Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 120.05543 * 2 1 4 4 C 1.38299 * 120.11658 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.87581 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.47435 * 89.99857 * 5 4 3 7 7 C 1.38341 * 120.24617 * 359.97188 * 4 3 2 8 8 C 1.38004 * 120.12235 * 359.77315 * 7 4 3 9 9 C 1.39308 * 120.06333 * 179.97438 * 2 1 3 10 10 C 1.48391 * 120.12359 * 0.02958 * 9 2 1 11 11 C 1.39355 * 120.11827 * 310.00074 * 10 9 2 12 12 C 1.38002 * 119.87888 * 180.02562 * 11 10 9 13 13 C 1.38337 * 120.11651 * 359.97438 * 12 11 10 14 14 C 1.38294 * 120.25105 * 0.04503 * 13 12 11 15 15 C 1.50700 * 119.94417 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47000 * 269.98132 * 15 14 13 17 17 H 1.08001 * 120.00412 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00205 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00150 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47098 * 90.00028 * 20 18 16 22 22 H 1.48494 * 109.47396 * 210.00176 * 20 18 16 23 23 H 1.48508 * 109.46944 * 330.00395 * 20 18 16 24 24 C 1.38045 * 120.11514 * 359.95458 * 14 13 12 25 25 H 1.08994 * 109.47316 * 270.02389 * 1 2 3 26 26 H 1.09006 * 109.47110 * 30.03011 * 1 2 3 27 27 H 1.09007 * 109.46629 * 150.01880 * 1 2 3 28 28 H 1.07996 * 119.94094 * 359.95231 * 3 2 1 29 29 H 1.09000 * 109.46984 * 209.99660 * 5 4 3 30 30 H 1.08998 * 109.47100 * 329.99602 * 5 4 3 31 31 H 0.96698 * 114.00159 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.93747 * 180.02562 * 7 4 3 33 33 H 1.07997 * 120.06405 * 180.27549 * 8 7 4 34 34 H 1.08005 * 120.06325 * 359.74129 * 11 10 9 35 35 H 1.08000 * 119.93974 * 180.02562 * 12 11 10 36 36 H 1.08004 * 119.87159 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46659 * 29.97909 * 15 14 13 38 38 H 1.08994 * 109.46915 * 149.98053 * 15 14 13 39 39 H 0.96998 * 119.99583 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.05618 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1948 0.0000 4 6 3.5814 1.1963 0.0005 5 6 4.3307 2.5039 0.0011 6 8 4.5670 2.9169 1.3485 7 6 4.2795 0.0020 0.0017 8 6 3.5985 -1.1983 0.0070 9 6 2.2049 -1.2057 0.0005 10 6 1.4671 -2.4932 0.0005 11 6 0.4468 -2.7145 0.9234 12 6 -0.2357 -3.9139 0.9193 13 6 0.0911 -4.8953 0.0007 14 6 1.1030 -4.6813 -0.9172 15 6 1.4537 -5.7554 -1.9144 16 6 2.5146 -6.6538 -1.3327 17 1 2.8970 -6.4656 -0.3404 18 6 2.9978 -7.7155 -2.0677 19 7 3.9240 -8.4992 -1.5603 20 14 2.3369 -8.0407 -3.7844 21 1 3.1558 -7.3013 -4.7784 22 1 2.4031 -9.4959 -4.0728 23 1 0.9264 -7.5834 -3.8667 24 6 1.7923 -3.4852 -0.9220 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6584 2.1301 -0.0008 29 1 5.2837 2.3767 -0.5123 30 1 3.7394 3.2617 -0.5128 31 1 5.0466 3.7531 1.4252 32 1 5.3595 0.0089 0.0025 33 1 4.1444 -2.1301 0.0123 34 1 0.1937 -1.9505 1.6437 35 1 -1.0270 -4.0863 1.6339 36 1 -0.4460 -5.8324 0.0007 37 1 0.5647 -6.3434 -2.1426 38 1 1.8289 -5.2944 -2.8280 39 1 4.2642 -9.2459 -2.0776 40 1 2.5826 -3.3192 -1.6390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244580772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = -18.224390 kcal Electronic energy + Delta-G solvation = -20703.343356 eV Core-core repulsion = 17639.902046 eV Total energy + Delta-G solvation = -3063.441310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94375 -38.39182 -36.81132 -33.84616 -32.88094 -32.17182 -31.31810 -29.60075 -27.63516 -26.98560 -25.75707 -23.01945 -22.51614 -21.42570 -20.68459 -19.55667 -17.67603 -16.78944 -16.48319 -15.86497 -15.67753 -15.13563 -14.60702 -14.31314 -14.09193 -13.92541 -13.60841 -13.40602 -13.04513 -12.86003 -12.51496 -12.42065 -12.07978 -11.97020 -11.86088 -11.64446 -11.36206 -11.04236 -10.96370 -10.65655 -10.33134 -10.31113 -10.05840 -9.93779 -9.41025 -8.95492 -8.65741 -8.59874 -8.06188 -7.75162 -6.08946 -4.08277 1.06404 1.45796 2.01137 2.06467 3.27326 3.35233 3.37819 3.64517 4.29006 4.39173 4.39943 4.71802 4.79105 4.90220 4.98521 5.11915 5.17224 5.23091 5.33076 5.42386 5.49816 5.50468 5.68102 5.76187 5.81301 5.87897 5.96348 6.08646 6.13766 6.23061 6.33431 6.53439 6.57923 6.65165 6.67345 6.90310 6.97098 7.00339 7.04962 7.11366 7.35451 7.55687 7.56305 7.69447 8.47818 8.96350 9.51190 11.03967 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.003833 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.181703 B = 7302.567786 C = 8101.217098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.101 4.101 4 C -0.101 4.101 5 C 0.120 3.880 6 O -0.567 6.567 7 C -0.103 4.103 8 C -0.105 4.105 9 C -0.025 4.025 10 C -0.059 4.059 11 C -0.128 4.128 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.029 4.029 15 C 0.014 3.986 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.104 4.104 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.377 0.623 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.264 0.736 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 21.379 2.537 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.101 4.101 5 C 0.042 3.958 6 O -0.373 6.373 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.025 4.025 10 C -0.059 4.059 11 C -0.146 4.146 12 C -0.141 4.141 13 C -0.134 4.134 14 C -0.029 4.029 15 C -0.023 4.023 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.538 5.538 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.122 4.122 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.224 0.776 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.216 20.656 2.619 21.244 hybrid contribution 0.242 0.143 -0.974 1.014 sum -3.974 20.799 1.645 21.239 Atomic orbital electron populations 1.20888 0.91054 1.02923 1.02238 1.19905 0.96103 0.91988 0.99991 1.20758 0.93229 0.97305 1.00666 1.19546 0.93625 0.93949 1.02963 1.20964 0.97982 0.93228 0.83600 1.86599 1.80047 1.44090 1.26567 1.20933 0.99703 0.91673 0.99810 1.21336 0.93382 0.98356 0.99233 1.18830 0.92861 0.91990 0.98809 1.18631 0.96930 0.92798 0.97546 1.20953 0.96831 0.97604 0.99170 1.20960 1.00162 0.93858 0.99155 1.21138 0.98107 0.98679 0.95494 1.20207 0.92486 0.94123 0.96099 1.18817 0.97607 0.92581 0.93310 1.20925 1.19993 1.10542 1.03649 0.90804 1.24999 0.94589 0.95629 0.98015 1.69903 1.28625 1.17399 1.37855 0.86812 0.80204 0.77501 0.85042 1.20153 1.21234 1.18918 1.21094 0.99619 0.92623 0.98841 0.91230 0.92036 0.90620 0.86238 0.92824 0.92974 0.77604 0.86026 0.85194 0.86841 0.86712 0.86299 0.95346 0.95859 0.92588 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.45 36.01 0.30 -0.99 16 2 C -0.08 -1.08 5.87 -104.29 -0.61 -1.69 16 3 C -0.10 -1.25 9.34 -39.63 -0.37 -1.62 16 4 C -0.10 -1.24 5.51 -104.56 -0.58 -1.82 16 5 C 0.12 1.11 7.16 36.01 0.26 1.37 16 6 O -0.57 -5.58 13.64 -35.23 -0.48 -6.06 16 7 C -0.10 -1.36 9.68 -39.63 -0.38 -1.75 16 8 C -0.11 -1.58 9.52 -39.25 -0.37 -1.95 16 9 C -0.02 -0.38 5.47 -104.90 -0.57 -0.96 16 10 C -0.06 -1.00 4.72 -104.90 -0.50 -1.50 16 11 C -0.13 -2.00 7.90 -39.25 -0.31 -2.31 16 12 C -0.12 -1.98 10.03 -39.63 -0.40 -2.38 16 13 C -0.12 -2.18 9.69 -39.52 -0.38 -2.56 16 14 C -0.03 -0.61 5.06 -104.67 -0.53 -1.14 16 15 C 0.01 0.33 4.17 -29.04 -0.12 0.21 16 16 C -0.51 -14.52 9.65 -34.44 -0.33 -14.86 16 17 H 0.07 2.29 7.98 -52.49 -0.42 1.88 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 20 Si 0.88 21.31 27.47 -169.99 -4.67 16.65 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 24 C -0.10 -2.01 9.17 -39.25 -0.36 -2.36 16 25 H 0.07 0.71 7.50 -51.93 -0.39 0.33 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.07 0.94 6.45 -51.92 -0.34 0.61 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.38 1.71 9.12 45.56 0.42 2.12 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.98 8.05 -52.49 -0.42 1.55 16 34 H 0.11 1.54 6.86 -52.48 -0.36 1.18 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 37 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 38 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.12 2.28 8.05 -52.49 -0.42 1.85 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -32.64 336.17 -9.48 -42.12 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.81 Total: 3.40 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: -5.36 Total: -34.43 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.48 Total: -6.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.64 -9.48 -42.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244580772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.895 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds