Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35841 * 117.00109 * 2 1 4 4 C 1.38592 * 120.11505 * 0.21217 * 3 2 1 5 5 C 1.38181 * 120.05738 * 180.27969 * 4 3 2 6 6 C 1.50702 * 119.85037 * 179.76879 * 5 4 3 7 7 C 1.38387 * 120.30418 * 359.48467 * 5 4 3 8 8 C 1.50699 * 119.88595 * 180.25934 * 7 5 4 9 9 C 1.38013 * 120.23800 * 0.27940 * 7 5 4 10 10 C 1.39292 * 119.93018 * 359.97438 * 9 7 5 11 11 C 1.48344 * 120.15189 * 180.02562 * 10 9 7 12 12 C 1.39757 * 120.00830 * 129.99399 * 11 10 9 13 13 C 1.38377 * 120.37863 * 179.97438 * 12 11 10 14 14 C 1.37726 * 120.38133 * 0.02649 * 13 12 11 15 15 C 1.40755 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.41425 * 120.19072 * 179.97438 * 15 14 13 17 17 H 1.07989 * 120.00487 * 150.20328 * 16 15 14 18 18 C 1.39935 * 119.99547 * 330.20874 * 16 15 14 19 19 N 1.30827 * 119.99614 * 161.72392 * 18 16 15 20 20 Si 1.86799 * 119.99987 * 341.71392 * 18 16 15 21 21 H 1.48499 * 109.46952 * 95.41671 * 20 18 16 22 22 H 1.48496 * 109.47258 * 215.41406 * 20 18 16 23 23 H 1.48495 * 109.47455 * 335.41988 * 20 18 16 24 24 C 1.38759 * 120.00000 * 309.72281 * 11 10 9 25 25 H 1.08993 * 109.47470 * 59.99733 * 1 2 3 26 26 H 1.08995 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47033 * 299.99821 * 1 2 3 28 28 H 1.07997 * 119.97641 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.46576 * 269.72410 * 6 5 4 30 30 H 1.08994 * 109.47593 * 149.72245 * 6 5 4 31 31 H 1.09001 * 109.47040 * 29.71611 * 6 5 4 32 32 H 1.08999 * 109.47030 * 89.99659 * 8 7 5 33 33 H 1.09000 * 109.47322 * 210.00592 * 8 7 5 34 34 H 1.09004 * 109.46708 * 330.00469 * 8 7 5 35 35 H 1.07996 * 120.03548 * 179.97438 * 9 7 5 36 36 H 1.07996 * 119.80954 * 359.97438 * 12 11 10 37 37 H 1.07993 * 119.81041 * 180.02562 * 13 12 11 38 38 H 1.08003 * 120.00558 * 180.02562 * 14 13 12 39 39 H 0.97006 * 119.99197 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.18805 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2933 2.3742 0.0044 5 6 1.9219 3.6048 -0.0014 6 6 1.0990 4.8673 -0.0018 7 6 3.3035 3.6831 -0.0010 8 6 3.9792 5.0302 -0.0014 9 6 4.0649 2.5321 -0.0005 10 6 3.4416 1.2864 0.0001 11 6 4.2552 0.0460 0.0012 12 6 3.9879 -0.9645 0.9289 13 6 4.7417 -2.1249 0.9364 14 6 5.7644 -2.2970 0.0301 15 6 6.0474 -1.2896 -0.9112 16 6 7.0970 -1.4619 -1.8434 17 1 7.0388 -0.9938 -2.8148 18 6 8.2109 -2.2391 -1.5069 19 7 8.9969 -2.6973 -2.4471 20 14 8.5758 -2.6223 0.2846 21 1 8.0010 -3.9460 0.6346 22 1 10.0454 -2.6493 0.4957 23 1 7.9708 -1.5762 1.1477 24 6 5.2783 -0.1135 -0.9226 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.2147 2.3194 0.0083 29 1 0.9010 5.1715 -1.0296 30 1 1.6461 5.6577 0.5120 31 1 0.1549 4.6858 0.5117 32 1 4.1417 5.3555 1.0261 33 1 4.9377 4.9557 -0.5150 34 1 3.3467 5.7537 -0.5159 35 1 5.1430 2.5970 -0.0006 36 1 3.1884 -0.8389 1.6440 37 1 4.5269 -2.8999 1.6571 38 1 6.3486 -3.2053 0.0412 39 1 9.7693 -3.2357 -2.2137 40 1 5.4850 0.6637 -1.6436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245020463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = -10.017976 kcal Electronic energy + Delta-G solvation = -21329.299579 eV Core-core repulsion = 18266.214126 eV Total energy + Delta-G solvation = -3063.085453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11389 -37.74462 -37.49477 -33.91169 -32.86443 -31.64073 -30.30211 -29.58926 -27.77662 -26.88404 -25.33728 -24.87544 -22.17811 -21.38495 -20.41055 -19.83743 -17.65216 -16.88459 -16.12271 -15.77623 -15.52261 -14.81040 -14.50159 -14.07352 -14.01127 -13.87984 -13.67245 -13.35132 -12.80803 -12.69337 -12.48834 -12.40036 -12.03562 -11.97352 -11.77499 -11.70177 -11.46998 -11.17410 -10.98825 -10.60727 -10.55655 -10.50924 -10.18387 -9.73510 -9.53644 -9.11247 -8.57420 -7.91816 -7.58857 -7.15550 -6.87155 -4.41053 1.44536 1.66784 2.70012 2.72689 3.16523 3.26750 3.37572 3.54745 3.95860 4.05049 4.57652 4.82618 4.98820 5.07440 5.15728 5.21906 5.26792 5.33855 5.50628 5.52566 5.53915 5.63523 5.69616 5.77920 5.83612 5.92656 6.03871 6.11202 6.30326 6.38562 6.50976 6.55431 6.63561 6.80640 6.86213 7.00729 7.08794 7.23239 7.47511 7.68319 7.69995 7.85212 7.94152 8.16946 8.42958 8.72421 8.88214 10.15947 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.004771 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.251075 B = 5866.937849 C = 6657.466616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.131 3.869 4 C -0.209 4.209 5 C -0.064 4.064 6 C -0.112 4.112 7 C -0.126 4.126 8 C -0.108 4.108 9 C -0.071 4.071 10 C -0.052 4.052 11 C -0.019 4.019 12 C -0.205 4.205 13 C -0.084 4.084 14 C -0.233 4.233 15 C 0.091 3.909 16 C -0.452 4.452 17 H 0.089 0.911 18 C 0.085 3.915 19 N -0.814 5.814 20 Si 0.910 3.090 21 H -0.271 1.271 22 H -0.292 1.292 23 H -0.245 1.245 24 C -0.187 4.187 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.123 0.877 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.283 0.717 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 10.793 5.770 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.210 6.210 3 C 0.086 3.914 4 C -0.228 4.228 5 C -0.064 4.064 6 C -0.168 4.168 7 C -0.126 4.126 8 C -0.164 4.164 9 C -0.089 4.089 10 C -0.052 4.052 11 C -0.019 4.019 12 C -0.224 4.224 13 C -0.102 4.102 14 C -0.252 4.252 15 C 0.088 3.912 16 C -0.481 4.481 17 H 0.107 0.893 18 C -0.133 4.133 19 N -0.439 5.439 20 Si 0.737 3.263 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.168 1.168 24 C -0.206 4.206 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.869 10.479 5.625 17.523 hybrid contribution -0.025 -0.314 0.624 0.699 sum -12.893 10.165 6.249 17.567 Atomic orbital electron populations 1.23003 0.79633 1.03558 1.00669 1.86259 1.20081 1.26406 1.88302 1.19013 0.91594 0.84059 0.96735 1.20914 0.99322 0.91743 1.10791 1.19430 0.93204 0.94245 0.99519 1.20784 0.98958 0.95057 1.02020 1.19544 0.92782 0.95373 1.04924 1.20720 1.00292 0.93614 1.01806 1.21018 0.99930 0.90064 0.97852 1.18443 0.89467 0.94128 1.03176 1.18222 0.94967 0.91822 0.96888 1.20333 1.03502 0.95478 1.03098 1.20518 0.95840 0.96248 0.97624 1.21075 1.02000 0.99675 1.02434 1.17635 0.92471 0.90023 0.91054 1.19433 1.01131 1.26143 1.01412 0.89300 1.26103 0.95464 0.91837 0.99850 1.69709 1.13430 1.25466 1.35275 0.86339 0.76229 0.80527 0.83245 1.19764 1.21990 1.16772 1.21075 0.99861 0.98026 1.01680 0.93125 0.88545 0.93194 0.85924 0.91382 0.91358 0.92018 0.91738 0.91633 0.91836 0.85115 0.88797 0.88846 0.88335 0.90635 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.30 -5.08 8.83 -19.24 -0.17 -5.25 16 3 C 0.13 2.28 6.59 -38.87 -0.26 2.02 16 4 C -0.21 -2.99 8.68 -39.47 -0.34 -3.33 16 5 C -0.06 -0.86 5.88 -104.59 -0.62 -1.47 16 6 C -0.11 -1.07 9.18 36.01 0.33 -0.74 16 7 C -0.13 -1.80 5.88 -104.65 -0.61 -2.42 16 8 C -0.11 -1.18 9.18 36.01 0.33 -0.85 16 9 C -0.07 -1.20 9.15 -39.27 -0.36 -1.56 16 10 C -0.05 -0.99 5.48 -104.77 -0.57 -1.57 16 11 C -0.02 -0.42 5.27 -104.98 -0.55 -0.97 16 12 C -0.20 -4.55 8.78 -38.96 -0.34 -4.89 16 13 C -0.08 -1.91 10.01 -39.72 -0.40 -2.31 16 14 C -0.23 -5.82 7.17 -38.82 -0.28 -6.09 16 15 C 0.09 2.38 5.10 -106.87 -0.55 1.84 16 16 C -0.45 -12.57 9.57 -37.73 -0.36 -12.93 16 17 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 18 C 0.09 2.29 5.40 -17.34 -0.09 2.20 16 19 N -0.81 -22.22 13.93 55.55 0.77 -21.45 16 20 Si 0.91 21.35 24.52 -169.99 -4.17 17.19 16 21 H -0.27 -6.20 6.71 56.52 0.38 -5.82 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.24 -5.88 6.86 56.52 0.39 -5.49 16 24 C -0.19 -4.54 9.25 -38.52 -0.36 -4.89 16 25 H 0.05 0.51 7.67 -51.93 -0.40 0.12 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.49 7.65 -51.92 -0.40 0.09 16 28 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.58 6.68 -51.93 -0.35 0.23 16 31 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.06 0.59 6.68 -51.93 -0.35 0.24 16 35 H 0.13 2.17 8.04 -52.49 -0.42 1.75 16 36 H 0.09 1.94 7.67 -52.49 -0.40 1.53 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.10 2.45 4.73 -52.48 -0.25 2.20 16 39 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 40 H 0.10 2.34 8.04 -52.48 -0.42 1.92 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -29.91 326.78 -8.11 -38.02 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.44 Total: 3.24 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: -4.04 Total: -36.67 kcal Atomic # 7 Polarization: -22.22 SS G_CDS: 0.77 Total: -21.45 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.17 Total: -5.25 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.17 Total: 17.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.91 -8.11 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245020463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.005 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds