Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47253 * 214.20232 * 3 2 1 5 5 N 1.46504 * 109.46715 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99991 * 269.99581 * 5 4 3 7 7 C 1.50698 * 109.47266 * 270.00608 * 6 5 4 8 8 H 1.08003 * 120.00353 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00191 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99573 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00119 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47678 * 89.99858 * 11 9 7 13 13 H 1.48509 * 109.46886 * 210.00184 * 11 9 7 14 14 H 1.48502 * 109.47024 * 329.99579 * 11 9 7 15 15 C 1.34770 * 119.99677 * 90.00654 * 5 4 3 16 16 O 1.21290 * 120.00061 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00655 * 359.97438 * 15 5 4 18 18 O 1.42893 * 109.47387 * 180.02562 * 17 15 5 19 19 C 1.42905 * 113.99965 * 179.97438 * 18 17 15 20 20 H 1.09001 * 110.56426 * 328.77850 * 19 18 17 21 21 C 1.54507 * 110.51430 * 206.09545 * 19 18 17 22 22 C 1.54477 * 104.06510 * 241.35656 * 21 19 18 23 23 O 1.44688 * 104.83958 * 23.98057 * 22 21 19 24 24 C 1.44428 * 105.13885 * 319.51776 * 23 22 21 25 25 H 1.09006 * 109.47197 * 94.20051 * 3 2 1 26 26 H 1.09006 * 109.47367 * 334.20352 * 3 2 1 27 27 H 1.09000 * 109.46536 * 59.99983 * 4 3 2 28 28 H 1.08992 * 109.46652 * 299.99890 * 4 3 2 29 29 H 1.09000 * 109.46853 * 30.00552 * 6 5 4 30 30 H 1.09002 * 109.46845 * 150.00621 * 6 5 4 31 31 H 0.96996 * 119.99877 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46735 * 59.99766 * 17 15 5 33 33 H 1.09006 * 109.46743 * 300.00732 * 17 15 5 34 34 H 1.09000 * 110.50930 * 0.02562 * 21 19 18 35 35 H 1.09000 * 110.50918 * 122.57516 * 21 19 18 36 36 H 1.08996 * 110.37125 * 142.80919 * 22 21 19 37 37 H 1.08999 * 110.37544 * 265.03608 * 22 21 19 38 38 H 1.09002 * 110.37130 * 281.60836 * 24 23 22 39 39 H 1.08999 * 110.37385 * 159.38239 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1939 0.8109 5 7 4.5825 1.1941 0.8113 6 6 5.3148 0.4813 1.8610 7 6 5.5654 1.4120 3.0194 8 1 5.2139 2.4325 2.9781 9 6 6.2433 0.9610 4.1321 10 7 6.6708 -0.2817 4.1826 11 14 6.5533 2.1145 5.5682 12 1 5.4233 2.0256 6.5275 13 1 7.8139 1.7272 6.2510 14 1 6.6694 3.5078 5.0678 15 6 5.2565 1.8503 -0.1539 16 8 6.4694 1.8509 -0.1533 17 6 4.5033 2.5833 -1.2339 18 8 5.4320 3.1935 -2.1321 19 6 4.8177 3.9176 -3.2000 20 1 3.8654 3.4628 -3.4730 21 6 5.7587 3.9796 -4.4240 22 6 6.0155 5.4896 -4.6240 23 8 5.7787 6.0811 -3.3250 24 6 4.6173 5.3977 -2.8054 25 1 2.9713 0.0761 -1.0250 26 1 2.9718 -0.9245 0.4472 27 1 2.7541 1.1184 1.8357 28 1 2.7537 2.1189 0.3636 29 1 4.7257 -0.3708 2.2003 30 1 6.2674 0.1297 1.4647 31 1 7.1481 -0.5989 4.9651 32 1 3.8760 3.3516 -0.7818 33 1 3.8771 1.8792 -1.7820 34 1 6.6923 3.4575 -4.2147 35 1 5.2725 3.5532 -5.3014 36 1 7.0455 5.6612 -4.9366 37 1 5.3232 5.8980 -5.3603 38 1 3.7092 5.7924 -3.2613 39 1 4.5712 5.4984 -1.7210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252548561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = -93.967752 kcal Electronic energy + Delta-G solvation = -22081.402359 eV Core-core repulsion = 18603.827308 eV Total energy + Delta-G solvation = -3477.575052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92249 -39.14089 -37.05761 -36.67411 -35.23006 -32.92275 -31.60538 -30.89575 -29.17799 -28.39807 -26.38731 -24.07444 -23.17704 -22.55379 -21.34057 -18.77744 -17.71820 -17.45120 -16.85020 -16.46861 -16.20641 -15.99645 -15.50095 -15.29036 -14.95605 -14.73413 -14.23234 -13.95771 -13.59328 -13.25385 -12.82607 -12.75419 -12.49448 -12.26769 -12.16053 -12.13759 -11.85459 -11.65414 -11.62545 -11.29850 -11.02889 -10.96432 -10.90343 -10.63278 -10.20982 -10.17970 -9.72609 -9.50907 -9.00074 -8.47892 -7.89877 -6.09623 -4.14257 2.66272 2.75072 3.10556 3.24511 3.28945 3.36498 3.41556 3.76711 3.81294 4.22224 4.37245 4.43326 4.63876 4.76977 4.85469 4.89172 4.95050 5.03597 5.15988 5.19924 5.24208 5.24779 5.27991 5.43915 5.45783 5.52564 5.64501 5.76312 5.85105 6.00594 6.51710 6.82656 7.11854 7.32296 7.40620 7.51334 7.86543 8.15058 8.19285 8.81614 8.95401 9.51439 10.98603 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.004837 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.518265 B = 5787.452645 C = 7405.347575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.116 3.884 5 N -0.596 5.596 6 C 0.246 3.754 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.509 6.509 17 C 0.038 3.962 18 O -0.343 6.343 19 C 0.053 3.947 20 H 0.078 0.922 21 C -0.153 4.153 22 C 0.045 3.955 23 O -0.367 6.367 24 C 0.021 3.979 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 5.566 -16.077 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.011 4.011 5 N -0.330 5.330 6 C 0.128 3.872 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.293 3.707 16 O -0.383 6.383 17 C -0.042 4.042 18 O -0.261 6.261 19 C -0.006 4.006 20 H 0.096 0.904 21 C -0.191 4.191 22 C -0.032 4.032 23 O -0.286 6.286 24 C -0.056 4.056 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.946 5.586 -15.820 18.564 hybrid contribution 0.079 0.375 0.774 0.864 sum -7.867 5.962 -15.046 17.995 Atomic orbital electron populations 1.81216 1.13033 1.08864 1.09078 1.29098 0.95087 0.93047 0.92917 1.19922 0.81353 1.03934 1.04104 1.21335 0.82244 0.95600 1.01888 1.48177 1.04785 1.52397 1.27643 1.19377 0.92661 0.91513 0.83679 1.21416 1.36853 0.97968 1.00647 0.92329 1.24910 0.95214 0.95232 0.98567 1.69914 1.38205 1.15221 1.29887 0.86508 0.77708 0.81201 0.82101 1.20650 1.21073 1.19835 1.19910 0.88236 0.80242 0.82320 1.90735 1.13533 1.59392 1.74607 1.22518 0.92449 0.97206 0.92060 1.88171 1.31256 1.68432 1.38236 1.23563 0.96568 0.92348 0.88132 0.90448 1.23051 1.01794 0.97786 0.96463 1.23454 1.02108 0.91395 0.86261 1.89243 1.47105 1.60335 1.31911 1.24003 0.89072 0.91329 1.01180 0.87647 0.86287 0.88456 0.90823 0.94519 0.93460 0.92639 0.90743 0.90852 0.88731 0.89607 0.88803 0.92256 0.91596 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.22 18.54 42.15 0.78 -5.44 16 2 C 0.22 2.45 15.43 -20.76 -0.32 2.12 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 5 N -0.60 -10.75 2.46 -175.06 -0.43 -11.18 16 6 C 0.25 5.78 5.16 -5.19 -0.03 5.76 16 7 C -0.53 -14.14 9.39 -34.44 -0.32 -14.46 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 11 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 15 C 0.51 9.58 7.75 -10.99 -0.09 9.50 16 16 O -0.51 -12.50 16.08 -14.36 -0.23 -12.73 16 17 C 0.04 0.50 4.84 36.01 0.17 0.67 16 18 O -0.34 -5.17 9.51 -55.14 -0.52 -5.70 16 19 C 0.05 0.56 3.58 -25.16 -0.09 0.47 16 20 H 0.08 0.59 7.87 -51.93 -0.41 0.19 16 21 C -0.15 -1.42 6.90 -25.17 -0.17 -1.60 16 22 C 0.04 0.41 7.63 37.93 0.29 0.70 16 23 O -0.37 -4.80 11.67 -35.23 -0.41 -5.21 16 24 C 0.02 0.23 7.37 37.94 0.28 0.51 16 25 H 0.11 0.80 7.22 -51.93 -0.37 0.42 16 26 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 28 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 29 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 30 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 32 H 0.07 0.83 7.40 -51.93 -0.38 0.44 16 33 H 0.07 0.70 7.15 -51.93 -0.37 0.33 16 34 H 0.09 1.04 8.00 -51.93 -0.42 0.62 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -35.30 339.65 -6.14 -41.45 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.59 Total: -3.92 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.57 Total: 6.07 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.09 Total: -41.35 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.17 Total: -23.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.30 -6.14 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252548561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.521 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds