Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35838 * 116.99740 * 2 1 4 4 C 1.38589 * 120.11556 * 94.84644 * 3 2 1 5 5 C 1.50694 * 119.97155 * 359.97438 * 4 3 2 6 6 C 1.38188 * 120.05871 * 180.02562 * 4 3 2 7 7 C 1.38387 * 120.30377 * 0.02562 * 6 4 3 8 8 C 1.38005 * 120.23989 * 359.97438 * 7 6 4 9 9 C 1.39297 * 119.93167 * 0.02562 * 8 7 6 10 10 C 1.48332 * 120.14966 * 179.97438 * 9 8 7 11 11 C 1.39387 * 120.12359 * 124.22595 * 10 9 8 12 12 C 1.37987 * 119.87390 * 180.02562 * 11 10 9 13 13 C 1.38338 * 120.12474 * 359.97438 * 12 11 10 14 14 C 1.38300 * 120.25261 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.94193 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46741 * 90.00225 * 15 14 13 17 17 H 1.07998 * 120.00562 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99919 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00141 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47227 * 59.99636 * 20 18 16 22 22 H 1.48494 * 109.47643 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47407 * 300.00323 * 20 18 16 24 24 C 1.38035 * 120.12251 * 359.76385 * 14 13 12 25 25 H 1.09002 * 109.47396 * 305.00116 * 1 2 3 26 26 H 1.08994 * 109.47433 * 65.00591 * 1 2 3 27 27 H 1.09004 * 109.46976 * 185.00394 * 1 2 3 28 28 H 1.08996 * 109.47068 * 89.99927 * 5 4 3 29 29 H 1.08998 * 109.47223 * 210.00472 * 5 4 3 30 30 H 1.09001 * 109.47278 * 330.00218 * 5 4 3 31 31 H 1.08004 * 119.84456 * 180.02562 * 6 4 3 32 32 H 1.08005 * 119.87946 * 180.02562 * 7 6 4 33 33 H 1.08000 * 120.03070 * 180.28243 * 8 7 6 34 34 H 1.07999 * 120.06001 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.93469 * 180.02562 * 12 11 10 36 36 H 1.08004 * 119.87776 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.47563 * 209.99823 * 15 14 13 38 38 H 1.08993 * 109.47041 * 330.00241 * 15 14 13 39 39 H 0.96999 * 120.00583 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.06547 * 180.27646 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 2.4516 1.7840 1.1945 5 6 2.2083 1.0645 2.4961 6 6 3.0783 3.0156 1.1932 7 6 3.3038 3.6830 0.0021 8 6 2.9048 3.1233 -1.1946 9 6 2.2722 1.8823 -1.2048 10 6 1.8407 1.2765 -2.4882 11 6 2.2809 0.0025 -2.8433 12 6 1.8767 -0.5559 -4.0386 13 6 1.0360 0.1460 -4.8837 14 6 0.5962 1.4104 -4.5366 15 6 -0.3191 2.1691 -5.4628 16 6 -1.7527 1.8515 -5.1235 17 1 -1.9784 1.1683 -4.3180 18 6 -2.7761 2.4323 -5.8420 19 7 -2.5014 3.2638 -6.8231 20 14 -4.5531 2.0382 -5.4219 21 1 -4.8297 2.4356 -4.0180 22 1 -5.4550 2.7848 -6.3352 23 1 -4.7872 0.5801 -5.5787 24 6 0.9905 1.9771 -3.3413 25 1 -0.3634 0.5895 0.8418 26 1 -0.3634 0.4342 -0.9314 27 1 -0.3633 -1.0238 0.0896 28 1 3.0618 0.4259 2.7233 29 1 2.0772 1.7939 3.2954 30 1 1.3097 0.4534 2.4110 31 1 3.3936 3.4592 2.1261 32 1 3.7946 4.6451 0.0090 33 1 3.0865 3.6451 -2.1225 34 1 2.9376 -0.5461 -2.1844 35 1 2.2168 -1.5431 -4.3146 36 1 0.7218 -0.2950 -5.8182 37 1 -0.1471 3.2393 -5.3476 38 1 -0.1165 1.8773 -6.4932 39 1 -3.2213 3.6728 -7.3284 40 1 0.6429 2.9628 -3.0691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245362549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = -5.934288 kcal Electronic energy + Delta-G solvation = -21317.761962 eV Core-core repulsion = 18254.853590 eV Total energy + Delta-G solvation = -3062.908371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23210 -38.31509 -37.11115 -33.77682 -32.95085 -31.41629 -30.91919 -28.90746 -27.25537 -26.98685 -26.20373 -23.33168 -23.03025 -21.72155 -20.74641 -19.68062 -17.55229 -16.39031 -16.20168 -16.01004 -15.56185 -15.24251 -14.64954 -14.40352 -14.27450 -13.76927 -13.52646 -13.37396 -12.94624 -12.65257 -12.47744 -12.35008 -12.08456 -11.86696 -11.63539 -11.51875 -11.30001 -11.15054 -11.03176 -10.73710 -10.53764 -10.30150 -9.81260 -9.61455 -9.44775 -8.84311 -8.52407 -8.43930 -8.01123 -7.71804 -6.05923 -4.09840 1.12611 1.28722 2.06579 2.17453 3.29912 3.34335 3.37160 3.50145 4.03847 4.35908 4.52936 4.74728 4.81828 5.00961 5.22156 5.28578 5.33085 5.43508 5.47237 5.52438 5.55192 5.57733 5.62619 5.68275 5.76089 5.85739 5.96575 6.07606 6.16055 6.28224 6.36812 6.44049 6.56812 6.64673 6.77931 6.81026 7.10513 7.16486 7.20542 7.48697 7.63109 7.72002 7.83709 7.89650 8.30209 8.94894 9.53880 11.03970 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.004456 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.453470 B = 6281.692662 C = 6484.866605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.330 6.330 3 C 0.102 3.898 4 C -0.105 4.105 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.101 4.101 9 C -0.046 4.046 10 C -0.062 4.062 11 C -0.115 4.115 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.036 4.036 15 C 0.048 3.952 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.107 4.107 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 -3.093 15.134 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.247 6.247 3 C 0.058 3.942 4 C -0.106 4.106 5 C -0.163 4.163 6 C -0.134 4.134 7 C -0.139 4.139 8 C -0.119 4.119 9 C -0.046 4.046 10 C -0.062 4.062 11 C -0.133 4.133 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.037 4.037 15 C 0.012 3.988 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.125 4.125 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.520 -3.161 14.997 18.589 hybrid contribution -1.227 0.024 0.104 1.232 sum 9.292 -3.137 15.100 18.006 Atomic orbital electron populations 1.22975 0.78770 1.02889 1.01204 1.85958 1.19892 1.24589 1.94222 1.18525 0.97938 0.86653 0.91058 1.20068 1.00682 0.95116 0.94709 1.20648 1.02450 0.99846 0.93369 1.20905 0.99910 0.94390 0.98243 1.21070 1.00578 1.00041 0.92251 1.21200 0.97933 0.94300 0.98510 1.19273 0.98737 0.94091 0.92509 1.18542 0.99705 0.94940 0.92973 1.20868 1.01339 0.94367 0.96746 1.20965 0.99178 0.99434 0.94839 1.21163 0.97638 0.94907 0.99875 1.20595 0.93841 0.94270 0.94944 1.18347 0.92380 0.94885 0.93228 1.21007 0.89956 1.27002 1.17031 0.92613 1.25000 0.99206 0.95039 0.94990 1.69943 1.32601 1.29831 1.20910 0.86616 0.84361 0.78540 0.78290 1.20209 1.21182 1.20144 1.21093 0.97616 0.99882 0.93923 0.93956 0.92669 0.89048 0.91167 0.91798 0.91473 0.85918 0.85783 0.85366 0.86996 0.86940 0.86457 0.95385 0.95281 0.92770 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.71 101.05 1.08 1.56 16 2 O -0.33 -4.96 8.39 -19.23 -0.16 -5.12 16 3 C 0.10 1.53 5.63 -38.87 -0.22 1.31 16 4 C -0.11 -1.34 5.89 -104.51 -0.62 -1.95 16 5 C -0.11 -1.07 9.79 36.00 0.35 -0.71 16 6 C -0.12 -1.32 9.69 -39.54 -0.38 -1.70 16 7 C -0.12 -1.43 10.03 -39.61 -0.40 -1.82 16 8 C -0.10 -1.42 9.61 -39.27 -0.38 -1.80 16 9 C -0.05 -0.73 5.42 -104.77 -0.57 -1.29 16 10 C -0.06 -1.09 4.73 -104.90 -0.50 -1.59 16 11 C -0.12 -1.97 8.95 -39.25 -0.35 -2.32 16 12 C -0.13 -2.16 10.03 -39.64 -0.40 -2.56 16 13 C -0.12 -2.32 9.69 -39.52 -0.38 -2.70 16 14 C -0.04 -0.80 5.06 -104.67 -0.53 -1.33 16 15 C 0.05 1.24 5.10 -29.03 -0.15 1.10 16 16 C -0.51 -14.28 9.09 -34.44 -0.31 -14.59 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.11 -2.14 9.27 -39.25 -0.36 -2.50 16 25 H 0.04 0.50 7.83 -51.93 -0.41 0.10 16 26 H 0.05 0.87 7.83 -51.93 -0.41 0.46 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 31 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.11 1.77 8.05 -52.49 -0.42 1.35 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 37 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -30.29 342.26 -9.27 -39.56 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.78 Total: 0.88 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -4.21 Total: -31.33 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.16 Total: -5.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.29 -9.27 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245362549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.628 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds