Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.46847 * 2 1 4 4 C 1.37788 * 119.95234 * 264.99338 * 3 2 1 5 5 C 1.39718 * 119.90261 * 180.02562 * 4 3 2 6 6 C 1.47781 * 120.08986 * 180.02562 * 5 4 3 7 7 C 1.39234 * 120.33966 * 309.97979 * 6 5 4 8 8 C 1.38026 * 119.97657 * 179.97438 * 7 6 5 9 9 C 1.38960 * 120.68589 * 0.02562 * 8 7 6 10 10 C 1.36410 * 120.69689 * 359.97438 * 9 8 7 11 11 C 1.40765 * 119.98931 * 359.74338 * 10 9 8 12 12 C 1.40846 * 120.33056 * 180.27901 * 11 10 9 13 13 H 1.08002 * 119.99346 * 153.70621 * 12 11 10 14 14 C 1.40038 * 120.00365 * 333.69938 * 12 11 10 15 15 N 1.30799 * 119.99788 * 343.01621 * 14 12 11 16 16 Si 1.86792 * 120.00357 * 163.01924 * 14 12 11 17 17 H 1.48505 * 109.47123 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47692 * 119.99902 * 16 14 12 19 19 H 1.48499 * 109.47230 * 239.99968 * 16 14 12 20 20 C 1.39758 * 119.81958 * 0.02562 * 5 4 3 21 21 C 1.37744 * 119.90763 * 359.97438 * 20 5 4 22 22 C 1.38939 * 119.95751 * 85.25757 * 3 2 1 23 23 O 1.35819 * 119.90554 * 359.97438 * 22 3 2 24 24 C 1.42900 * 117.00147 * 180.25573 * 23 22 3 25 25 H 1.08995 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46801 * 300.00303 * 1 2 3 27 27 H 1.09009 * 109.46840 * 60.00000 * 1 2 3 28 28 H 1.08999 * 109.47007 * 240.00206 * 2 1 3 29 29 H 1.08993 * 109.47004 * 120.00226 * 2 1 3 30 30 H 1.07993 * 120.05046 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00854 * 359.97438 * 7 6 5 32 32 H 1.08005 * 119.65629 * 180.02562 * 8 7 6 33 33 H 1.07998 * 119.65271 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.00293 * 180.02562 * 10 9 8 35 35 H 0.97001 * 119.99953 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.04816 * 180.02562 * 20 5 4 37 37 H 1.07999 * 119.95500 * 179.97438 * 21 20 5 38 38 H 1.08995 * 109.46899 * 300.00037 * 24 23 22 39 39 H 1.09005 * 109.46977 * 60.00028 * 24 23 22 40 40 H 1.09001 * 109.47139 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3598 2.0347 -1.1893 5 6 2.8259 3.3518 -1.1880 6 6 3.1778 4.0144 -2.4612 7 6 4.0190 3.3831 -3.3736 8 6 4.3423 4.0086 -4.5608 9 6 3.8370 5.2682 -4.8593 10 6 3.0106 5.9120 -3.9855 11 6 2.6572 5.2981 -2.7690 12 6 1.7998 5.9538 -1.8642 13 1 1.1983 5.3780 -1.1765 14 6 1.7274 7.3523 -1.8562 15 7 2.6669 8.0591 -2.4295 16 14 0.2892 8.2084 -1.0268 17 1 -0.6311 7.1913 -0.4578 18 1 0.7946 9.0834 0.0615 19 1 -0.4396 9.0313 -2.0252 20 6 2.9584 4.0410 0.0206 21 6 2.6288 3.4199 1.2050 22 6 2.1697 2.1081 1.1996 23 8 1.8504 1.4977 2.3702 24 6 2.0099 2.2637 3.5659 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2572 1.4983 -2.1210 31 1 4.4182 2.4043 -3.1525 32 1 4.9949 3.5140 -5.2650 33 1 4.1012 5.7424 -5.7929 34 1 2.6239 6.8905 -4.2291 35 1 2.6170 9.0278 -2.4237 36 1 3.3179 5.0594 0.0258 37 1 2.7312 3.9516 2.1395 38 1 3.0524 2.5653 3.6677 39 1 1.3782 3.1507 3.5162 40 1 1.7204 1.6596 4.4258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245788695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -24.377755 kcal Electronic energy + Delta-G solvation = -21582.475328 eV Core-core repulsion = 18518.767188 eV Total energy + Delta-G solvation = -3063.708140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14099 -39.57531 -37.95315 -35.56973 -35.07475 -32.56820 -31.54410 -30.40897 -29.45647 -27.89322 -27.03268 -24.70605 -23.60762 -22.75333 -22.12052 -20.82530 -19.17651 -18.73021 -17.35924 -17.14003 -16.71352 -16.53130 -15.92550 -15.30228 -15.24686 -15.03379 -14.71857 -14.48849 -14.33067 -14.21148 -13.73921 -13.45257 -13.22138 -12.98727 -12.83814 -12.76431 -12.61105 -12.55172 -12.38695 -12.12710 -11.90219 -11.73630 -11.51848 -11.30322 -11.15532 -11.05988 -9.72506 -9.45479 -9.28379 -8.73828 -8.47193 -6.27698 0.39172 0.54490 1.01085 1.26219 1.35126 1.48092 1.50052 2.18156 2.48620 2.74206 2.94208 3.75180 3.90130 4.00063 4.15564 4.33773 4.41813 4.42779 4.48188 4.53026 4.60099 4.62327 4.64592 4.75057 4.78458 4.86073 4.94125 5.09879 5.12381 5.15573 5.27561 5.32928 5.42202 5.48013 5.54116 5.61078 5.74207 5.87315 5.93223 6.10421 6.19103 6.21997 6.40612 6.57568 6.71324 6.95300 7.05990 8.31630 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.006318 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.643333 B = 4430.722900 C = 5708.471807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.120 4.120 4 C -0.093 4.093 5 C -0.040 4.040 6 C -0.186 4.186 7 C -0.083 4.083 8 C -0.240 4.240 9 C -0.110 4.110 10 C -0.186 4.186 11 C 0.097 3.903 12 C -0.473 4.473 13 H 0.073 0.927 14 C 0.040 3.960 15 N -0.821 5.821 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.264 1.264 19 H -0.264 1.264 20 C -0.079 4.079 21 C -0.208 4.208 22 C 0.105 3.895 23 O -0.324 6.324 24 C 0.019 3.981 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.288 0.712 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -9.460 8.243 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.040 4.040 6 C -0.188 4.188 7 C -0.101 4.101 8 C -0.259 4.259 9 C -0.128 4.128 10 C -0.205 4.205 11 C 0.095 3.905 12 C -0.502 4.502 13 H 0.091 0.909 14 C -0.175 4.175 15 N -0.447 5.447 16 Si 0.789 3.211 17 H -0.186 1.186 18 H -0.189 1.189 19 H -0.189 1.189 20 C -0.097 4.097 21 C -0.226 4.226 22 C 0.060 3.940 23 O -0.238 6.238 24 C -0.075 4.075 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.453 -9.405 8.251 12.750 hybrid contribution -0.227 1.395 0.128 1.419 sum -2.680 -8.010 8.379 11.897 Atomic orbital electron populations 1.21673 0.94529 1.02226 1.01212 1.20335 0.96377 0.90696 1.03024 1.19340 1.04681 0.98210 0.89867 1.21079 0.98851 0.93882 0.97305 1.18756 0.99323 0.93495 0.92471 1.18952 1.06065 0.98106 0.95653 1.20913 0.97079 0.98364 0.93699 1.20649 1.08569 0.97297 0.99429 1.20749 0.97939 0.95510 0.98600 1.21009 1.03740 1.00744 0.95006 1.17897 0.90083 0.90749 0.91782 1.19608 1.21554 0.91688 1.17335 0.90939 1.26640 0.97921 0.98180 0.94807 1.69865 1.30644 1.08480 1.35739 0.85365 0.78544 0.78399 0.78788 1.18593 1.18890 1.18857 1.21067 0.97964 0.98944 0.91731 1.21254 1.07214 0.95040 0.99100 1.18874 0.97712 0.91210 0.86201 1.85971 1.82590 1.41911 1.13283 1.23276 1.01881 0.97501 0.84872 0.90563 0.93520 0.93694 0.90362 0.90506 0.85326 0.86830 0.86406 0.87379 0.88253 0.90159 0.87618 0.84167 0.92309 0.92749 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.89 71.98 0.71 -2.64 16 2 C -0.07 -1.75 5.78 29.85 0.17 -1.58 16 3 C -0.12 -4.02 5.14 -19.80 -0.10 -4.12 16 4 C -0.09 -3.52 9.14 22.52 0.21 -3.31 16 5 C -0.04 -1.77 4.92 -20.03 -0.10 -1.87 16 6 C -0.19 -9.12 5.52 -19.61 -0.11 -9.23 16 7 C -0.08 -3.68 9.51 22.46 0.21 -3.46 16 8 C -0.24 -10.48 10.03 22.39 0.22 -10.25 16 9 C -0.11 -5.13 9.96 22.02 0.22 -4.92 16 10 C -0.19 -9.82 8.62 22.46 0.19 -9.63 16 11 C 0.10 5.23 5.55 -21.12 -0.12 5.12 16 12 C -0.47 -25.18 7.13 23.35 0.17 -25.02 16 13 H 0.07 3.88 6.65 -2.91 -0.02 3.86 16 14 C 0.04 2.00 5.14 85.28 0.44 2.43 16 15 N -0.82 -42.64 11.03 21.84 0.24 -42.40 16 16 Si 0.97 38.55 29.59 68.60 2.03 40.58 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 20 C -0.08 -3.36 8.00 22.52 0.18 -3.18 16 21 C -0.21 -7.36 9.02 22.33 0.20 -7.16 16 22 C 0.10 3.50 6.67 22.62 0.15 3.65 16 23 O -0.32 -9.05 9.61 -91.51 -0.88 -9.93 16 24 C 0.02 0.38 9.81 113.37 1.11 1.49 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 29 H 0.08 1.89 7.67 -2.39 -0.02 1.87 16 30 H 0.13 4.52 8.04 -2.91 -0.02 4.49 16 31 H 0.11 4.42 8.04 -2.91 -0.02 4.39 16 32 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 33 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.10 5.48 6.26 -2.91 -0.02 5.46 16 35 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 36 H 0.11 4.94 7.33 -2.91 -0.02 4.92 16 37 H 0.14 4.17 6.28 -2.91 -0.02 4.15 16 38 H 0.06 1.09 7.65 -2.39 -0.02 1.07 16 39 H 0.05 1.06 7.66 -2.38 -0.02 1.05 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -60.15 331.99 6.19 -53.97 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 1.03 Total: 31.46 kcal Atomic # 6 Polarization: -77.43 SS G_CDS: 3.77 Total: -73.67 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.24 Total: -42.40 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.88 Total: -9.93 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -60.15 6.19 -53.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245788695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.588 kcal (2) G-P(sol) polarization free energy of solvation -60.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds