304 1.22184 0.96836 0.95431 0.85295 1.86452 1.56874 1.55273 1.39735 1.20906 1.00391 1.00041 0.91811 1.21205 0.97586 0.96506 0.98033 1.21159 0.97289 0.95565 0.98592 0.92865 0.95287 0.95218 0.86302 0.86814 0.86880 0.85165 0.86012 0.90369 0.90479 0.93472 0.93345 0.77335 0.86227 0.85762 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.23 9.09 -34.44 -0.31 -14.54 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 10 C -0.03 -0.72 5.06 -104.67 -0.53 -1.25 16 11 C -0.12 -2.26 9.69 -39.52 -0.38 -2.64 16 12 C -0.12 -2.01 10.03 -39.63 -0.40 -2.41 16 13 C -0.14 -2.15 9.43 -39.25 -0.37 -2.52 16 14 C -0.06 -1.06 5.88 -104.90 -0.62 -1.68 16 15 C -0.03 -0.38 5.88 -104.90 -0.62 -1.00 16 16 C -0.11 -1.57 9.43 -39.25 -0.37 -1.94 16 17 C -0.11 -1.34 9.68 -39.63 -0.38 -1.72 16 18 C -0.10 -1.09 5.14 -104.56 -0.54 -1.63 16 19 C -0.08 -0.73 5.71 -27.88 -0.16 -0.89 16 20 C 0.08 0.68 7.03 37.16 0.26 0.94 16 21 O -0.58 -4.99 13.66 -35.23 -0.48 -5.47 16 22 C -0.11 -1.27 9.68 -39.63 -0.38 -1.66 16 23 C -0.12 -1.47 9.43 -39.26 -0.37 -1.84 16 24 C -0.11 -2.12 9.08 -39.25 -0.36 -2.47 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 30 H 0.11 1.46 6.21 -52.49 -0.33 1.13 16 31 H 0.13 1.85 6.21 -52.48 -0.33 1.52 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.38 1.54 9.12 45.56 0.42 1.95 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.38 6.21 -52.48 -0.33 1.05 16 40 H 0.12 2.29 6.21 -52.49 -0.33 1.96 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -31.36 339.45 -10.07 -41.42 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.64 Total: 2.64 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: -5.77 Total: -34.67 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.48 Total: -5.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.36 -10.07 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243847368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.876 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds