Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35850 * 116.99812 * 2 1 4 4 C 1.38578 * 120.11714 * 90.00821 * 3 2 1 5 5 C 1.50703 * 119.96922 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.06460 * 180.02562 * 4 3 2 7 7 C 1.38387 * 120.30057 * 0.23591 * 6 4 3 8 8 C 1.38004 * 120.23978 * 359.47895 * 7 6 4 9 9 C 1.39308 * 119.92986 * 0.54013 * 8 7 6 10 10 C 1.48332 * 120.14913 * 179.69732 * 9 8 7 11 11 C 1.39363 * 120.11953 * 129.74129 * 10 9 8 12 12 C 1.38019 * 119.86991 * 179.74444 * 11 10 9 13 13 C 1.38328 * 120.12317 * 0.56172 * 12 11 10 14 14 C 1.50693 * 119.87149 * 179.72076 * 13 12 11 15 15 C 1.50703 * 109.47014 * 269.97279 * 14 13 12 16 16 H 1.07997 * 120.00182 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00133 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00123 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99791 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47502 * 90.00270 * 19 17 15 21 21 H 1.48505 * 109.47056 * 210.00217 * 19 17 15 22 22 H 1.48509 * 109.47396 * 330.00132 * 19 17 15 23 23 C 1.38323 * 120.24996 * 359.69035 * 13 12 11 24 24 C 1.38018 * 120.12517 * 0.03110 * 23 13 12 25 25 H 1.08995 * 109.47462 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46913 * 299.99612 * 1 2 3 27 27 H 1.09000 * 109.47546 * 59.99324 * 1 2 3 28 28 H 1.09004 * 109.47045 * 270.02461 * 5 4 3 29 29 H 1.09001 * 109.47060 * 30.01956 * 5 4 3 30 30 H 1.08999 * 109.47474 * 150.02465 * 5 4 3 31 31 H 1.08002 * 119.84662 * 179.97438 * 6 4 3 32 32 H 1.08007 * 119.87776 * 179.74892 * 7 6 4 33 33 H 1.07997 * 120.03945 * 180.23703 * 8 7 6 34 34 H 1.07997 * 120.06303 * 0.02659 * 11 10 9 35 35 H 1.08001 * 119.93617 * 180.27770 * 12 11 10 36 36 H 1.08996 * 109.47698 * 29.97778 * 14 13 12 37 37 H 1.09005 * 109.47319 * 149.97671 * 14 13 12 38 38 H 0.96998 * 119.99736 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.93811 * 180.02562 * 23 13 12 40 40 H 1.07997 * 120.06180 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 2.3615 1.8299 1.1987 5 6 2.0210 1.1599 2.5050 6 6 2.9883 3.0614 1.1974 7 6 3.2997 3.6851 0.0020 8 6 2.9962 3.0768 -1.1990 9 6 2.3639 1.8355 -1.2092 10 6 2.0294 1.1804 -2.4973 11 6 2.3941 -0.1456 -2.7229 12 6 2.0756 -0.7517 -3.9213 13 6 1.4060 -0.0420 -4.9018 14 6 1.0667 -0.7075 -6.2106 15 6 2.1963 -0.5016 -7.1866 16 1 3.0725 0.0552 -6.8888 17 6 2.1112 -1.0239 -8.4598 18 7 3.0972 -0.8446 -9.3114 19 14 0.5960 -1.9874 -8.9747 20 1 -0.4068 -1.0595 -9.5565 21 1 0.9766 -3.0038 -9.9883 22 1 0.0137 -2.6652 -7.7885 23 6 1.0463 1.2759 -4.6853 24 6 1.3545 1.8905 -3.4885 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.0228 1.4643 2.8201 29 1 2.0471 0.0779 2.3760 30 1 2.7466 1.4530 3.2637 31 1 3.2324 3.5412 2.1337 32 1 3.7860 4.6495 0.0090 33 1 3.2442 3.5647 -2.1300 34 1 2.9208 -0.6992 -1.9597 35 1 2.3537 -1.7807 -4.0955 36 1 0.9174 -1.7748 -6.0476 37 1 0.1534 -0.2705 -6.6144 38 1 3.0374 -1.2124 -10.2069 39 1 0.5233 1.8252 -5.4542 40 1 1.0728 2.9194 -3.3204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245362020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = -1.686166 kcal Electronic energy + Delta-G solvation = -21052.492914 eV Core-core repulsion = 17989.768755 eV Total energy + Delta-G solvation = -3062.724159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32359 -38.40964 -37.21689 -34.01908 -32.74882 -31.58825 -30.36265 -30.00204 -27.78934 -26.88498 -26.29825 -23.48383 -22.26265 -21.65482 -21.12233 -19.85317 -17.71193 -16.78079 -16.40225 -16.18995 -15.64771 -14.96441 -14.64397 -14.48147 -14.08948 -13.85628 -13.67016 -13.55279 -12.97202 -12.82914 -12.69097 -12.40720 -12.29336 -12.04456 -11.91602 -11.65953 -11.54242 -11.23128 -11.14634 -10.70336 -10.31389 -10.07232 -10.01792 -9.82911 -9.39601 -8.88094 -8.61691 -8.59483 -8.33050 -7.59644 -6.08327 -4.07594 1.02365 1.18764 2.02769 2.10687 3.27602 3.35547 3.38255 3.40677 3.93511 4.40436 4.41363 4.66482 4.73226 4.93577 5.13631 5.19483 5.23384 5.29531 5.38458 5.40893 5.44695 5.46888 5.51029 5.58772 5.64212 5.74004 5.87161 6.00433 6.11749 6.17321 6.29278 6.35557 6.48048 6.57618 6.61954 6.71536 6.94287 7.00601 7.06098 7.09411 7.53017 7.58550 7.59218 7.70851 8.48532 8.97135 9.51712 11.04643 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031371 B = 0.003665 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.336623 B = 7638.417301 C = 8129.034520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.328 6.328 3 C 0.098 3.902 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.105 4.105 9 C -0.039 4.039 10 C -0.087 4.087 11 C -0.084 4.084 12 C -0.126 4.126 13 C -0.020 4.020 14 C 0.012 3.988 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.126 4.126 24 C -0.105 4.105 25 H 0.092 0.908 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 6.240 22.242 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.245 6.245 3 C 0.054 3.946 4 C -0.106 4.106 5 C -0.167 4.167 6 C -0.136 4.136 7 C -0.138 4.138 8 C -0.123 4.123 9 C -0.039 4.039 10 C -0.087 4.087 11 C -0.102 4.102 12 C -0.144 4.144 13 C -0.020 4.020 14 C -0.025 4.025 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.144 4.144 24 C -0.123 4.123 25 H 0.110 0.890 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.317 6.012 22.055 23.264 hybrid contribution -0.742 -0.235 -0.542 0.948 sum -5.059 5.776 21.514 22.843 Atomic orbital electron populations 1.22925 0.79099 1.03073 1.00432 1.85976 1.19673 1.24616 1.94194 1.18524 0.98327 0.86658 0.91064 1.20106 1.00584 0.95031 0.94860 1.20683 1.01357 1.01213 0.93431 1.20910 0.99918 0.94554 0.98208 1.21082 1.00465 1.00077 0.92210 1.21211 0.98348 0.94285 0.98466 1.19223 0.98581 0.93863 0.92261 1.18395 1.03193 0.94448 0.92668 1.21075 0.98907 0.93414 0.96844 1.21016 0.99823 1.00401 0.93120 1.20368 0.92636 0.93548 0.95436 1.18843 0.97639 0.95718 0.90274 1.20923 1.03261 1.35329 0.95571 0.90804 1.25001 0.96167 0.95744 0.96345 1.69898 1.31922 1.45803 1.06176 0.86803 0.83583 0.80375 0.78734 1.20169 1.21229 1.18923 1.20964 1.01892 0.95081 0.96476 1.21033 0.99210 0.98760 0.93340 0.88969 0.94067 0.93315 0.91618 0.90861 0.91576 0.85932 0.85799 0.85384 0.86549 0.86196 0.95358 0.95838 0.92584 0.86217 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.13 101.05 1.12 1.55 16 2 O -0.33 -4.46 7.83 -19.27 -0.15 -4.61 16 3 C 0.10 1.34 5.61 -38.87 -0.22 1.12 16 4 C -0.11 -1.21 5.89 -104.52 -0.62 -1.83 16 5 C -0.11 -0.98 9.79 36.01 0.35 -0.63 16 6 C -0.12 -1.21 9.69 -39.55 -0.38 -1.60 16 7 C -0.12 -1.28 10.03 -39.61 -0.40 -1.68 16 8 C -0.11 -1.34 9.51 -39.27 -0.37 -1.72 16 9 C -0.04 -0.57 5.48 -104.76 -0.57 -1.14 16 10 C -0.09 -1.44 5.27 -104.91 -0.55 -2.00 16 11 C -0.08 -1.49 8.79 -39.24 -0.34 -1.83 16 12 C -0.13 -2.45 9.68 -39.63 -0.38 -2.84 16 13 C -0.02 -0.42 5.07 -104.56 -0.53 -0.95 16 14 C 0.01 0.30 4.17 -29.04 -0.12 0.17 16 15 C -0.51 -14.61 9.65 -34.44 -0.33 -14.94 16 16 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 19 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 23 C -0.13 -2.40 9.68 -39.63 -0.38 -2.79 16 24 C -0.11 -1.76 9.51 -39.24 -0.37 -2.14 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.70 7.53 -51.93 -0.39 0.30 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.55 8.04 -52.49 -0.42 1.12 16 34 H 0.12 1.93 7.70 -52.49 -0.40 1.53 16 35 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 37 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.11 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -31.42 339.57 -8.92 -40.34 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.79 Total: 0.64 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -4.20 Total: -31.33 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.77 Total: -26.85 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.15 Total: -4.61 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.42 -8.92 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245362020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.659 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds