Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48501 * 109.47090 * 240.00448 * 3 2 1 5 5 H 1.48496 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46789 * 120.00613 * 3 2 1 7 7 C 1.38651 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00518 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00019 * 185.06419 * 9 7 2 11 11 C 1.38900 * 120.07042 * 354.40447 * 10 9 7 12 12 C 1.38072 * 119.93127 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.07136 * 0.02602 * 12 11 10 14 14 C 1.38275 * 120.13722 * 359.97438 * 13 12 11 15 15 C 1.38131 * 120.06710 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.03155 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.46965 * 264.99650 * 16 15 14 18 18 C 1.53004 * 109.47123 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47051 * 179.97438 * 18 17 16 20 20 C 1.38228 * 120.00217 * 269.72566 * 19 18 17 21 21 C 1.38235 * 119.99838 * 179.76695 * 20 19 18 22 22 C 1.38232 * 119.99861 * 0.51038 * 21 20 19 23 23 C 1.38234 * 120.00050 * 359.74289 * 22 21 20 24 24 C 1.38228 * 120.00196 * 0.02562 * 23 22 21 25 25 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.02889 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.96071 * 180.29951 * 12 11 10 28 28 H 1.08000 * 119.93033 * 179.97438 * 13 12 11 29 29 H 1.07997 * 119.96741 * 179.97438 * 14 13 12 30 30 H 1.08998 * 109.47650 * 24.99894 * 16 15 14 31 31 H 1.09005 * 109.47177 * 145.00068 * 16 15 14 32 32 H 1.08999 * 109.47302 * 300.00035 * 17 16 15 33 33 H 1.08998 * 109.47146 * 60.00458 * 17 16 15 34 34 H 1.08999 * 109.47012 * 300.00154 * 18 17 16 35 35 H 1.09004 * 109.46693 * 59.99719 * 18 17 16 36 36 H 1.08003 * 120.00358 * 0.02562 * 20 19 18 37 37 H 1.08001 * 120.00203 * 180.23350 * 21 20 19 38 38 H 1.08007 * 119.99942 * 179.72618 * 22 21 20 39 39 H 1.08001 * 119.99427 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.00259 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6962 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1057 11 6 3.4573 -3.4398 0.0911 12 6 4.2023 -4.5971 0.1999 13 6 3.5684 -5.8205 0.3227 14 6 2.1874 -5.8884 0.3376 15 6 1.4365 -4.7340 0.2302 16 6 -0.0685 -4.8090 0.2471 17 6 -0.5933 -4.8482 -1.1896 18 6 -2.1214 -4.9237 -1.1726 19 6 -2.6382 -4.9617 -2.5876 20 6 -2.9398 -3.7839 -3.2452 21 6 -3.4094 -3.8186 -4.5449 22 6 -3.5873 -5.0317 -5.1833 23 6 -3.2907 -6.2098 -4.5239 24 6 -2.8166 -6.1749 -3.2259 25 1 -0.4850 0.8401 0.0004 26 1 3.9527 -2.4848 -0.0044 27 1 5.2811 -4.5467 0.1935 28 1 4.1534 -6.7244 0.4073 29 1 1.6954 -6.8451 0.4332 30 1 -0.3816 -5.7109 0.7730 31 1 -0.4703 -3.9332 0.7568 32 1 -0.2803 -3.9463 -1.7156 33 1 -0.1916 -5.7240 -1.6994 34 1 -2.4347 -5.8254 -0.6465 35 1 -2.5227 -4.0477 -0.6629 36 1 -2.8047 -2.8362 -2.7450 37 1 -3.6415 -2.8981 -5.0600 38 1 -3.9584 -5.0590 -6.1973 39 1 -3.4301 -7.1576 -5.0226 40 1 -2.5852 -7.0953 -2.7106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249974050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = -0.428966 kcal Electronic energy + Delta-G solvation = -20919.232968 eV Core-core repulsion = 17856.563325 eV Total energy + Delta-G solvation = -3062.669642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.26499 -38.97580 -36.40059 -34.84495 -32.31520 -31.84922 -30.71814 -29.28242 -28.62426 -25.64111 -25.23756 -22.39707 -22.30676 -21.49453 -20.55084 -20.09084 -17.90610 -16.83123 -16.52197 -15.32255 -15.08642 -14.78121 -14.66763 -14.33848 -13.80838 -13.67167 -13.45732 -13.18946 -13.12354 -13.01937 -12.56313 -12.26237 -11.84453 -11.67326 -11.44714 -11.26953 -11.14648 -10.86984 -10.86451 -10.65462 -10.54899 -10.43518 -10.31530 -9.96750 -9.28345 -8.81767 -8.76072 -8.49991 -7.97383 -7.15070 -6.43420 -4.01381 1.52726 1.56330 2.20994 2.42438 3.13904 3.14871 3.17062 3.95362 3.97997 4.59160 4.99474 5.01473 5.10420 5.14366 5.27791 5.29496 5.48560 5.51346 5.64901 5.68166 5.76084 5.83340 5.90012 5.96939 5.99756 6.18710 6.24571 6.29207 6.33191 6.38624 6.45163 6.61701 6.67106 6.72738 6.73919 6.87621 6.95109 7.04370 7.16110 7.18936 7.31302 7.41186 7.50092 7.88964 8.01689 9.02937 9.73339 10.74255 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.005177 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.445361 B = 5406.790756 C = 7248.108192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.042 3.958 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.392 4.392 8 H 0.089 0.911 9 O -0.172 6.172 10 C 0.156 3.844 11 C -0.234 4.234 12 C -0.080 4.080 13 C -0.213 4.213 14 C -0.077 4.077 15 C -0.156 4.156 16 C -0.060 4.060 17 C -0.100 4.100 18 C -0.082 4.082 19 C -0.070 4.070 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.122 4.122 25 H 0.269 0.731 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -9.378 -4.791 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.106 0.894 9 O -0.075 6.075 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.098 4.098 13 C -0.232 4.232 14 C -0.095 4.095 15 C -0.157 4.157 16 C -0.097 4.097 17 C -0.138 4.138 18 C -0.120 4.120 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.140 4.140 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.317 -9.145 -4.811 11.198 hybrid contribution 0.729 0.864 -0.091 1.134 sum -3.588 -8.281 -4.902 10.270 Atomic orbital electron populations 1.70017 1.05813 1.27592 1.46231 1.25212 0.95807 0.98608 0.96633 0.85842 0.78767 0.80060 0.79146 1.19590 1.20315 1.19581 1.21254 0.91729 0.80990 1.52883 0.89360 1.83973 1.33945 1.11145 1.78428 1.19190 0.90054 0.87814 0.92747 1.21164 0.93864 0.98930 1.11397 1.20733 0.98352 0.92525 0.98197 1.20567 0.94355 0.96855 1.11467 1.20555 0.93559 0.96255 0.99139 1.18978 0.95301 0.90860 1.10551 1.20248 0.91377 1.01716 0.96373 1.21473 0.92670 1.02340 0.97310 1.20691 0.96637 1.02683 0.91960 1.20037 0.97218 0.92983 0.96749 1.21233 0.98530 0.98452 0.94875 1.21153 0.99678 0.97769 0.95117 1.21071 1.01585 0.92786 0.99722 1.21071 1.00103 0.97954 0.95061 1.21042 1.00364 0.97474 0.95105 0.92105 0.85698 0.87717 0.87847 0.87263 0.92632 0.90563 0.91056 0.92768 0.91513 0.90548 0.85544 0.86312 0.86609 0.86542 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.56 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.80 9.49 30.88 0.29 -10.51 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.73 8.90 0.03 0.00 -4.73 16 10 C 0.16 3.73 6.62 -39.11 -0.26 3.47 16 11 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 12 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 13 C -0.21 -3.80 10.04 -39.53 -0.40 -4.20 16 14 C -0.08 -1.40 9.68 -39.61 -0.38 -1.79 16 15 C -0.16 -3.24 5.15 -104.43 -0.54 -3.77 16 16 C -0.06 -1.12 5.07 -27.88 -0.14 -1.26 16 17 C -0.10 -1.76 5.18 -26.73 -0.14 -1.90 16 18 C -0.08 -1.25 5.35 -27.88 -0.15 -1.40 16 19 C -0.07 -1.04 5.13 -104.63 -0.54 -1.58 16 20 C -0.11 -1.72 9.70 -39.59 -0.38 -2.10 16 21 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 22 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 23 C -0.12 -1.51 10.05 -39.59 -0.40 -1.90 16 24 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 25 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 27 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 31 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 36 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -29.64 341.21 -9.78 -39.42 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.59 Total: 7.98 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: -5.07 Total: -39.39 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.76 Total: -23.81 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.00 Total: -4.73 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.64 -9.78 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249974050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.994 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds