Wall clock time and date at job start Tue Mar 31 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 120.06107 * 2 1 4 4 C 1.38298 * 120.11909 * 180.29902 * 3 2 1 5 5 C 1.50695 * 119.87684 * 179.69854 * 4 3 2 6 6 O 1.42902 * 109.47288 * 269.97550 * 5 4 3 7 7 C 1.38340 * 120.24434 * 359.67452 * 4 3 2 8 8 C 1.38000 * 120.12285 * 0.04271 * 7 4 3 9 9 C 1.39317 * 120.06196 * 179.72014 * 2 1 3 10 10 C 1.48392 * 120.11711 * 359.97438 * 9 2 1 11 11 C 1.39335 * 120.11779 * 129.72959 * 10 9 2 12 12 C 1.38016 * 119.88022 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.12026 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.88066 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47122 * 269.98085 * 14 13 12 16 16 H 1.08002 * 120.00233 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00201 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99830 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00387 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46878 * 59.99928 * 19 17 15 21 21 H 1.48499 * 109.47356 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47295 * 300.00519 * 19 17 15 23 23 C 1.38324 * 120.24134 * 0.02562 * 13 12 11 24 24 C 1.38014 * 120.12255 * 359.97438 * 23 13 12 25 25 H 1.08996 * 109.47254 * 270.28260 * 1 2 3 26 26 H 1.09002 * 109.46712 * 30.28201 * 1 2 3 27 27 H 1.09001 * 109.47025 * 150.27491 * 1 2 3 28 28 H 1.07997 * 119.93714 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47240 * 29.97502 * 5 4 3 30 30 H 1.09005 * 109.47500 * 149.97612 * 5 4 3 31 31 H 0.96704 * 114.00140 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.94333 * 180.02562 * 7 4 3 33 33 H 1.08005 * 120.06431 * 179.97438 * 8 7 4 34 34 H 1.08005 * 120.06336 * 359.69661 * 11 10 9 35 35 H 1.08000 * 119.94650 * 180.02562 * 12 11 10 36 36 H 1.08991 * 109.47127 * 29.98085 * 14 13 12 37 37 H 1.09005 * 109.47047 * 149.98558 * 14 13 12 38 38 H 0.97002 * 120.00120 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.93759 * 179.97438 * 23 13 12 40 40 H 1.08001 * 120.05942 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1948 0.0000 4 6 3.5815 1.1962 -0.0062 5 6 4.3308 2.5036 -0.0131 6 8 4.5621 2.9131 -1.3625 7 6 4.2795 0.0018 -0.0057 8 6 3.5985 -1.1984 0.0001 9 6 2.2049 -1.2058 0.0059 10 6 1.4670 -2.4932 0.0128 11 6 1.7873 -3.4875 -0.9092 12 6 1.0981 -4.6833 -0.8981 13 6 0.0915 -4.8957 0.0264 14 6 -0.6571 -6.2036 0.0341 15 6 -1.8562 -6.1014 -0.8730 16 1 -2.0564 -5.1812 -1.4019 17 6 -2.6977 -7.1825 -1.0279 18 7 -2.4542 -8.3029 -0.3835 19 14 -4.1844 -7.0557 -2.1517 20 1 -3.7354 -6.7497 -3.5338 21 1 -4.9220 -8.3445 -2.1442 22 1 -5.0779 -5.9717 -1.6702 23 6 -0.2306 -3.9119 0.9440 24 6 0.4520 -2.7125 0.9418 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8924 -0.5096 28 1 1.6585 2.1300 -0.0004 29 1 3.7414 3.2629 0.5010 30 1 5.2858 2.3778 0.4972 31 1 5.0415 3.7490 -1.4432 32 1 5.3595 0.0086 -0.0102 33 1 4.1444 -2.1303 0.0001 34 1 2.5704 -3.3212 -1.6342 35 1 1.3458 -5.4549 -1.6120 36 1 -0.0015 -6.9995 -0.3187 37 1 -0.9871 -6.4274 1.0486 38 1 -3.0464 -9.0634 -0.4921 39 1 -1.0178 -4.0828 1.6634 40 1 0.2000 -1.9453 1.6589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244581132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:09 Heat of formation + Delta-G solvation = -22.606041 kcal Electronic energy + Delta-G solvation = -20494.707596 eV Core-core repulsion = 17431.076284 eV Total energy + Delta-G solvation = -3063.631313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95408 -38.35287 -36.84861 -33.90585 -32.89585 -32.14658 -30.41507 -30.26000 -27.49422 -27.03151 -25.36693 -23.13935 -22.39948 -21.55337 -20.70773 -19.85024 -17.72482 -16.76633 -16.31462 -15.89768 -15.40555 -14.98706 -14.53950 -14.26497 -14.15857 -14.10161 -13.54213 -13.36381 -13.05652 -12.80421 -12.57707 -12.31529 -12.15356 -11.93846 -11.70766 -11.36411 -11.27064 -11.03944 -10.83598 -10.72002 -10.49396 -10.36219 -10.23653 -9.59921 -9.47684 -8.87116 -8.65137 -8.43919 -8.31291 -7.56829 -6.05806 -4.10048 1.05324 1.40128 2.04072 2.12505 3.31245 3.35328 3.38616 3.60456 4.25105 4.35701 4.51899 4.68224 4.75955 4.88341 4.94464 5.09417 5.10480 5.28410 5.31613 5.46201 5.48442 5.53176 5.69355 5.74528 5.87480 5.95203 5.99397 6.12739 6.21912 6.24721 6.35382 6.50019 6.60318 6.64958 6.72892 6.96893 7.08507 7.15717 7.17362 7.30903 7.47872 7.68743 7.82429 7.89692 8.29453 8.94955 9.53874 11.03919 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.003106 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.820151 B = 9013.453434 C = 9301.126195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.099 4.099 4 C -0.103 4.103 5 C 0.120 3.880 6 O -0.567 6.567 7 C -0.105 4.105 8 C -0.112 4.112 9 C -0.018 4.018 10 C -0.090 4.090 11 C -0.104 4.104 12 C -0.125 4.125 13 C -0.025 4.025 14 C 0.046 3.954 15 C -0.512 4.512 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.126 4.126 24 C -0.102 4.102 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.377 0.623 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.120 0.880 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 19.851 2.545 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.117 4.117 4 C -0.103 4.103 5 C 0.043 3.957 6 O -0.373 6.373 7 C -0.123 4.123 8 C -0.130 4.130 9 C -0.018 4.018 10 C -0.090 4.090 11 C -0.122 4.122 12 C -0.143 4.143 13 C -0.025 4.025 14 C 0.009 3.991 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.144 4.144 24 C -0.120 4.120 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.224 0.776 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.198 19.106 2.454 22.800 hybrid contribution -0.509 0.498 -0.490 0.864 sum 11.689 19.604 1.964 22.909 Atomic orbital electron populations 1.20914 0.90865 1.03240 1.02368 1.19967 0.96267 0.91994 0.99648 1.20793 0.93215 0.97421 1.00293 1.19528 0.93634 0.93944 1.03238 1.20960 0.97904 0.93305 0.83573 1.86607 1.80101 1.44134 1.26455 1.20888 0.99498 0.91760 1.00120 1.21220 0.93353 0.97968 1.00422 1.18837 0.92718 0.92140 0.98141 1.18466 0.98609 0.92952 0.98969 1.21063 0.99724 0.93246 0.98154 1.21030 0.96882 0.96966 0.99469 1.20786 0.92423 0.97812 0.91439 1.18388 0.94403 0.88146 0.98164 1.21009 1.08682 0.98661 1.26713 0.92503 1.25011 0.98014 0.95281 0.95996 1.69948 1.38264 1.02857 1.42235 0.86590 0.82598 0.77260 0.81212 1.20137 1.21218 1.20145 1.21030 1.00030 0.93248 1.00124 1.21080 0.95560 0.97223 0.98174 0.91124 0.91973 0.90362 0.86205 0.92957 0.92929 0.77593 0.86222 0.85696 0.86968 0.86235 0.95264 0.95263 0.92757 0.86235 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 8.46 36.01 0.30 -1.15 16 2 C -0.08 -1.06 5.87 -104.29 -0.61 -1.67 16 3 C -0.10 -1.20 9.34 -39.63 -0.37 -1.57 16 4 C -0.10 -1.20 5.51 -104.56 -0.58 -1.78 16 5 C 0.12 1.03 7.16 36.00 0.26 1.29 16 6 O -0.57 -5.31 13.64 -35.23 -0.48 -5.79 16 7 C -0.10 -1.23 9.68 -39.63 -0.38 -1.62 16 8 C -0.11 -1.47 9.52 -39.25 -0.37 -1.84 16 9 C -0.02 -0.27 5.47 -104.90 -0.57 -0.84 16 10 C -0.09 -1.47 4.71 -104.90 -0.49 -1.97 16 11 C -0.10 -1.77 9.51 -39.25 -0.37 -2.15 16 12 C -0.13 -2.44 9.68 -39.63 -0.38 -2.83 16 13 C -0.02 -0.53 5.07 -104.56 -0.53 -1.06 16 14 C 0.05 1.17 5.10 -29.03 -0.15 1.02 16 15 C -0.51 -14.29 9.09 -34.44 -0.31 -14.60 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.13 -2.43 9.68 -39.63 -0.38 -2.82 16 24 C -0.10 -1.71 7.92 -39.26 -0.31 -2.02 16 25 H 0.07 0.79 7.51 -51.93 -0.39 0.40 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.08 1.11 6.47 -51.93 -0.34 0.78 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.38 1.54 9.12 45.56 0.42 1.95 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.13 1.50 8.04 -52.48 -0.42 1.08 16 34 H 0.11 1.68 8.04 -52.48 -0.42 1.26 16 35 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.11 1.64 6.88 -52.49 -0.36 1.28 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -31.68 339.81 -9.85 -41.54 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.85 Total: 2.28 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -5.36 Total: -34.04 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.48 Total: -5.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.68 -9.85 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244581132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.931 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds