Wall clock time and date at job start Tue Mar 31 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35784 * 116.99621 * 2 1 4 4 C 1.38550 * 120.14349 * 359.97438 * 3 2 1 5 5 C 1.38196 * 120.09268 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.81604 * 179.97438 * 5 4 3 7 7 C 1.38519 * 120.37370 * 0.25970 * 5 4 3 8 8 C 1.50696 * 119.85842 * 179.74365 * 7 5 4 9 9 C 1.37859 * 120.27883 * 359.48211 * 7 5 4 10 10 C 1.39655 * 119.90458 * 0.51353 * 9 7 5 11 11 C 1.47746 * 120.18502 * 179.72178 * 10 9 7 12 12 C 1.39247 * 120.34088 * 64.74999 * 11 10 9 13 13 C 1.38033 * 119.97342 * 179.69843 * 12 11 10 14 14 C 1.38957 * 120.68414 * 0.60145 * 13 12 11 15 15 C 1.36411 * 120.70323 * 359.67479 * 14 13 12 16 16 C 1.40760 * 119.99071 * 0.02562 * 15 14 13 17 17 C 1.40840 * 120.33218 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99428 * 149.99017 * 17 16 15 19 19 C 1.40050 * 120.00724 * 329.98967 * 17 16 15 20 20 N 1.30782 * 120.00211 * 161.76616 * 19 17 16 21 21 Si 1.86801 * 119.99583 * 341.76629 * 19 17 16 22 22 H 1.48505 * 109.46786 * 95.39693 * 21 19 17 23 23 H 1.48497 * 109.46994 * 215.39426 * 21 19 17 24 24 H 1.48497 * 109.47407 * 335.39878 * 21 19 17 25 25 H 1.09001 * 109.47365 * 59.99961 * 1 2 3 26 26 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47490 * 300.00048 * 1 2 3 28 28 H 1.08003 * 119.95387 * 0.04539 * 4 3 2 29 29 H 1.08993 * 109.46841 * 89.99940 * 6 5 4 30 30 H 1.08999 * 109.46698 * 329.99947 * 6 5 4 31 31 H 1.08997 * 109.47237 * 210.00108 * 6 5 4 32 32 H 1.09004 * 109.47374 * 89.99835 * 8 7 5 33 33 H 1.09002 * 109.47104 * 209.99877 * 8 7 5 34 34 H 1.09002 * 109.47310 * 329.99842 * 8 7 5 35 35 H 1.08002 * 120.04762 * 180.28179 * 9 7 5 36 36 H 1.08001 * 120.01107 * 359.97438 * 12 11 10 37 37 H 1.07995 * 119.65612 * 180.32003 * 13 12 11 38 38 H 1.07997 * 119.64969 * 179.69304 * 14 13 12 39 39 H 1.07998 * 120.00645 * 179.97438 * 15 14 13 40 40 H 0.97004 * 120.00101 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2099 0.0000 4 6 1.2936 2.3737 -0.0005 5 6 1.9220 3.6045 -0.0011 6 6 1.0982 4.8664 -0.0022 7 6 3.3048 3.6849 -0.0065 8 6 3.9779 5.0332 -0.0129 9 6 4.0679 2.5367 -0.0006 10 6 3.4450 1.2868 -0.0001 11 6 4.2567 0.0523 0.0000 12 6 5.0719 -0.2535 1.0867 13 6 5.8224 -1.4120 1.0814 14 6 5.7845 -2.2764 -0.0058 15 6 5.0000 -2.0014 -1.0874 16 6 4.2181 -0.8311 -1.1100 17 6 3.4051 -0.5403 -2.2227 18 1 2.4915 0.0207 -2.0920 19 6 3.7814 -0.9785 -3.4986 20 7 2.8950 -1.0343 -4.4587 21 14 5.5493 -1.4832 -3.8291 22 1 5.6795 -2.9552 -3.6820 23 1 5.9268 -1.0884 -5.2100 24 1 6.4468 -0.8074 -2.8581 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2149 2.3189 -0.0002 29 1 0.8992 5.1713 1.0251 30 1 0.1546 4.6838 -0.5164 31 1 1.6450 5.6568 -0.5163 32 1 4.1441 5.3612 1.0133 33 1 4.9346 4.9592 -0.5301 34 1 3.3421 5.7543 -0.5264 35 1 5.1458 2.6038 -0.0003 36 1 5.1136 0.4134 1.9352 37 1 6.4489 -1.6466 1.9292 38 1 6.3823 -3.1758 0.0056 39 1 4.9795 -2.6809 -1.9265 40 1 3.1555 -1.3381 -5.3423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245024073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:49 Heat of formation + Delta-G solvation = -4.559809 kcal Electronic energy + Delta-G solvation = -22109.357951 eV Core-core repulsion = 19046.509182 eV Total energy + Delta-G solvation = -3062.848769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.73845 -37.57363 -37.22750 -33.55647 -32.93478 -31.32249 -30.34683 -29.48094 -27.36061 -26.74374 -25.31978 -24.48055 -21.92070 -20.94647 -20.84231 -19.28333 -17.35899 -16.95519 -16.02048 -15.57928 -15.15648 -14.78642 -14.01305 -13.91699 -13.74077 -13.58948 -13.52586 -13.47696 -12.68478 -12.56214 -12.33988 -12.23109 -11.85919 -11.70134 -11.55793 -11.45173 -11.30476 -10.84202 -10.80488 -10.75381 -10.34048 -10.17473 -10.09867 -9.73643 -9.43128 -9.10969 -8.17103 -7.64018 -7.54379 -7.04804 -6.89941 -4.37989 1.87265 2.05994 2.66737 2.78792 3.14638 3.24808 3.35983 3.97277 4.03373 4.32117 4.57628 5.16451 5.27559 5.37576 5.44362 5.50858 5.52976 5.62664 5.71741 5.72110 5.91265 5.91434 5.98849 6.03661 6.08212 6.13545 6.20248 6.21528 6.31772 6.49323 6.65419 6.77511 6.90719 6.98062 7.03322 7.19764 7.26885 7.44694 7.48350 7.73829 7.81666 7.97315 8.17576 8.21183 8.46905 8.77840 8.88037 10.11128 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.006830 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.508488 B = 4098.372663 C = 4367.915570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.288 6.288 3 C 0.139 3.861 4 C -0.210 4.210 5 C -0.071 4.071 6 C -0.110 4.110 7 C -0.131 4.131 8 C -0.106 4.106 9 C -0.080 4.080 10 C -0.013 4.013 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.250 4.250 14 C -0.076 4.076 15 C -0.234 4.234 16 C 0.115 3.885 17 C -0.427 4.427 18 H 0.099 0.901 19 C 0.084 3.916 20 N -0.805 5.805 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.244 1.244 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 7.413 6.279 9.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.201 6.201 3 C 0.093 3.907 4 C -0.229 4.229 5 C -0.072 4.072 6 C -0.167 4.167 7 C -0.131 4.131 8 C -0.162 4.162 9 C -0.098 4.098 10 C -0.014 4.014 11 C -0.158 4.158 12 C -0.080 4.080 13 C -0.270 4.270 14 C -0.094 4.094 15 C -0.253 4.253 16 C 0.112 3.888 17 C -0.455 4.455 18 H 0.116 0.884 19 C -0.135 4.135 20 N -0.429 5.429 21 Si 0.734 3.266 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.167 1.167 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.137 0.863 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.153 7.194 5.996 9.609 hybrid contribution 0.347 -0.330 -0.418 0.636 sum -1.806 6.864 5.578 9.027 Atomic orbital electron populations 1.22934 0.80151 1.03258 1.00231 1.86279 1.19597 1.26320 1.87857 1.19154 0.91858 0.83894 0.95783 1.20874 0.99127 0.91914 1.11013 1.19330 0.93118 0.94042 1.00664 1.20782 0.99005 0.95322 1.01574 1.19412 0.92797 0.95075 1.05815 1.20713 1.00079 0.94056 1.01360 1.20916 0.99182 0.90274 0.99417 1.18052 0.89130 0.93389 1.00812 1.18375 1.03998 0.95319 0.98118 1.20636 0.95554 0.95943 0.95885 1.20217 1.08102 0.98829 0.99811 1.20359 0.97399 0.97512 0.94168 1.20730 1.05777 0.99369 0.99417 1.17594 0.89624 0.89197 0.92408 1.19512 1.07051 1.29054 0.89920 0.88353 1.26223 0.99663 0.91533 0.96118 1.69684 1.35629 1.34031 1.03590 0.86381 0.83369 0.79579 0.77254 1.19719 1.21947 1.16678 0.93133 0.88870 0.93765 0.86343 0.91809 0.92235 0.91443 0.92133 0.92099 0.91880 0.86011 0.88903 0.89043 0.89182 0.88363 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.29 -6.21 8.57 -19.06 -0.16 -6.37 16 3 C 0.14 2.94 5.46 -38.74 -0.21 2.72 16 4 C -0.21 -3.79 8.67 -39.48 -0.34 -4.13 16 5 C -0.07 -1.18 5.89 -104.53 -0.62 -1.79 16 6 C -0.11 -1.37 9.60 36.01 0.35 -1.02 16 7 C -0.13 -2.21 5.88 -104.66 -0.61 -2.83 16 8 C -0.11 -1.37 9.59 36.00 0.35 -1.03 16 9 C -0.08 -1.55 9.39 -39.19 -0.37 -1.92 16 10 C -0.01 -0.29 4.69 -104.75 -0.49 -0.78 16 11 C -0.16 -3.77 4.99 -104.23 -0.52 -4.29 16 12 C -0.06 -1.37 9.73 -39.28 -0.38 -1.75 16 13 C -0.25 -5.40 10.03 -39.39 -0.40 -5.79 16 14 C -0.08 -1.71 9.96 -39.97 -0.40 -2.11 16 15 C -0.23 -5.82 7.12 -39.29 -0.28 -6.10 16 16 C 0.11 2.99 4.94 -106.55 -0.53 2.47 16 17 C -0.43 -11.72 8.56 -37.92 -0.32 -12.05 16 18 H 0.10 2.85 5.67 -52.48 -0.30 2.55 16 19 C 0.08 2.23 5.40 -17.32 -0.09 2.13 16 20 N -0.81 -21.69 13.93 55.55 0.77 -20.91 16 21 Si 0.91 21.25 24.53 -169.99 -4.17 17.08 16 22 H -0.27 -6.16 6.71 56.52 0.38 -5.78 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.24 -5.86 6.87 56.52 0.39 -5.47 16 25 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 28 H 0.12 1.84 6.30 -52.48 -0.33 1.51 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.07 0.75 5.91 -51.93 -0.31 0.45 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.06 0.72 5.92 -51.93 -0.31 0.42 16 35 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.10 2.43 4.75 -52.49 -0.25 2.18 16 40 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -29.55 322.40 -7.84 -37.39 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.26 Total: 4.75 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -3.88 Total: -36.79 kcal Atomic # 7 Polarization: -21.69 SS G_CDS: 0.77 Total: -20.91 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.16 Total: -6.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.17 Total: 17.08 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.55 -7.84 -37.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245024073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.825 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds