Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38342 * 119.87693 * 2 1 4 4 C 1.37996 * 120.12457 * 179.97438 * 3 2 1 5 5 C 1.39360 * 119.87466 * 359.80914 * 4 3 2 6 6 C 1.48391 * 120.12191 * 180.22860 * 5 4 3 7 7 C 1.39340 * 120.11830 * 129.95779 * 6 5 4 8 8 C 1.38020 * 119.87449 * 179.69758 * 7 6 5 9 9 C 1.38325 * 120.12254 * 0.60397 * 8 7 6 10 10 C 1.50696 * 119.87798 * 179.69715 * 9 8 7 11 11 C 1.50700 * 109.46917 * 269.97422 * 10 9 8 12 12 H 1.07994 * 120.00091 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99975 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00196 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00236 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46929 * 90.00070 * 15 13 11 17 17 H 1.48497 * 109.46927 * 210.00377 * 15 13 11 18 18 H 1.48506 * 109.46762 * 330.00110 * 15 13 11 19 19 C 1.38327 * 120.24141 * 359.67146 * 9 8 7 20 20 C 1.38016 * 120.11905 * 0.02562 * 19 9 8 21 21 C 1.39315 * 119.75746 * 0.46456 * 5 4 3 22 22 C 1.50706 * 120.06331 * 179.76987 * 21 5 4 23 23 O 1.42894 * 109.47263 * 179.72064 * 22 21 5 24 24 C 1.38038 * 119.88002 * 359.49212 * 21 5 4 25 25 H 1.09003 * 109.47400 * 269.97558 * 1 2 3 26 26 H 1.08998 * 109.47221 * 29.98301 * 1 2 3 27 27 H 1.09003 * 109.46742 * 149.98014 * 1 2 3 28 28 H 1.08005 * 119.93992 * 359.97438 * 3 2 1 29 29 H 1.07992 * 120.06675 * 180.02562 * 4 3 2 30 30 H 1.07996 * 120.06304 * 0.02562 * 7 6 5 31 31 H 1.07999 * 119.93641 * 180.27276 * 8 7 6 32 32 H 1.08995 * 109.47343 * 29.97447 * 10 9 8 33 33 H 1.09004 * 109.47097 * 149.97653 * 10 9 8 34 34 H 0.96996 * 120.00107 * 179.97438 * 14 13 11 35 35 H 1.07997 * 119.93476 * 179.97438 * 19 9 8 36 36 H 1.08006 * 120.05574 * 180.02562 * 20 19 9 37 37 H 1.09001 * 109.46564 * 299.72490 * 22 21 5 38 38 H 1.08998 * 109.47012 * 59.71544 * 22 21 5 39 39 H 0.96696 * 113.99826 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.94194 * 180.25777 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1996 0.0000 4 6 3.5760 1.2055 0.0005 5 6 4.2754 0.0001 0.0051 6 6 5.7593 0.0001 0.0108 7 6 6.4550 -0.7725 0.9386 8 6 7.8351 -0.7735 0.9353 9 6 8.5278 0.0001 0.0215 10 6 10.0347 0.0001 0.0274 11 6 10.5335 1.0862 0.9453 12 1 9.8297 1.7134 1.4721 13 6 11.8884 1.2791 1.1126 14 7 12.7456 0.5156 0.4707 15 14 12.5068 2.6249 2.2511 16 1 12.6671 2.0782 3.6224 17 1 13.8164 3.1247 1.7610 18 1 11.5281 3.7416 2.2746 19 6 7.8422 0.7734 -0.8980 20 6 6.4621 0.7772 -0.9077 21 6 3.5764 -1.2049 -0.0007 22 6 4.3257 -2.5125 -0.0011 23 8 3.3937 -3.5956 -0.0009 24 6 2.1960 -1.1992 -0.0003 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6531 2.1332 -0.0004 29 1 4.1131 2.1425 0.0010 30 1 5.9152 -1.3734 1.6554 31 1 8.3753 -1.3754 1.6511 32 1 10.3967 -0.9665 0.3778 33 1 10.4020 0.1811 -0.9829 34 1 13.6988 0.6516 0.5881 35 1 8.3880 1.3759 -1.6089 36 1 5.9279 1.3810 -1.6264 37 1 4.9520 -2.5720 -0.8912 38 1 4.9525 -2.5722 0.8887 39 1 3.8069 -4.4699 -0.0015 40 1 1.6531 -2.1328 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244489541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = -21.822516 kcal Electronic energy + Delta-G solvation = -20683.153671 eV Core-core repulsion = 17619.556335 eV Total energy + Delta-G solvation = -3063.597336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98213 -38.26074 -36.76472 -34.18384 -32.87071 -31.51897 -30.84190 -30.29662 -27.90395 -26.42028 -25.59385 -23.21630 -22.30955 -21.56447 -20.69104 -19.96601 -17.42174 -16.79445 -16.33824 -15.36778 -15.20956 -15.11522 -14.82516 -14.33453 -14.15982 -14.05285 -13.76375 -13.70967 -12.86107 -12.69782 -12.64563 -12.35788 -12.15761 -12.03398 -11.74330 -11.35653 -11.30099 -10.94502 -10.87747 -10.75872 -10.51159 -10.41553 -10.18205 -9.60134 -9.49724 -8.75583 -8.59855 -8.46687 -8.36858 -7.57158 -6.08329 -4.12583 1.11386 1.42973 1.98440 2.11736 3.27933 3.34316 3.38511 3.73251 4.07847 4.32618 4.49053 4.76121 4.80283 4.93084 5.03750 5.18361 5.26374 5.31342 5.40626 5.45963 5.48101 5.49881 5.59286 5.67534 5.74054 5.91695 6.00390 6.07463 6.16261 6.20383 6.34675 6.55171 6.58264 6.61998 6.71046 6.99596 7.03493 7.11555 7.13898 7.44760 7.49286 7.64400 7.78645 7.87341 8.26754 8.92757 9.51609 11.01425 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.003425 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.581217 B = 8173.709314 C = 8758.860769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.107 4.107 5 C -0.027 4.027 6 C -0.090 4.090 7 C -0.111 4.111 8 C -0.124 4.124 9 C -0.025 4.025 10 C 0.046 3.954 11 C -0.512 4.512 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.124 4.124 20 C -0.104 4.104 21 C -0.081 4.081 22 C 0.113 3.887 23 O -0.574 6.574 24 C -0.097 4.097 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.382 0.618 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.517 -3.944 -1.753 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.125 4.125 5 C -0.027 4.027 6 C -0.090 4.090 7 C -0.129 4.129 8 C -0.142 4.142 9 C -0.025 4.025 10 C 0.009 3.991 11 C -0.551 4.551 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.142 4.142 20 C -0.122 4.122 21 C -0.081 4.081 22 C 0.036 3.964 23 O -0.380 6.380 24 C -0.115 4.115 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.229 0.771 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.753 -3.474 -1.784 21.118 hybrid contribution 0.966 0.399 0.656 1.234 sum -19.788 -3.075 -1.127 20.057 Atomic orbital electron populations 1.20753 0.91419 1.02491 1.02082 1.19935 0.95947 0.93150 1.00931 1.20946 0.94030 0.97392 1.01482 1.21172 0.93834 0.97338 1.00163 1.18590 0.92224 0.92177 0.99736 1.18499 0.90521 1.01078 0.98872 1.21104 0.94267 0.99298 0.98242 1.21032 0.93094 1.00612 0.99476 1.20792 0.99034 0.91242 0.91451 1.18393 0.84458 0.98069 0.98199 1.21044 0.91472 1.16267 1.26281 0.92443 1.25013 0.96872 0.96399 0.96022 1.69955 1.02138 1.38988 1.42207 0.86529 0.78218 0.82070 0.80867 1.20556 1.21127 1.19774 1.21048 0.93208 0.99925 0.99998 1.21065 0.94202 0.98586 0.98309 1.19687 0.93843 0.93158 1.01378 1.21111 0.89958 0.84121 1.01191 1.86380 1.36651 1.17115 1.97851 1.20755 0.93344 0.97645 0.99752 0.91422 0.91767 0.91702 0.86213 0.85696 0.86827 0.86200 0.95264 0.95238 0.92793 0.86175 0.86890 0.91988 0.91409 0.77129 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.10 -1.16 5.88 -104.56 -0.62 -1.77 16 3 C -0.12 -1.41 9.68 -39.63 -0.38 -1.80 16 4 C -0.11 -1.42 9.51 -39.25 -0.37 -1.80 16 5 C -0.03 -0.40 5.48 -104.90 -0.57 -0.97 16 6 C -0.09 -1.44 5.09 -104.90 -0.53 -1.98 16 7 C -0.11 -1.82 8.21 -39.25 -0.32 -2.14 16 8 C -0.12 -2.34 9.68 -39.63 -0.38 -2.73 16 9 C -0.03 -0.53 5.07 -104.56 -0.53 -1.06 16 10 C 0.05 1.15 5.10 -29.04 -0.15 1.00 16 11 C -0.51 -14.18 9.09 -34.44 -0.31 -14.49 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.12 -2.36 9.68 -39.63 -0.38 -2.75 16 20 C -0.10 -1.73 9.51 -39.26 -0.37 -2.10 16 21 C -0.08 -1.11 5.87 -104.29 -0.61 -1.72 16 22 C 0.11 1.38 6.03 36.01 0.22 1.59 16 23 O -0.57 -6.18 12.14 -35.23 -0.43 -6.60 16 24 C -0.10 -1.25 9.02 -39.63 -0.36 -1.60 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.13 1.55 8.04 -52.49 -0.42 1.13 16 30 H 0.11 1.62 6.25 -52.49 -0.33 1.29 16 31 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.11 1.64 8.04 -52.48 -0.42 1.21 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.80 5.51 -51.93 -0.29 0.51 16 39 H 0.38 2.34 9.12 45.56 0.42 2.75 16 40 H 0.13 1.59 7.00 -52.49 -0.37 1.22 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -30.91 337.44 -9.80 -40.70 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.74 Total: 3.22 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -5.43 Total: -33.36 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.43 Total: -6.60 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.91 -9.80 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244489541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.880 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds