Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36268 * 120.06239 * 2 1 4 4 C 1.39914 * 120.12495 * 180.02562 * 3 2 1 5 5 C 1.47990 * 119.88445 * 179.97438 * 4 3 2 6 6 C 1.39603 * 120.14100 * 359.72389 * 5 4 3 7 7 C 1.37939 * 119.85081 * 179.69903 * 6 5 4 8 8 C 1.38385 * 120.14698 * 0.60153 * 7 6 5 9 9 C 1.50697 * 119.85810 * 179.69686 * 8 7 6 10 10 C 1.53001 * 109.47297 * 269.97775 * 9 8 7 11 11 O 1.42897 * 109.47388 * 179.97438 * 10 9 8 12 12 C 1.38394 * 120.28800 * 359.67554 * 8 7 6 13 13 C 1.37932 * 120.14703 * 0.02562 * 12 8 7 14 14 C 1.39958 * 120.23722 * 359.97438 * 4 3 2 15 15 C 1.36235 * 120.11897 * 359.72960 * 14 4 3 16 16 C 1.40913 * 120.06238 * 180.02562 * 2 1 3 17 17 C 1.41030 * 120.11691 * 359.94959 * 16 2 1 18 18 H 1.07995 * 120.00138 * 26.82366 * 17 16 2 19 19 C 1.40010 * 119.99977 * 206.81658 * 17 16 2 20 20 N 1.30803 * 120.00071 * 16.41847 * 19 17 16 21 21 Si 1.86801 * 120.00190 * 196.41450 * 19 17 16 22 22 H 1.48503 * 109.47146 * 265.19293 * 21 19 17 23 23 H 1.48498 * 109.46683 * 25.18684 * 21 19 17 24 24 H 1.48496 * 109.47344 * 145.18729 * 21 19 17 25 25 H 1.08996 * 109.46802 * 269.97476 * 1 2 3 26 26 H 1.08996 * 109.47275 * 29.97981 * 1 2 3 27 27 H 1.09001 * 109.46754 * 149.97412 * 1 2 3 28 28 H 1.08002 * 119.94042 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.07606 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.92794 * 180.29587 * 7 6 5 31 31 H 1.09002 * 109.47169 * 29.97469 * 9 8 7 32 32 H 1.08996 * 109.47385 * 149.98065 * 9 8 7 33 33 H 1.09000 * 109.47396 * 300.00338 * 10 9 8 34 34 H 1.09008 * 109.47037 * 59.99939 * 10 9 8 35 35 H 0.96701 * 113.99734 * 179.97438 * 11 10 9 36 36 H 1.08002 * 119.92784 * 180.02562 * 12 8 7 37 37 H 1.08001 * 120.07376 * 180.02562 * 13 12 8 38 38 H 1.07997 * 119.93819 * 180.02562 * 14 4 3 39 39 H 1.08003 * 120.06221 * 180.27639 * 15 14 4 40 40 H 0.97001 * 120.00003 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5887 1.1809 -0.0005 5 6 4.3247 2.4648 -0.0011 6 6 3.6259 3.6734 -0.0069 7 6 4.3179 4.8666 -0.0011 8 6 5.7017 4.8675 -0.0022 9 6 6.4511 6.1749 -0.0027 10 6 6.7042 6.6171 -1.4454 11 8 7.4143 7.8572 -1.4460 12 6 6.4005 3.6729 -0.0022 13 6 5.7207 2.4727 -0.0018 14 6 4.2948 -0.0275 -0.0005 15 6 3.6223 -1.2123 0.0055 16 6 2.2129 -1.2196 -0.0005 17 6 1.5115 -2.4431 0.0000 18 1 0.5186 -2.4966 -0.4213 19 6 2.1027 -3.5886 0.5465 20 7 3.1425 -3.4766 1.3321 21 14 1.4063 -5.2770 0.1540 22 1 0.4589 -5.6825 1.2232 23 1 0.6925 -5.2275 -1.1472 24 1 2.5139 -6.2629 0.0739 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6496 2.1147 0.0004 29 1 2.5459 3.6741 -0.0114 30 1 3.7785 5.8023 -0.0008 31 1 5.8599 6.9329 0.5111 32 1 7.4042 6.0477 0.5107 33 1 7.2954 5.8592 -1.9594 34 1 5.7511 6.7444 -1.9589 35 1 7.6098 8.1980 -2.3296 36 1 7.4805 3.6804 -0.0026 37 1 6.2672 1.5412 -0.0014 38 1 5.3748 -0.0207 -0.0005 39 1 4.1682 -2.1442 0.0100 40 1 3.5518 -4.2702 1.7111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243849873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = -30.612655 kcal Electronic energy + Delta-G solvation = -20488.132651 eV Core-core repulsion = 17424.154146 eV Total energy + Delta-G solvation = -3063.978505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.18623 -37.79375 -36.87800 -34.20696 -32.99558 -31.53353 -30.56345 -29.85213 -27.81849 -26.24399 -24.83265 -23.03335 -22.36615 -21.24278 -20.11736 -19.22405 -17.64693 -17.35881 -16.07288 -15.56616 -15.30776 -14.79172 -14.39161 -14.26727 -13.96927 -13.47324 -13.18933 -13.03691 -12.79453 -12.64982 -12.30273 -11.87261 -11.83629 -11.74078 -11.40484 -11.31392 -11.18828 -11.14247 -10.76936 -10.64866 -10.50782 -10.41585 -10.08031 -9.61721 -9.42461 -9.32034 -8.49772 -8.47626 -7.49960 -7.06525 -6.89126 -4.44671 1.52441 1.88967 2.73283 2.97091 3.00349 3.01558 3.13910 3.78687 4.05982 4.30301 4.66896 4.93003 5.17813 5.23462 5.31937 5.39462 5.51925 5.54573 5.68156 5.73149 5.90477 5.99169 6.07093 6.15246 6.17724 6.31122 6.49878 6.53821 6.61893 6.66218 6.79394 6.88622 6.95927 6.99776 7.03174 7.16158 7.35947 7.44233 7.48803 7.54174 7.83111 7.90844 8.03654 8.14580 8.46535 8.69793 8.81916 9.97968 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.038296 B = 0.003124 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.977045 B = 8961.412926 C = 9482.063586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.201 4.201 3 C -0.061 4.061 4 C -0.203 4.203 5 C 0.026 3.974 6 C -0.146 4.146 7 C -0.103 4.103 8 C -0.133 4.133 9 C -0.069 4.069 10 C 0.080 3.920 11 O -0.579 6.579 12 C -0.103 4.103 13 C -0.144 4.144 14 C -0.078 4.078 15 C -0.169 4.169 16 C 0.124 3.876 17 C -0.445 4.445 18 H 0.085 0.915 19 C 0.073 3.927 20 N -0.780 5.780 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.259 1.259 24 H -0.274 1.274 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.377 0.623 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 10.115 -3.746 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 C -0.079 4.079 4 C -0.204 4.204 5 C 0.026 3.974 6 C -0.164 4.164 7 C -0.121 4.121 8 C -0.134 4.134 9 C -0.106 4.106 10 C 0.002 3.998 11 O -0.385 6.385 12 C -0.121 4.121 13 C -0.162 4.162 14 C -0.096 4.096 15 C -0.188 4.188 16 C 0.121 3.879 17 C -0.473 4.473 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.404 5.404 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.182 1.182 24 H -0.199 1.199 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.224 0.776 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.720 9.866 -2.939 10.946 hybrid contribution -0.156 -0.822 -0.606 1.033 sum 3.563 9.044 -3.545 10.347 Atomic orbital electron populations 1.20402 0.93387 1.00177 1.00105 1.19458 0.94527 0.93034 1.13228 1.20266 0.92840 0.96092 0.98711 1.18072 0.92527 0.90614 1.19226 1.19041 0.92519 0.92990 0.92869 1.21175 0.99665 0.91731 1.03792 1.20811 0.93378 0.97514 1.00394 1.19416 0.93590 0.93738 1.06626 1.20319 1.00366 0.94494 0.95468 1.22242 0.95056 0.84882 0.97604 1.86453 1.78708 1.39571 1.33736 1.20822 0.98885 0.92040 1.00332 1.21196 0.93962 0.97523 1.03533 1.20526 0.97384 0.92476 0.99260 1.20966 0.94466 0.96599 1.06788 1.17592 0.91915 0.91734 0.86662 1.19727 1.02413 0.92636 1.32486 0.89672 1.26023 0.94143 1.01730 0.92768 1.69815 1.17889 1.32299 1.20365 0.86265 0.79568 0.80580 0.80249 1.19360 1.18230 1.19852 0.93552 0.94397 0.92348 0.88937 0.86353 0.87049 0.90965 0.90957 0.93524 0.93544 0.77606 0.87023 0.86249 0.89020 0.86438 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 9.61 36.00 0.35 -1.33 16 2 C -0.20 -4.69 5.90 -104.32 -0.62 -5.31 16 3 C -0.06 -1.34 9.00 -39.66 -0.36 -1.70 16 4 C -0.20 -4.50 5.90 -104.63 -0.62 -5.12 16 5 C 0.03 0.50 5.88 -104.88 -0.62 -0.11 16 6 C -0.15 -2.53 9.43 -39.18 -0.37 -2.90 16 7 C -0.10 -1.56 9.68 -39.64 -0.38 -1.94 16 8 C -0.13 -1.93 5.14 -104.51 -0.54 -2.47 16 9 C -0.07 -0.84 5.71 -27.88 -0.16 -1.00 16 10 C 0.08 0.87 7.03 37.16 0.26 1.13 16 11 O -0.58 -6.08 13.66 -35.23 -0.48 -6.56 16 12 C -0.10 -1.57 9.68 -39.64 -0.38 -1.95 16 13 C -0.14 -2.54 9.43 -39.18 -0.37 -2.91 16 14 C -0.08 -1.79 9.36 -39.66 -0.37 -2.17 16 15 C -0.17 -4.23 8.61 -39.28 -0.34 -4.57 16 16 C 0.12 3.14 5.56 -106.80 -0.59 2.55 16 17 C -0.44 -11.04 8.43 -37.86 -0.32 -11.36 16 18 H 0.09 2.01 6.27 -52.49 -0.33 1.68 16 19 C 0.07 1.73 5.15 -17.33 -0.09 1.64 16 20 N -0.78 -19.17 10.99 55.55 0.61 -18.56 16 21 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.06 1.15 6.26 -51.93 -0.32 0.82 16 28 H 0.09 1.81 6.18 -52.49 -0.32 1.49 16 29 H 0.12 1.95 6.18 -52.49 -0.32 1.62 16 30 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.38 2.16 9.12 45.56 0.42 2.57 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.12 2.03 6.18 -52.49 -0.32 1.70 16 38 H 0.09 1.90 6.18 -52.49 -0.32 1.58 16 39 H 0.12 3.02 6.24 -52.48 -0.33 2.69 16 40 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -27.51 330.73 -9.80 -37.31 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.37 Total: 9.77 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: -5.51 Total: -39.52 kcal Atomic # 7 Polarization: -19.17 SS G_CDS: 0.61 Total: -18.56 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.48 Total: -6.56 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.51 -9.80 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243849873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.701 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds