Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.46847 * 2 1 4 4 C 1.37788 * 119.95234 * 264.99338 * 3 2 1 5 5 C 1.39718 * 119.90261 * 180.02562 * 4 3 2 6 6 C 1.47781 * 120.08986 * 180.02562 * 5 4 3 7 7 C 1.39234 * 120.33966 * 309.97979 * 6 5 4 8 8 C 1.38026 * 119.97657 * 179.97438 * 7 6 5 9 9 C 1.38960 * 120.68589 * 0.02562 * 8 7 6 10 10 C 1.36410 * 120.69689 * 359.97438 * 9 8 7 11 11 C 1.40765 * 119.98931 * 359.74338 * 10 9 8 12 12 C 1.40846 * 120.33056 * 180.27901 * 11 10 9 13 13 H 1.08002 * 119.99346 * 153.70621 * 12 11 10 14 14 C 1.40038 * 120.00365 * 333.69938 * 12 11 10 15 15 N 1.30799 * 119.99788 * 343.01621 * 14 12 11 16 16 Si 1.86792 * 120.00357 * 163.01924 * 14 12 11 17 17 H 1.48505 * 109.47123 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47692 * 119.99902 * 16 14 12 19 19 H 1.48499 * 109.47230 * 239.99968 * 16 14 12 20 20 C 1.39758 * 119.81958 * 0.02562 * 5 4 3 21 21 C 1.37744 * 119.90763 * 359.97438 * 20 5 4 22 22 C 1.38939 * 119.95751 * 85.25757 * 3 2 1 23 23 O 1.35819 * 119.90554 * 359.97438 * 22 3 2 24 24 C 1.42900 * 117.00147 * 180.25573 * 23 22 3 25 25 H 1.08995 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46801 * 300.00303 * 1 2 3 27 27 H 1.09009 * 109.46840 * 60.00000 * 1 2 3 28 28 H 1.08999 * 109.47007 * 240.00206 * 2 1 3 29 29 H 1.08993 * 109.47004 * 120.00226 * 2 1 3 30 30 H 1.07993 * 120.05046 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00854 * 359.97438 * 7 6 5 32 32 H 1.08005 * 119.65629 * 180.02562 * 8 7 6 33 33 H 1.07998 * 119.65271 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.00293 * 180.02562 * 10 9 8 35 35 H 0.97001 * 119.99953 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.04816 * 180.02562 * 20 5 4 37 37 H 1.07999 * 119.95500 * 179.97438 * 21 20 5 38 38 H 1.08995 * 109.46899 * 300.00037 * 24 23 22 39 39 H 1.09005 * 109.46977 * 60.00028 * 24 23 22 40 40 H 1.09001 * 109.47139 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3598 2.0347 -1.1893 5 6 2.8259 3.3518 -1.1880 6 6 3.1778 4.0144 -2.4612 7 6 4.0190 3.3831 -3.3736 8 6 4.3423 4.0086 -4.5608 9 6 3.8370 5.2682 -4.8593 10 6 3.0106 5.9120 -3.9855 11 6 2.6572 5.2981 -2.7690 12 6 1.7998 5.9538 -1.8642 13 1 1.1983 5.3780 -1.1765 14 6 1.7274 7.3523 -1.8562 15 7 2.6669 8.0591 -2.4295 16 14 0.2892 8.2084 -1.0268 17 1 -0.6311 7.1913 -0.4578 18 1 0.7946 9.0834 0.0615 19 1 -0.4396 9.0313 -2.0252 20 6 2.9584 4.0410 0.0206 21 6 2.6288 3.4199 1.2050 22 6 2.1697 2.1081 1.1996 23 8 1.8504 1.4977 2.3702 24 6 2.0099 2.2637 3.5659 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2572 1.4983 -2.1210 31 1 4.4182 2.4043 -3.1525 32 1 4.9949 3.5140 -5.2650 33 1 4.1012 5.7424 -5.7929 34 1 2.6239 6.8905 -4.2291 35 1 2.6170 9.0278 -2.4237 36 1 3.3179 5.0594 0.0258 37 1 2.7312 3.9516 2.1395 38 1 3.0524 2.5653 3.6677 39 1 1.3782 3.1507 3.5162 40 1 1.7204 1.6596 4.4258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245788695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -13.309516 kcal Electronic energy + Delta-G solvation = -21581.995373 eV Core-core repulsion = 18518.767188 eV Total energy + Delta-G solvation = -3063.228185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.77441 -37.93038 -36.50812 -33.80768 -33.70895 -30.95462 -29.76810 -29.02122 -28.05750 -26.62465 -25.23509 -23.44389 -22.05802 -21.08282 -20.56118 -19.24841 -17.52243 -17.23310 -15.84657 -15.61413 -15.44233 -15.01963 -14.33492 -13.86684 -13.78059 -13.49765 -13.45916 -12.94357 -12.84577 -12.62380 -12.42057 -11.77995 -11.73652 -11.56936 -11.45282 -11.36530 -11.14679 -11.08202 -10.77408 -10.56102 -10.48862 -10.45162 -10.12788 -9.58706 -9.41112 -9.24465 -8.23513 -7.81799 -7.42783 -7.02900 -6.76903 -4.38511 1.94278 2.02303 2.74659 3.02844 3.04624 3.09785 3.19509 3.64460 3.88142 4.43851 4.58888 5.16444 5.19992 5.28748 5.30680 5.49302 5.58941 5.65324 5.70335 5.74254 5.88724 6.06269 6.08291 6.11112 6.21330 6.28712 6.31816 6.43013 6.51339 6.62281 6.73988 6.99132 7.02378 7.07768 7.17777 7.28561 7.38941 7.49579 7.56115 7.83368 7.93560 8.03785 8.07893 8.23583 8.57428 8.81922 8.91740 10.09924 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.006318 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.643333 B = 4430.722900 C = 5708.471807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C -0.119 4.119 4 C -0.093 4.093 5 C -0.010 4.010 6 C -0.181 4.181 7 C -0.073 4.073 8 C -0.243 4.243 9 C -0.103 4.103 10 C -0.159 4.159 11 C 0.129 3.871 12 C -0.451 4.451 13 H 0.083 0.917 14 C 0.077 3.923 15 N -0.789 5.789 16 Si 0.902 3.098 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.063 4.063 21 C -0.208 4.208 22 C 0.098 3.902 23 O -0.321 6.321 24 C 0.030 3.970 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.281 0.719 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -7.603 6.902 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.010 4.010 6 C -0.183 4.183 7 C -0.092 4.092 8 C -0.262 4.262 9 C -0.121 4.121 10 C -0.178 4.178 11 C 0.126 3.874 12 C -0.480 4.480 13 H 0.101 0.899 14 C -0.142 4.142 15 N -0.414 5.414 16 Si 0.726 3.274 17 H -0.182 1.182 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.081 4.081 21 C -0.227 4.227 22 C 0.054 3.946 23 O -0.235 6.235 24 C -0.065 4.065 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.960 -7.541 6.905 10.411 hybrid contribution -0.441 0.966 0.458 1.156 sum -2.401 -6.575 7.363 10.159 Atomic orbital electron populations 1.21704 0.95413 1.00762 1.02123 1.20264 0.95742 0.92777 1.01871 1.18973 1.05836 0.96663 0.90445 1.21006 0.99112 0.94867 0.96086 1.18728 0.96944 0.92199 0.93151 1.18578 1.06670 0.98600 0.94445 1.20576 0.97472 0.97316 0.93792 1.20268 1.09088 0.97823 0.99043 1.20471 0.98555 0.94957 0.98131 1.21020 1.01935 1.00788 0.94046 1.17542 0.89118 0.89387 0.91307 1.19591 1.20733 0.90870 1.16798 0.89878 1.25930 0.95865 0.98029 0.94331 1.69820 1.29222 1.07936 1.34417 0.86350 0.81874 0.79638 0.79548 1.18223 1.19927 1.19624 1.21230 0.96455 0.99796 0.90620 1.21084 1.07876 0.94488 0.99206 1.18760 0.99167 0.91654 0.85066 1.85962 1.83130 1.41356 1.13055 1.22923 1.01105 0.96813 0.85676 0.93181 0.92673 0.92728 0.91765 0.91419 0.86181 0.89242 0.89495 0.89558 0.86565 0.90810 0.85125 0.86445 0.93097 0.93024 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.54 16 2 C -0.07 -1.00 5.78 -27.88 -0.16 -1.16 16 3 C -0.12 -2.07 5.14 -104.53 -0.54 -2.61 16 4 C -0.09 -1.77 9.14 -39.19 -0.36 -2.13 16 5 C -0.01 -0.22 4.92 -104.87 -0.52 -0.73 16 6 C -0.18 -4.33 5.52 -104.22 -0.58 -4.90 16 7 C -0.07 -1.65 9.51 -39.29 -0.37 -2.02 16 8 C -0.24 -5.41 10.03 -39.39 -0.40 -5.80 16 9 C -0.10 -2.38 9.96 -39.97 -0.40 -2.78 16 10 C -0.16 -4.03 8.62 -39.29 -0.34 -4.37 16 11 C 0.13 3.32 5.55 -106.55 -0.59 2.73 16 12 C -0.45 -11.45 7.13 -37.92 -0.27 -11.72 16 13 H 0.08 2.11 6.65 -52.49 -0.35 1.76 16 14 C 0.08 1.86 5.14 -17.32 -0.09 1.77 16 15 N -0.79 -19.69 11.03 55.55 0.61 -19.08 16 16 Si 0.90 18.34 29.59 -169.99 -5.03 13.31 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 C -0.06 -1.30 8.00 -39.19 -0.31 -1.62 16 21 C -0.21 -3.75 9.02 -39.49 -0.36 -4.10 16 22 C 0.10 1.71 6.67 -39.05 -0.26 1.45 16 23 O -0.32 -4.94 9.61 -19.17 -0.18 -5.12 16 24 C 0.03 0.35 9.81 101.05 0.99 1.34 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 29 H 0.07 0.94 7.67 -51.93 -0.40 0.55 16 30 H 0.12 2.16 8.04 -52.49 -0.42 1.74 16 31 H 0.09 1.80 8.04 -52.49 -0.42 1.38 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.12 3.03 6.26 -52.49 -0.33 2.70 16 35 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 36 H 0.13 2.87 7.33 -52.49 -0.38 2.48 16 37 H 0.12 1.82 6.28 -52.49 -0.33 1.49 16 38 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 39 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -27.06 331.99 -9.29 -36.35 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.52 Total: 7.74 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: -4.18 Total: -38.20 kcal Atomic # 7 Polarization: -19.69 SS G_CDS: 0.61 Total: -19.08 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.18 Total: -5.12 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.06 -9.29 -36.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245788695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.042 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds