Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47191 * 240.00354 * 2 1 3 5 5 C 1.50692 * 109.47395 * 174.99971 * 4 2 1 6 6 C 1.38230 * 119.62151 * 124.97730 * 5 4 2 7 7 C 1.38627 * 119.16454 * 179.78959 * 6 5 4 8 8 C 1.38669 * 118.41650 * 0.47939 * 7 6 5 9 9 C 1.38176 * 119.16765 * 359.49722 * 8 7 6 10 10 N 1.31858 * 119.61715 * 305.00251 * 5 4 2 11 11 N 1.46497 * 109.47388 * 120.00193 * 2 1 3 12 12 C 1.38232 * 120.00111 * 272.16631 * 11 2 1 13 13 C 1.38980 * 120.00076 * 3.28166 * 12 11 2 14 14 H 1.08008 * 119.99914 * 313.20639 * 13 12 11 15 15 C 1.40816 * 120.00156 * 133.20807 * 13 12 11 16 16 N 1.30337 * 120.00454 * 344.09580 * 15 13 12 17 17 Si 1.86810 * 119.99970 * 164.09439 * 15 13 12 18 18 H 1.48497 * 109.46854 * 90.00081 * 17 15 13 19 19 H 1.48496 * 109.46855 * 210.00073 * 17 15 13 20 20 H 1.48497 * 109.47066 * 329.99965 * 17 15 13 21 21 C 1.41159 * 119.99873 * 183.28559 * 12 11 2 22 22 C 1.43197 * 119.99788 * 173.98662 * 21 12 11 23 23 N 5.93077 * 107.43183 * 82.74602 * 2 1 3 24 24 C 1.43196 * 119.99942 * 353.98731 * 21 12 11 25 25 N 4.96404 * 109.07820 * 132.54949 * 2 1 3 26 26 H 1.08998 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46652 * 299.99890 * 1 2 3 28 28 H 1.09002 * 109.47201 * 59.99553 * 1 2 3 29 29 H 1.09000 * 109.47077 * 54.99373 * 4 2 1 30 30 H 1.09006 * 109.46894 * 295.00503 * 4 2 1 31 31 H 1.08007 * 120.41522 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.79261 * 180.22625 * 7 6 5 33 33 H 1.08005 * 120.41801 * 179.78351 * 8 7 6 34 34 H 1.07997 * 119.62478 * 180.25872 * 9 8 7 35 35 H 0.97006 * 119.99659 * 92.15841 * 11 2 1 36 36 H 0.96996 * 120.00541 * 185.06673 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 6 4.3045 -1.7634 -1.4128 7 6 5.6851 -1.6543 -1.4750 8 6 6.2500 -0.3890 -1.4239 9 6 5.4237 0.7139 -1.3241 10 7 4.1134 0.5727 -1.2719 11 7 2.0184 -0.6906 1.1961 12 6 2.2062 0.0120 2.3716 13 6 1.8673 1.3582 2.4383 14 1 2.1744 2.0319 1.6520 15 6 1.1237 1.8438 3.5311 16 7 0.4916 1.0120 4.3105 17 14 1.0432 3.6802 3.8638 18 1 -0.1122 4.2648 3.1368 19 1 0.8797 3.9124 5.3214 20 1 2.2980 4.3232 3.3978 21 6 2.7422 -0.6379 3.5043 22 6 3.0570 0.1162 4.6802 23 7 3.3067 0.7145 5.6131 24 6 2.9711 -2.0512 3.4774 25 7 3.1526 -3.1724 3.4561 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6054 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 3.8305 -2.7334 -1.4450 32 1 6.3061 -2.5341 -1.5570 33 1 7.3223 -0.2668 -1.4664 34 1 5.8556 1.7031 -1.2881 35 1 2.2099 -1.6410 1.1631 36 1 -0.0796 1.3492 5.0182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256398292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = 82.504648 kcal Electronic energy + Delta-G solvation = -21279.204580 eV Core-core repulsion = 18148.883617 eV Total energy + Delta-G solvation = -3130.320963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11703 -37.71225 -35.54452 -34.64005 -33.78321 -32.62810 -32.18166 -30.91001 -28.28726 -26.96317 -26.52706 -23.46685 -22.42676 -21.29718 -20.52014 -18.25366 -17.12063 -16.80038 -16.09368 -16.00878 -15.40443 -15.25759 -14.56660 -14.06910 -13.59771 -13.17397 -13.06458 -12.90347 -12.50568 -12.32986 -12.21860 -12.02052 -11.84765 -11.70009 -11.61388 -11.38981 -11.27905 -11.15207 -11.01438 -10.66706 -10.61113 -10.44369 -10.01814 -9.75355 -9.63959 -9.25386 -9.02397 -8.80506 -7.04794 -6.38643 -5.03403 1.23232 1.40638 2.75617 3.06767 3.10475 3.19029 3.82975 3.91401 4.03391 4.13053 4.31869 4.42179 4.64017 4.73167 4.76897 4.93336 5.13591 5.20602 5.35457 5.46570 5.53512 5.59683 5.76763 5.86488 5.91255 5.94505 6.00291 6.17184 6.25091 6.27111 6.52339 6.71145 6.79238 6.85609 6.89523 7.25523 7.51613 7.93139 8.15268 8.37344 8.57313 8.76400 9.12794 9.55274 9.92809 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.006381 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.797901 B = 4387.302423 C = 4853.997461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.162 3.838 3 H 0.100 0.900 4 C -0.083 4.083 5 C 0.142 3.858 6 C -0.172 4.172 7 C -0.074 4.074 8 C -0.184 4.184 9 C 0.106 3.894 10 N -0.473 5.473 11 N -0.730 5.730 12 C 0.459 3.541 13 C -0.489 4.489 14 H 0.100 0.900 15 C 0.100 3.900 16 N -0.750 5.750 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.272 1.272 20 H -0.255 1.255 21 C -0.295 4.295 22 C 0.355 3.645 23 N -0.547 5.547 24 C 0.306 3.694 25 N -0.548 5.548 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.382 0.618 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 0.733 -15.265 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 H 0.118 0.882 4 C -0.121 4.121 5 C 0.005 3.995 6 C -0.192 4.192 7 C -0.100 4.100 8 C -0.203 4.203 9 C -0.052 4.052 10 N -0.182 5.182 11 N -0.355 5.355 12 C 0.343 3.657 13 C -0.522 4.522 14 H 0.118 0.882 15 C -0.128 4.128 16 N -0.372 5.372 17 Si 0.731 3.269 18 H -0.192 1.192 19 H -0.197 1.197 20 H -0.179 1.179 21 C -0.315 4.315 22 C 0.046 3.954 23 N -0.229 5.229 24 C 0.001 3.999 25 N -0.231 5.231 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.216 0.784 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.806 0.733 -13.724 13.862 hybrid contribution 0.370 -0.253 -0.075 0.454 sum 2.176 0.480 -13.799 13.978 Atomic orbital electron populations 1.22187 0.95741 1.01546 1.02505 1.20729 0.93392 0.97872 0.82415 0.88237 1.20988 0.89160 1.02058 0.99913 1.21169 0.96596 0.88352 0.93411 1.21964 0.94613 0.99718 1.02872 1.21519 0.94996 0.97761 0.95681 1.22073 1.01231 0.93772 1.03270 1.22713 0.88991 0.98962 0.94499 1.67446 1.12535 1.26503 1.11685 1.45246 1.70200 1.09908 1.10145 1.16997 0.78389 0.89986 0.80278 1.18979 1.33404 0.92684 1.07139 0.88237 1.25804 0.93477 1.00626 0.92849 1.69483 1.17067 1.37734 1.12920 0.86268 0.80008 0.81632 0.78972 1.19188 1.19661 1.17899 1.12649 1.39992 0.83129 0.95685 1.24327 0.88958 0.91392 0.90716 1.80929 1.19172 1.10277 1.12553 1.25513 0.90258 0.92076 0.92099 1.81040 1.19245 1.12592 1.10270 0.93342 0.90554 0.92857 0.88925 0.90311 0.85210 0.85278 0.85229 0.82964 0.78441 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.50 37.16 0.35 -1.90 16 2 C 0.16 2.42 2.35 -67.93 -0.16 2.26 16 3 H 0.10 1.65 6.17 -51.93 -0.32 1.33 16 4 C -0.08 -1.00 5.17 -27.89 -0.14 -1.15 16 5 C 0.14 1.94 5.91 -82.59 -0.49 1.46 16 6 C -0.17 -2.13 9.71 -39.44 -0.38 -2.52 16 7 C -0.07 -0.84 10.18 -39.28 -0.40 -1.24 16 8 C -0.18 -2.08 10.11 -39.44 -0.40 -2.48 16 9 C 0.11 1.35 11.18 -17.55 -0.20 1.15 16 10 N -0.47 -6.95 9.78 -9.48 -0.09 -7.04 16 11 N -0.73 -13.20 4.82 -51.92 -0.25 -13.45 16 12 C 0.46 10.00 6.15 -83.59 -0.51 9.49 16 13 C -0.49 -10.77 7.20 -38.33 -0.28 -11.04 16 14 H 0.10 2.10 6.83 -52.48 -0.36 1.74 16 15 C 0.10 2.25 4.19 -17.21 -0.07 2.18 16 16 N -0.75 -17.93 11.46 55.59 0.64 -17.30 16 17 Si 0.91 18.10 29.60 -169.99 -5.03 13.07 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.29 -7.09 5.39 -104.94 -0.57 -7.66 16 22 C 0.35 9.23 11.95 -22.47 -0.27 8.96 16 23 N -0.55 -14.71 18.54 41.84 0.78 -13.93 16 24 C 0.31 7.32 14.10 -22.47 -0.32 7.01 16 25 N -0.55 -13.22 18.54 41.84 0.78 -12.44 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.27 7.89 -51.93 -0.41 0.86 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 31 H 0.13 1.37 7.95 -52.48 -0.42 0.95 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.38 6.88 7.47 -40.82 -0.30 6.57 16 36 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -28.56 328.21 -5.96 -34.52 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.89 Total: 7.10 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.83 Total: 4.53 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 1.85 Total: -64.16 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.56 -5.96 -34.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256398292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.025 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds