Wall clock time and date at job start Tue Mar 31 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35810 * 116.99731 * 2 1 4 4 C 1.38987 * 119.91039 * 359.97438 * 3 2 1 5 5 C 1.37737 * 120.09363 * 179.76375 * 4 3 2 6 6 C 1.39763 * 119.90658 * 0.52733 * 5 4 3 7 7 C 1.47770 * 120.08958 * 179.74494 * 6 5 4 8 8 C 1.39228 * 120.34194 * 64.70583 * 7 6 5 9 9 C 1.38033 * 119.97826 * 180.02562 * 8 7 6 10 10 C 1.38959 * 120.68452 * 359.74566 * 9 8 7 11 11 C 1.36405 * 120.69769 * 0.51122 * 10 9 8 12 12 C 1.40765 * 119.99232 * 359.49511 * 11 10 9 13 13 C 1.40842 * 120.33979 * 180.23382 * 12 11 10 14 14 H 1.07996 * 120.00020 * 204.79169 * 13 12 11 15 15 C 1.40049 * 119.99938 * 24.78783 * 13 12 11 16 16 N 1.30793 * 119.99720 * 17.64497 * 15 13 12 17 17 Si 1.86796 * 119.99888 * 197.64786 * 15 13 12 18 18 H 1.48494 * 109.47430 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47193 * 120.00433 * 17 15 13 20 20 H 1.48499 * 109.46984 * 239.99645 * 17 15 13 21 21 C 1.39720 * 119.81330 * 359.46968 * 6 5 4 22 22 C 1.50701 * 120.04427 * 180.27316 * 21 6 5 23 23 C 1.37783 * 119.90972 * 0.25282 * 21 6 5 24 24 C 1.50699 * 119.95419 * 179.97438 * 23 21 6 25 25 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47577 * 299.99946 * 1 2 3 27 27 H 1.09003 * 109.47077 * 60.00276 * 1 2 3 28 28 H 1.07998 * 119.94997 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.04502 * 180.26922 * 5 4 3 30 30 H 1.08002 * 120.01228 * 0.03466 * 8 7 6 31 31 H 1.08001 * 119.65740 * 179.97438 * 9 8 7 32 32 H 1.07995 * 119.65192 * 180.28481 * 10 9 8 33 33 H 1.08000 * 120.00717 * 179.77337 * 11 10 9 34 34 H 0.97000 * 119.99693 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.46612 * 90.00199 * 22 21 6 36 36 H 1.08997 * 109.47490 * 209.99986 * 22 21 6 37 37 H 1.09000 * 109.47294 * 330.00478 * 22 21 6 38 38 H 1.09001 * 109.46920 * 89.99941 * 24 23 21 39 39 H 1.08994 * 109.46989 * 209.99882 * 24 23 21 40 40 H 1.08997 * 109.47030 * 329.99950 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2867 2.3745 -0.0005 5 6 1.9080 3.6038 0.0044 6 6 3.3035 3.6792 -0.0012 7 6 3.9743 4.9959 -0.0017 8 6 3.8406 5.8537 1.0867 9 6 4.4700 7.0822 1.0782 10 6 5.2445 7.4746 -0.0068 11 6 5.3902 6.6583 -1.0899 12 6 4.7611 5.3992 -1.1118 13 6 4.9105 4.5485 -2.2243 14 1 4.1587 3.8037 -2.4394 15 6 6.0342 4.6685 -3.0516 16 7 7.0948 5.3044 -2.6257 17 14 6.0180 3.9204 -4.7631 18 1 4.7095 3.2605 -5.0026 19 1 6.2247 4.9897 -5.7727 20 1 7.1069 2.9170 -4.8750 21 6 4.0626 2.5062 -0.0006 22 6 5.5678 2.5815 -0.0004 23 6 3.4332 1.2806 0.0003 24 6 4.2510 0.0147 0.0004 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2083 2.3153 -0.0005 29 1 1.3175 4.5081 0.0083 30 1 3.2447 5.5581 1.9376 31 1 4.3624 7.7437 1.9250 32 1 5.7333 8.4375 0.0060 33 1 5.9918 6.9760 -1.9287 34 1 7.8732 5.3872 -3.1986 35 1 5.9304 2.6001 1.0273 36 1 5.9752 1.7106 -0.5138 37 1 5.8863 3.4883 -0.5145 38 1 4.4487 -0.2900 1.0281 39 1 3.7003 -0.7736 -0.5128 40 1 5.1954 0.1923 -0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243999927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:56 Heat of formation + Delta-G solvation = -6.485999 kcal Electronic energy + Delta-G solvation = -22037.043412 eV Core-core repulsion = 18974.111117 eV Total energy + Delta-G solvation = -3062.932295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82846 -38.08584 -36.57070 -33.79394 -32.80552 -31.61413 -29.54458 -28.82037 -27.29048 -26.57316 -25.44295 -25.00766 -21.88909 -20.89355 -20.08401 -19.31617 -17.26218 -17.13402 -15.98381 -15.59541 -15.47044 -14.96199 -14.16962 -13.87222 -13.71160 -13.39936 -13.08473 -12.84762 -12.62512 -12.46062 -12.12264 -11.82946 -11.73442 -11.63301 -11.54802 -11.23702 -11.13070 -11.03196 -10.78563 -10.53495 -10.45362 -10.33710 -10.06469 -9.59817 -9.41257 -9.13065 -7.93901 -7.64239 -7.41041 -7.07477 -6.78246 -4.37813 2.00747 2.02872 2.74633 3.00350 3.05979 3.12227 3.21428 3.63261 3.90283 4.39041 4.59336 5.16068 5.27003 5.30523 5.42400 5.54117 5.64712 5.68193 5.86146 5.93721 6.06082 6.10357 6.19494 6.23644 6.40381 6.44290 6.53824 6.57264 6.64427 6.76715 6.93647 7.00666 7.08789 7.20192 7.26162 7.36886 7.46385 7.57159 7.60075 7.84704 7.94321 8.06539 8.10467 8.24436 8.59768 8.83474 8.93093 10.09525 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.006965 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.708778 B = 4019.148597 C = 5142.939792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.101 3.899 4 C -0.214 4.214 5 C -0.090 4.090 6 C -0.011 4.011 7 C -0.178 4.178 8 C -0.074 4.074 9 C -0.244 4.244 10 C -0.103 4.103 11 C -0.162 4.162 12 C 0.128 3.872 13 C -0.444 4.444 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.787 5.787 17 Si 0.899 3.101 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.273 1.273 21 C -0.023 4.023 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.101 4.101 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.281 0.719 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 -6.583 2.374 9.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.057 3.943 4 C -0.233 4.233 5 C -0.109 4.109 6 C -0.012 4.012 7 C -0.180 4.180 8 C -0.092 4.092 9 C -0.264 4.264 10 C -0.121 4.121 11 C -0.181 4.181 12 C 0.125 3.875 13 C -0.473 4.473 14 H 0.099 0.901 15 C -0.140 4.140 16 N -0.412 5.412 17 Si 0.724 3.276 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.198 1.198 21 C -0.023 4.023 22 C -0.183 4.183 23 C -0.126 4.126 24 C -0.158 4.158 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.860 -6.726 2.296 9.211 hybrid contribution -0.325 -0.073 -0.752 0.822 sum -6.184 -6.800 1.544 9.320 Atomic orbital electron populations 1.22913 0.79569 1.02916 1.01031 1.85969 1.20346 1.27661 1.89540 1.18746 0.91606 0.83554 1.00355 1.20922 0.98872 0.92462 1.11026 1.21045 0.94249 0.96215 0.99356 1.18599 0.91537 0.92824 0.98205 1.18492 1.09543 0.93579 0.96359 1.20537 0.98590 0.93864 0.96227 1.20245 1.07846 0.98294 0.99973 1.20451 0.98634 0.98141 0.94920 1.21050 1.04236 0.94199 0.98623 1.17492 0.88527 0.91154 0.90307 1.19507 1.04904 1.15705 1.07178 0.90113 1.25910 0.94639 0.93918 0.99567 1.69813 1.02573 1.32477 1.36309 0.86378 0.79675 0.79546 0.82039 1.18248 1.19684 1.19846 1.19756 0.96405 0.90439 0.95742 1.21127 0.90517 1.05371 1.01267 1.18952 0.90141 0.95607 1.07883 1.20594 0.99207 0.94515 1.01456 0.89044 0.93156 0.93099 0.86606 0.86542 0.89473 0.89629 0.89664 0.86394 0.90778 0.92716 0.92670 0.86741 0.92227 0.92070 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.09 9.52 -19.15 -0.18 -5.27 16 3 C 0.10 1.83 6.67 -39.04 -0.26 1.57 16 4 C -0.21 -3.74 9.02 -39.49 -0.36 -4.09 16 5 C -0.09 -1.76 9.74 -39.19 -0.38 -2.14 16 6 C -0.01 -0.25 4.38 -104.88 -0.46 -0.71 16 7 C -0.18 -4.19 4.66 -104.23 -0.49 -4.67 16 8 C -0.07 -1.66 9.73 -39.29 -0.38 -2.04 16 9 C -0.24 -5.41 10.03 -39.39 -0.40 -5.81 16 10 C -0.10 -2.37 9.96 -39.97 -0.40 -2.77 16 11 C -0.16 -4.05 8.64 -39.29 -0.34 -4.39 16 12 C 0.13 3.21 4.53 -106.55 -0.48 2.73 16 13 C -0.44 -11.09 6.17 -37.92 -0.23 -11.32 16 14 H 0.08 2.07 7.07 -52.49 -0.37 1.70 16 15 C 0.08 1.86 5.14 -17.32 -0.09 1.78 16 16 N -0.79 -19.13 10.96 55.55 0.61 -18.52 16 17 Si 0.90 18.33 29.60 -169.99 -5.03 13.30 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.02 -0.48 5.32 -104.23 -0.55 -1.04 16 22 C -0.13 -2.61 8.86 36.01 0.32 -2.29 16 23 C -0.13 -2.38 5.89 -104.53 -0.62 -2.99 16 24 C -0.10 -1.62 9.38 36.00 0.34 -1.29 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 27 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 28 H 0.12 1.67 6.28 -52.49 -0.33 1.34 16 29 H 0.12 2.13 8.06 -52.48 -0.42 1.70 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.12 3.03 6.17 -52.49 -0.32 2.71 16 34 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.03 5.94 -51.93 -0.31 0.72 16 37 H 0.11 2.72 4.33 -51.93 -0.23 2.50 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.93 7.52 -51.93 -0.39 0.54 16 40 H 0.07 1.06 5.94 -51.93 -0.31 0.75 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -26.63 322.81 -8.67 -35.30 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.15 Total: 8.46 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: -3.79 Total: -38.13 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.61 Total: -18.52 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.18 Total: -5.27 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.63 -8.67 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243999927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.815 kcal (2) G-P(sol) polarization free energy of solvation -26.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds