Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47253 * 214.20232 * 3 2 1 5 5 N 1.46504 * 109.46715 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99991 * 269.99581 * 5 4 3 7 7 C 1.50698 * 109.47266 * 270.00608 * 6 5 4 8 8 H 1.08003 * 120.00353 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00191 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99573 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00119 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47678 * 89.99858 * 11 9 7 13 13 H 1.48509 * 109.46886 * 210.00184 * 11 9 7 14 14 H 1.48502 * 109.47024 * 329.99579 * 11 9 7 15 15 C 1.34770 * 119.99677 * 90.00654 * 5 4 3 16 16 O 1.21290 * 120.00061 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00655 * 359.97438 * 15 5 4 18 18 O 1.42893 * 109.47387 * 180.02562 * 17 15 5 19 19 C 1.42905 * 113.99965 * 179.97438 * 18 17 15 20 20 H 1.09001 * 110.56426 * 328.77850 * 19 18 17 21 21 C 1.54507 * 110.51430 * 206.09545 * 19 18 17 22 22 C 1.54477 * 104.06510 * 241.35656 * 21 19 18 23 23 O 1.44688 * 104.83958 * 23.98057 * 22 21 19 24 24 C 1.44428 * 105.13885 * 319.51776 * 23 22 21 25 25 H 1.09006 * 109.47197 * 94.20051 * 3 2 1 26 26 H 1.09006 * 109.47367 * 334.20352 * 3 2 1 27 27 H 1.09000 * 109.46536 * 59.99983 * 4 3 2 28 28 H 1.08992 * 109.46652 * 299.99890 * 4 3 2 29 29 H 1.09000 * 109.46853 * 30.00552 * 6 5 4 30 30 H 1.09002 * 109.46845 * 150.00621 * 6 5 4 31 31 H 0.96996 * 119.99877 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46735 * 59.99766 * 17 15 5 33 33 H 1.09006 * 109.46743 * 300.00732 * 17 15 5 34 34 H 1.09000 * 110.50930 * 0.02562 * 21 19 18 35 35 H 1.09000 * 110.50918 * 122.57516 * 21 19 18 36 36 H 1.08996 * 110.37125 * 142.80919 * 22 21 19 37 37 H 1.08999 * 110.37544 * 265.03608 * 22 21 19 38 38 H 1.09002 * 110.37130 * 281.60836 * 24 23 22 39 39 H 1.08999 * 110.37385 * 159.38239 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1939 0.8109 5 7 4.5825 1.1941 0.8113 6 6 5.3148 0.4813 1.8610 7 6 5.5654 1.4120 3.0194 8 1 5.2139 2.4325 2.9781 9 6 6.2433 0.9610 4.1321 10 7 6.6708 -0.2817 4.1826 11 14 6.5533 2.1145 5.5682 12 1 5.4233 2.0256 6.5275 13 1 7.8139 1.7272 6.2510 14 1 6.6694 3.5078 5.0678 15 6 5.2565 1.8503 -0.1539 16 8 6.4694 1.8509 -0.1533 17 6 4.5033 2.5833 -1.2339 18 8 5.4320 3.1935 -2.1321 19 6 4.8177 3.9176 -3.2000 20 1 3.8654 3.4628 -3.4730 21 6 5.7587 3.9796 -4.4240 22 6 6.0155 5.4896 -4.6240 23 8 5.7787 6.0811 -3.3250 24 6 4.6173 5.3977 -2.8054 25 1 2.9713 0.0761 -1.0250 26 1 2.9718 -0.9245 0.4472 27 1 2.7541 1.1184 1.8357 28 1 2.7537 2.1189 0.3636 29 1 4.7257 -0.3708 2.2003 30 1 6.2674 0.1297 1.4647 31 1 7.1481 -0.5989 4.9651 32 1 3.8760 3.3516 -0.7818 33 1 3.8771 1.8792 -1.7820 34 1 6.6923 3.4575 -4.2147 35 1 5.2725 3.5532 -5.3014 36 1 7.0455 5.6612 -4.9366 37 1 5.3232 5.8980 -5.3603 38 1 3.7092 5.7924 -3.2613 39 1 4.5712 5.4984 -1.7210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252548561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = -118.835574 kcal Electronic energy + Delta-G solvation = -22082.480709 eV Core-core repulsion = 18603.827308 eV Total energy + Delta-G solvation = -3478.653401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00109 -40.28114 -38.08084 -37.72548 -36.64440 -34.86661 -32.44538 -32.14937 -30.31946 -29.48714 -27.91198 -25.31452 -24.51204 -23.68210 -22.10503 -20.15695 -18.85213 -18.41205 -18.33858 -17.83210 -17.27791 -17.05857 -16.72688 -16.34299 -16.21250 -15.78194 -15.59220 -15.11106 -14.82250 -14.43487 -14.18233 -13.77329 -13.61681 -13.54311 -13.40977 -13.21717 -12.94655 -12.84097 -12.72033 -12.61364 -12.50547 -12.34648 -12.17906 -11.86057 -11.69630 -11.66355 -11.00533 -10.58147 -10.53771 -10.34759 -9.50392 -8.18263 -6.30234 1.39330 1.42435 1.51395 1.67456 1.81579 1.86415 2.04875 2.42281 2.84243 3.05919 3.13378 3.23480 3.60502 3.79164 3.91573 4.00120 4.12034 4.13044 4.24466 4.25254 4.33373 4.50465 4.54971 4.61230 4.78506 4.84230 4.85402 4.93908 5.06360 5.09947 5.14017 5.33701 5.59776 5.78160 5.87034 6.12738 6.24977 6.62615 6.73607 6.80406 7.34135 7.50476 8.88631 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.004837 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.518265 B = 5787.452645 C = 7405.347575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.247 3.753 3 C -0.039 4.039 4 C 0.110 3.890 5 N -0.594 5.594 6 C 0.260 3.740 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.957 3.043 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.498 3.502 16 O -0.582 6.582 17 C 0.048 3.952 18 O -0.385 6.385 19 C 0.046 3.954 20 H 0.119 0.881 21 C -0.153 4.153 22 C 0.040 3.960 23 O -0.408 6.408 24 C 0.016 3.984 25 H 0.139 0.861 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.040 0.960 30 H 0.002 0.998 31 H 0.266 0.734 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 6.413 -17.569 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.070 4.070 3 C -0.080 4.080 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.783 3.217 12 H -0.190 1.190 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.286 3.714 16 O -0.461 6.461 17 C -0.031 4.031 18 O -0.304 6.304 19 C -0.011 4.011 20 H 0.136 0.864 21 C -0.190 4.190 22 C -0.036 4.036 23 O -0.328 6.328 24 C -0.060 4.060 25 H 0.157 0.843 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.351 6.437 -17.326 21.184 hybrid contribution 0.826 0.126 1.196 1.459 sum -9.526 6.563 -16.130 19.849 Atomic orbital electron populations 1.81266 1.14406 1.10277 1.10744 1.29101 0.94864 0.91662 0.91418 1.19844 0.80122 1.02530 1.05483 1.21606 0.78604 0.98698 1.02532 1.48032 1.06958 1.51465 1.26190 1.18827 0.91552 0.91599 0.84146 1.21762 1.36503 0.98102 1.01690 0.92886 1.25713 0.95168 0.96632 1.01232 1.70017 1.39078 1.16745 1.30683 0.85566 0.77943 0.78903 0.79311 1.18960 1.21023 1.20127 1.21040 0.87795 0.79439 0.83084 1.90698 1.16918 1.61947 1.76500 1.22532 0.91460 0.98325 0.90786 1.88139 1.33372 1.69269 1.39667 1.23895 0.98272 0.91923 0.87024 0.86372 1.23111 1.00831 0.97613 0.97448 1.23669 1.03047 0.91450 0.85470 1.89193 1.48406 1.61387 1.33804 1.24169 0.89607 0.91666 1.00599 0.84311 0.86182 0.89520 0.87205 0.94207 0.98013 0.92548 0.87975 0.85956 0.91392 0.86199 0.88894 0.89394 0.88327 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.53 18.54 20.00 0.37 -12.16 16 2 C 0.25 4.79 15.43 89.44 1.38 6.17 16 3 C -0.04 -0.61 6.03 28.79 0.17 -0.44 16 4 C 0.11 2.46 5.17 86.38 0.45 2.91 16 5 N -0.59 -21.02 2.46 -826.15 -2.03 -23.05 16 6 C 0.26 12.55 5.16 85.63 0.44 12.99 16 7 C -0.54 -29.48 9.39 25.60 0.24 -29.24 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.66 5.46 84.66 0.46 1.12 16 10 N -0.93 -53.93 13.29 21.45 0.28 -53.65 16 11 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 C 0.50 18.57 7.75 87.66 0.68 19.25 16 16 O -0.58 -29.75 16.08 15.98 0.26 -29.49 16 17 C 0.05 1.12 4.84 71.24 0.34 1.46 16 18 O -0.39 -10.99 9.51 -129.94 -1.24 -12.23 16 19 C 0.05 0.84 3.58 31.61 0.11 0.95 16 20 H 0.12 1.14 7.87 -2.39 -0.02 1.12 16 21 C -0.15 -2.48 6.90 31.61 0.22 -2.27 16 22 C 0.04 0.66 7.63 72.48 0.55 1.22 16 23 O -0.41 -10.28 11.67 -148.98 -1.74 -12.02 16 24 C 0.02 0.31 7.37 72.49 0.53 0.85 16 25 H 0.14 1.38 7.22 -2.38 -0.02 1.36 16 26 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.09 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.11 1.71 6.44 -2.39 -0.02 1.69 16 29 H 0.04 1.88 8.07 -2.39 -0.02 1.86 16 30 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 31 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.10 1.83 7.40 -2.39 -0.02 1.81 16 33 H 0.12 1.63 7.15 -2.38 -0.02 1.62 16 34 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 Total: -1.00 -82.85 339.65 4.57 -78.28 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.05 Total: 3.24 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 5.59 Total: 14.97 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -1.37 Total: -88.86 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -2.72 Total: -53.74 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -82.85 4.57 -78.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252548561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.553 kcal (2) G-P(sol) polarization free energy of solvation -82.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds