Wall clock time and date at job start Tue Mar 31 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 119.99900 * 2 1 4 4 H 1.48493 * 109.47399 * 270.00304 * 3 2 1 5 5 H 1.48499 * 109.47355 * 30.00826 * 3 2 1 6 6 H 1.48506 * 109.46711 * 150.00369 * 3 2 1 7 7 C 1.38649 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00829 * 359.97438 * 7 2 1 9 9 O 1.34837 * 119.99773 * 179.97438 * 7 2 1 10 10 C 1.35750 * 117.00010 * 185.05954 * 9 7 2 11 11 C 1.38881 * 120.07075 * 354.46088 * 10 9 7 12 12 C 1.38093 * 119.92868 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.07369 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.93217 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47500 * 89.99765 * 14 13 12 16 16 C 1.52997 * 109.47182 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46695 * 180.02562 * 16 15 14 18 18 C 1.38243 * 119.99731 * 269.72110 * 17 16 15 19 19 C 1.38235 * 119.99866 * 179.77043 * 18 17 16 20 20 C 1.38238 * 119.99938 * 0.50740 * 19 18 17 21 21 C 1.38235 * 119.99978 * 359.74626 * 20 19 18 22 22 C 1.38229 * 120.00422 * 89.99887 * 17 16 15 23 23 C 1.38298 * 120.13162 * 0.24929 * 13 12 11 24 24 C 1.38100 * 120.07519 * 359.45195 * 23 13 12 25 25 H 0.97001 * 120.00097 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.02713 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.96253 * 180.02562 * 12 11 10 28 28 H 1.09006 * 109.47111 * 329.99587 * 14 13 12 29 29 H 1.09001 * 109.46624 * 210.00021 * 14 13 12 30 30 H 1.08994 * 109.46747 * 59.99509 * 15 14 13 31 31 H 1.09003 * 109.46813 * 300.00275 * 15 14 13 32 32 H 1.08993 * 109.47206 * 59.99664 * 16 15 14 33 33 H 1.08998 * 109.46820 * 299.99570 * 16 15 14 34 34 H 1.08005 * 119.99587 * 359.97438 * 18 17 16 35 35 H 1.07998 * 119.99880 * 180.22632 * 19 18 17 36 36 H 1.08001 * 119.99663 * 179.72447 * 20 19 18 37 37 H 1.08004 * 119.99907 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.00090 * 359.97438 * 22 17 16 39 39 H 1.08010 * 119.95990 * 179.70370 * 23 13 12 40 40 H 1.07993 * 120.03734 * 180.26992 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4057 -0.1082 11 6 3.2233 -3.5745 -0.0952 12 6 3.8532 -4.7986 -0.2039 13 6 5.2295 -4.8614 -0.3251 14 6 5.9136 -6.1990 -0.4429 15 6 6.0216 -6.5885 -1.9186 16 6 6.7157 -7.9467 -2.0381 17 6 6.8225 -8.3299 -3.4916 18 6 5.8121 -9.0592 -4.0902 19 6 5.9079 -9.4067 -5.4247 20 6 7.0190 -9.0339 -6.1580 21 6 8.0317 -8.3092 -5.5580 22 6 7.9335 -7.9572 -4.2248 23 6 5.9795 -3.6995 -0.3327 24 6 5.3551 -2.4720 -0.2305 25 1 -0.4850 0.8400 0.0004 26 1 2.1486 -3.5260 -0.0002 27 1 3.2704 -5.7078 -0.1943 28 1 5.3333 -6.9522 0.0901 29 1 6.9119 -6.1358 -0.0098 30 1 6.6019 -5.8353 -2.4515 31 1 5.0233 -6.6515 -2.3517 32 1 6.1350 -8.6996 -1.5051 33 1 7.7139 -7.8839 -1.6049 34 1 4.9464 -9.3546 -3.5160 35 1 5.1169 -9.9733 -5.8933 36 1 7.0958 -9.3093 -7.1995 37 1 8.8999 -8.0183 -6.1308 38 1 8.7248 -7.3910 -3.7561 39 1 7.0546 -3.7521 -0.4226 40 1 5.9410 -1.5649 -0.2409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249973992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:05 Heat of formation + Delta-G solvation = 0.011134 kcal Electronic energy + Delta-G solvation = -20031.645821 eV Core-core repulsion = 16968.995262 eV Total energy + Delta-G solvation = -3062.650558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.50688 -39.16015 -37.09965 -34.91745 -32.45837 -31.69119 -31.04584 -30.23285 -28.81173 -26.05653 -24.75588 -22.73336 -22.40758 -22.03412 -20.87218 -20.17553 -17.87140 -17.26437 -16.91770 -15.65433 -15.42425 -14.92934 -14.74590 -14.27956 -13.91390 -13.79886 -13.71536 -13.60585 -13.51793 -13.07207 -12.66560 -12.45174 -12.42544 -12.18001 -11.76460 -11.67936 -11.32809 -11.16867 -11.01184 -10.74951 -10.64144 -10.50575 -10.46058 -10.13289 -9.37147 -9.08382 -8.87803 -8.79530 -8.24911 -7.26616 -6.40931 -4.07494 1.20177 1.23771 2.13824 2.23722 3.22283 3.26012 3.40662 3.62515 4.24281 4.44680 4.65971 4.66853 4.83441 4.87817 4.95578 5.03380 5.10512 5.12099 5.32472 5.34671 5.46697 5.50953 5.60916 5.70919 5.80379 5.83114 5.88302 5.90633 5.97648 6.11417 6.15147 6.30819 6.34668 6.39062 6.41794 6.52469 6.60705 6.81709 6.85468 7.07235 7.27032 7.33688 7.63248 7.81200 8.05037 8.94562 9.57522 10.66892 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.002743 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.844117 B =10206.574519 C =10410.757742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.156 3.844 11 C -0.219 4.219 12 C -0.071 4.071 13 C -0.173 4.173 14 C -0.062 4.062 15 C -0.107 4.107 16 C -0.083 4.083 17 C -0.076 4.076 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.074 4.074 24 C -0.191 4.191 25 H 0.279 0.721 26 H 0.132 0.868 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.274 -16.857 -7.065 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.105 3.895 11 C -0.238 4.238 12 C -0.089 4.089 13 C -0.174 4.174 14 C -0.100 4.100 15 C -0.145 4.145 16 C -0.120 4.120 17 C -0.076 4.076 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.148 4.148 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.092 4.092 24 C -0.211 4.211 25 H 0.089 0.911 26 H 0.150 0.850 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.146 -16.482 -7.034 22.831 hybrid contribution 0.013 0.717 -0.118 0.727 sum 14.159 -15.765 -7.152 22.364 Atomic orbital electron populations 1.69648 1.05567 1.28460 1.48229 1.24464 0.95025 0.98819 0.95722 0.86178 0.80321 0.81437 0.78947 1.19897 1.20796 1.18377 1.20767 0.76938 0.96609 1.52175 0.87671 1.83573 1.22571 1.25766 1.80520 1.19131 0.91727 0.85511 0.93172 1.21277 1.01083 0.91923 1.09553 1.20664 0.93592 0.96641 0.97982 1.19344 0.93625 0.94231 1.10180 1.20355 0.99746 0.94273 0.95591 1.21597 1.00878 0.95059 0.96937 1.20701 1.01663 0.98083 0.91598 1.19998 0.94224 0.96943 0.96428 1.21097 0.98622 0.98819 0.95112 1.21153 0.98006 1.00137 0.94414 1.21126 0.94508 0.99372 0.99797 1.21144 0.98917 0.98610 0.95092 1.21078 0.98012 1.00258 0.94347 1.20500 0.98294 0.91388 0.99058 1.20206 0.91969 0.97861 1.11022 0.91076 0.85033 0.87389 0.91959 0.91991 0.91817 0.91772 0.91036 0.91075 0.86079 0.86219 0.86358 0.86254 0.86127 0.87067 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.48 0.77 -24.86 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.84 28.62 -169.99 -4.86 16.98 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.39 -11.08 9.95 30.88 0.31 -10.77 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 9 O -0.22 -5.85 8.59 0.03 0.00 -5.85 16 10 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.22 -4.77 9.17 -39.40 -0.36 -5.13 16 12 C -0.07 -1.28 9.69 -39.61 -0.38 -1.66 16 13 C -0.17 -2.82 5.14 -104.58 -0.54 -3.35 16 14 C -0.06 -0.76 5.34 -27.88 -0.15 -0.91 16 15 C -0.11 -1.22 5.18 -26.73 -0.14 -1.36 16 16 C -0.08 -0.78 5.35 -27.88 -0.15 -0.93 16 17 C -0.08 -0.78 5.13 -104.62 -0.54 -1.31 16 18 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 19 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 20 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 22 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 23 C -0.07 -1.26 9.69 -39.61 -0.38 -1.64 16 24 C -0.19 -3.82 9.99 -39.39 -0.39 -4.22 16 25 H 0.28 7.49 8.31 -40.82 -0.34 7.16 16 26 H 0.13 3.01 5.64 -52.49 -0.30 2.72 16 27 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -30.05 341.27 -9.61 -39.66 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.62 Total: 2.83 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -5.04 Total: -33.90 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.77 Total: -24.86 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: 0.00 Total: -5.85 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.05 -9.61 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249973992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.675 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds