Wall clock time and date at job start Tue Mar 31 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36271 * 119.94408 * 2 1 4 4 C 1.40904 * 119.87845 * 180.27629 * 3 2 1 5 5 C 1.41030 * 120.12005 * 179.74591 * 4 3 2 6 6 H 1.07998 * 120.00192 * 204.66075 * 5 4 3 7 7 C 1.40020 * 119.99634 * 24.65131 * 5 4 3 8 8 N 1.30794 * 120.00090 * 17.98019 * 7 5 4 9 9 Si 1.86798 * 119.99717 * 197.97010 * 7 5 4 10 10 H 1.48503 * 109.47357 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46809 * 120.00482 * 9 7 5 12 12 H 1.48504 * 109.47333 * 240.00136 * 9 7 5 13 13 C 1.40943 * 119.76813 * 359.71838 * 4 3 2 14 14 C 1.36243 * 119.87487 * 0.02562 * 13 4 3 15 15 C 1.39922 * 119.93513 * 179.72763 * 2 1 3 16 16 C 1.47986 * 119.88013 * 359.97438 * 15 2 1 17 17 C 1.39621 * 120.14282 * 244.73163 * 16 15 2 18 18 C 1.37916 * 119.85120 * 179.97438 * 17 16 15 19 19 C 1.38415 * 120.14358 * 0.27558 * 18 17 16 20 20 C 1.50703 * 119.85147 * 179.70358 * 19 18 17 21 21 O 1.42899 * 109.47109 * 90.00129 * 20 19 18 22 22 C 1.38362 * 120.29377 * 359.44664 * 19 18 17 23 23 C 1.37961 * 120.14355 * 0.55436 * 22 19 18 24 24 C 1.50695 * 120.07769 * 179.70231 * 23 22 19 25 25 H 1.09000 * 109.47315 * 270.28453 * 1 2 3 26 26 H 1.09006 * 109.47452 * 30.27734 * 1 2 3 27 27 H 1.09002 * 109.47417 * 150.27865 * 1 2 3 28 28 H 1.08006 * 120.05572 * 359.97438 * 3 2 1 29 29 H 0.96999 * 120.00060 * 179.97438 * 8 7 5 30 30 H 1.08007 * 120.06829 * 179.97438 * 13 4 3 31 31 H 1.08000 * 119.93837 * 179.97438 * 14 13 4 32 32 H 1.07991 * 120.07501 * 359.95842 * 17 16 15 33 33 H 1.08002 * 119.93280 * 179.97438 * 18 17 16 34 34 H 1.09009 * 109.47023 * 209.99931 * 20 19 18 35 35 H 1.09000 * 109.47528 * 329.99557 * 20 19 18 36 36 H 0.96701 * 113.99935 * 180.02562 * 21 20 19 37 37 H 1.07995 * 119.93235 * 180.29742 * 22 19 18 38 38 H 1.09003 * 109.47314 * 270.02597 * 24 23 22 39 39 H 1.09004 * 109.47111 * 30.02285 * 24 23 22 40 40 H 1.08994 * 109.47328 * 150.02141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1808 0.0000 4 6 3.5962 1.1792 -0.0059 5 6 4.3053 2.3983 -0.0113 6 1 5.3099 2.4369 -0.4059 7 6 3.7067 3.5585 0.4946 8 7 2.6631 3.4678 1.2779 9 14 4.3987 5.2360 0.0512 10 1 5.5723 5.0667 -0.8429 11 1 3.3570 6.0327 -0.6455 12 1 4.8166 5.9421 1.2889 13 6 4.2946 -0.0450 -0.0057 14 6 3.6047 -1.2199 -0.0004 15 6 2.2052 -1.2125 0.0058 16 6 1.4611 -2.4917 0.0124 17 6 1.5546 -3.3515 1.1086 18 6 0.8581 -4.5419 1.1086 19 6 0.0724 -4.8876 0.0228 20 6 -0.6805 -6.1930 0.0270 21 8 -1.9751 -5.9944 0.5983 22 6 -0.0290 -4.0375 -1.0641 23 6 0.6625 -2.8437 -1.0769 24 6 0.5562 -1.9221 -2.2644 25 1 -0.3634 0.0051 1.0276 26 1 -0.3634 0.8875 -0.5182 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6471 2.1162 -0.0004 29 1 2.2487 4.2716 1.6287 30 1 5.3746 -0.0519 -0.0107 31 1 4.1388 -2.1586 -0.0007 32 1 2.1710 -3.0851 1.9543 33 1 0.9298 -5.2081 1.9557 34 1 -0.7863 -6.5547 -0.9959 35 1 -0.1317 -6.9272 0.6169 36 1 -2.5165 -6.7949 0.6337 37 1 -0.6475 -4.3108 -1.9062 38 1 1.3334 -2.1700 -2.9875 39 1 -0.4229 -2.0393 -2.7289 40 1 0.6813 -0.8904 -1.9360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244581818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:14 Heat of formation + Delta-G solvation = -21.441670 kcal Electronic energy + Delta-G solvation = -21262.840662 eV Core-core repulsion = 18199.259840 eV Total energy + Delta-G solvation = -3063.580822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.51028 -37.71009 -36.49793 -34.11248 -32.75112 -31.48850 -31.23902 -29.20670 -26.78111 -26.40227 -25.71273 -24.06055 -21.89451 -20.87826 -20.09186 -19.26689 -17.48522 -17.12780 -16.04676 -15.53753 -15.23145 -14.88411 -14.21712 -13.87812 -13.80225 -13.51436 -13.22977 -12.95421 -12.67811 -12.56473 -12.44353 -11.81232 -11.70962 -11.53349 -11.44874 -11.20684 -11.13651 -11.02832 -10.82738 -10.56381 -10.39688 -10.30971 -10.11099 -9.59158 -9.46073 -9.15833 -8.37705 -8.12930 -7.39080 -7.19827 -6.82179 -4.39430 1.63366 1.83142 2.69141 3.03305 3.06576 3.08797 3.14438 3.87590 4.01289 4.51794 4.58615 5.00103 5.07531 5.31018 5.39705 5.42921 5.56638 5.61639 5.76630 5.92901 6.02900 6.09969 6.14638 6.15687 6.34406 6.38637 6.46569 6.50026 6.63425 6.76759 6.84784 6.89121 6.93313 7.00699 7.17691 7.29237 7.33885 7.43077 7.54431 7.60458 7.89061 8.01491 8.10798 8.24975 8.57637 8.82556 8.93283 10.09517 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.003756 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.396893 B = 7452.716819 C = 7609.594252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.047 4.047 3 C -0.167 4.167 4 C 0.118 3.882 5 C -0.456 4.456 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.784 5.784 9 Si 0.907 3.093 10 H -0.260 1.260 11 H -0.271 1.271 12 H -0.274 1.274 13 C -0.232 4.232 14 C -0.065 4.065 15 C -0.200 4.200 16 C 0.024 3.976 17 C -0.123 4.123 18 C -0.105 4.105 19 C -0.120 4.120 20 C 0.123 3.877 21 O -0.568 6.568 22 C -0.101 4.101 23 C -0.089 4.089 24 C -0.122 4.122 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.281 0.719 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.374 0.626 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -11.613 -2.876 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.186 4.186 4 C 0.115 3.885 5 C -0.485 4.485 6 H 0.097 0.903 7 C -0.143 4.143 8 N -0.409 5.409 9 Si 0.731 3.269 10 H -0.183 1.183 11 H -0.196 1.196 12 H -0.199 1.199 13 C -0.251 4.251 14 C -0.084 4.084 15 C -0.201 4.201 16 C 0.024 3.976 17 C -0.141 4.141 18 C -0.123 4.123 19 C -0.120 4.120 20 C 0.046 3.954 21 O -0.373 6.373 22 C -0.119 4.119 23 C -0.089 4.089 24 C -0.178 4.178 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.220 0.780 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.552 -10.840 -2.683 12.471 hybrid contribution 0.162 0.156 -0.004 0.225 sum -5.390 -10.685 -2.687 12.265 Atomic orbital electron populations 1.20992 0.93943 1.01401 1.01113 1.19151 0.93621 0.92664 0.99312 1.20860 0.94266 0.96082 1.07378 1.17651 0.92004 0.92066 0.86731 1.19640 1.01350 0.92432 1.35096 0.90271 1.25968 0.94193 1.01580 0.92580 1.69829 1.18141 1.31467 1.21415 0.86276 0.80107 0.81097 0.79380 1.18311 1.19611 1.19926 1.20643 0.97674 0.92538 1.14288 1.20234 0.92520 0.96414 0.99192 1.17830 0.92240 0.89885 1.20145 1.18917 0.93451 0.93493 0.91697 1.21344 1.00293 0.94121 0.98376 1.20835 0.97447 0.96935 0.97063 1.19416 1.00137 0.96620 0.95801 1.20938 0.83331 0.94393 0.96731 1.86632 1.27459 1.38198 1.84994 1.20720 0.99441 0.93884 0.97891 1.20034 0.97726 0.95007 0.96134 1.21032 1.00720 1.00823 0.95252 0.92838 0.92899 0.91635 0.86368 0.90755 0.88998 0.89482 0.86186 0.86889 0.93302 0.93275 0.78008 0.86875 0.91854 0.92705 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.59 36.00 0.31 -2.03 16 2 C -0.05 -1.08 4.72 -104.70 -0.49 -1.57 16 3 C -0.17 -4.23 8.26 -39.28 -0.32 -4.56 16 4 C 0.12 3.09 5.57 -106.81 -0.60 2.49 16 5 C -0.46 -11.86 9.03 -37.86 -0.34 -12.20 16 6 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 7 C 0.08 1.86 5.13 -17.33 -0.09 1.77 16 8 N -0.78 -19.87 10.96 55.55 0.61 -19.26 16 9 Si 0.91 18.25 29.60 -169.99 -5.03 13.21 16 10 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 13 C -0.23 -5.63 9.73 -39.28 -0.38 -6.01 16 14 C -0.07 -1.47 9.66 -39.66 -0.38 -1.85 16 15 C -0.20 -4.39 4.66 -104.63 -0.49 -4.87 16 16 C 0.02 0.47 4.62 -104.88 -0.48 -0.01 16 17 C -0.12 -2.20 9.74 -39.18 -0.38 -2.58 16 18 C -0.10 -1.64 9.68 -39.63 -0.38 -2.02 16 19 C -0.12 -1.80 5.52 -104.51 -0.58 -2.38 16 20 C 0.12 1.41 7.16 36.01 0.26 1.67 16 21 O -0.57 -6.76 13.64 -35.23 -0.48 -7.24 16 22 C -0.10 -1.58 9.34 -39.64 -0.37 -1.95 16 23 C -0.09 -1.55 4.75 -104.22 -0.50 -2.05 16 24 C -0.12 -1.98 8.61 36.00 0.31 -1.67 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.06 1.21 4.22 -51.93 -0.22 0.99 16 28 H 0.12 3.11 6.16 -52.48 -0.32 2.79 16 29 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 30 H 0.09 2.11 8.06 -52.48 -0.42 1.68 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.05 0.47 8.09 -51.92 -0.42 0.05 16 35 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.37 2.37 9.12 45.56 0.42 2.78 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.09 1.64 4.26 -51.93 -0.22 1.42 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -28.77 329.18 -9.39 -38.16 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.54 Total: 10.00 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: -4.91 Total: -39.83 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.61 Total: -19.26 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.48 Total: -7.24 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.77 -9.39 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244581818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.720 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds