Wall clock time and date at job start Tue Mar 31 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47191 * 240.00354 * 2 1 3 5 5 C 1.50692 * 109.47395 * 174.99971 * 4 2 1 6 6 C 1.38230 * 119.62151 * 124.97730 * 5 4 2 7 7 C 1.38627 * 119.16454 * 179.78959 * 6 5 4 8 8 C 1.38669 * 118.41650 * 0.47939 * 7 6 5 9 9 C 1.38176 * 119.16765 * 359.49722 * 8 7 6 10 10 N 1.31858 * 119.61715 * 305.00251 * 5 4 2 11 11 N 1.46497 * 109.47388 * 120.00193 * 2 1 3 12 12 C 1.38232 * 120.00111 * 272.16631 * 11 2 1 13 13 C 1.38980 * 120.00076 * 3.28166 * 12 11 2 14 14 H 1.08008 * 119.99914 * 313.20639 * 13 12 11 15 15 C 1.40816 * 120.00156 * 133.20807 * 13 12 11 16 16 N 1.30337 * 120.00454 * 344.09580 * 15 13 12 17 17 Si 1.86810 * 119.99970 * 164.09439 * 15 13 12 18 18 H 1.48497 * 109.46854 * 90.00081 * 17 15 13 19 19 H 1.48496 * 109.46855 * 210.00073 * 17 15 13 20 20 H 1.48497 * 109.47066 * 329.99965 * 17 15 13 21 21 C 1.41159 * 119.99873 * 183.28559 * 12 11 2 22 22 C 1.43197 * 119.99788 * 173.98662 * 21 12 11 23 23 N 5.93077 * 107.43183 * 82.74602 * 2 1 3 24 24 C 1.43196 * 119.99942 * 353.98731 * 21 12 11 25 25 N 4.96404 * 109.07820 * 132.54949 * 2 1 3 26 26 H 1.08998 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46652 * 299.99890 * 1 2 3 28 28 H 1.09002 * 109.47201 * 59.99553 * 1 2 3 29 29 H 1.09000 * 109.47077 * 54.99373 * 4 2 1 30 30 H 1.09006 * 109.46894 * 295.00503 * 4 2 1 31 31 H 1.08007 * 120.41522 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.79261 * 180.22625 * 7 6 5 33 33 H 1.08005 * 120.41801 * 179.78351 * 8 7 6 34 34 H 1.07997 * 119.62478 * 180.25872 * 9 8 7 35 35 H 0.97006 * 119.99659 * 92.15841 * 11 2 1 36 36 H 0.96996 * 120.00541 * 185.06673 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 6 4.3045 -1.7634 -1.4128 7 6 5.6851 -1.6543 -1.4750 8 6 6.2500 -0.3890 -1.4239 9 6 5.4237 0.7139 -1.3241 10 7 4.1134 0.5727 -1.2719 11 7 2.0184 -0.6906 1.1961 12 6 2.2062 0.0120 2.3716 13 6 1.8673 1.3582 2.4383 14 1 2.1744 2.0319 1.6520 15 6 1.1237 1.8438 3.5311 16 7 0.4916 1.0120 4.3105 17 14 1.0432 3.6802 3.8638 18 1 -0.1122 4.2648 3.1368 19 1 0.8797 3.9124 5.3214 20 1 2.2980 4.3232 3.3978 21 6 2.7422 -0.6379 3.5043 22 6 3.0570 0.1162 4.6802 23 7 3.3067 0.7145 5.6131 24 6 2.9711 -2.0512 3.4774 25 7 3.1526 -3.1724 3.4561 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6054 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 3.8305 -2.7334 -1.4450 32 1 6.3061 -2.5341 -1.5570 33 1 7.3223 -0.2668 -1.4664 34 1 5.8556 1.7031 -1.2881 35 1 2.2099 -1.6410 1.1631 36 1 -0.0796 1.3492 5.0182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256398292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:36 Heat of formation + Delta-G solvation = 66.790602 kcal Electronic energy + Delta-G solvation = -21279.885992 eV Core-core repulsion = 18148.883617 eV Total energy + Delta-G solvation = -3131.002376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.06116 -39.24032 -37.21146 -36.54589 -35.52252 -34.02981 -33.15487 -32.11122 -29.84667 -28.55860 -27.71748 -24.39376 -23.60564 -22.73463 -21.84972 -20.09897 -18.76287 -17.88261 -17.43834 -17.19023 -16.84608 -16.27778 -15.91677 -15.14745 -14.82294 -14.67705 -14.55495 -14.23044 -13.99268 -13.83491 -13.66870 -13.52259 -13.36030 -13.23051 -13.01844 -12.92102 -12.80910 -12.71290 -12.54580 -12.38004 -12.15664 -11.90823 -11.51147 -11.24909 -10.71373 -10.62023 -10.19848 -9.74349 -8.79592 -8.11490 -6.83680 0.31364 0.49948 1.06320 1.42793 1.52108 1.55162 2.11427 2.17940 2.35616 2.47303 2.80614 2.97798 3.02378 3.50825 3.62103 3.81867 4.00411 4.10644 4.19793 4.35349 4.39525 4.51910 4.58686 4.76967 4.84852 4.85863 4.95776 5.03078 5.08985 5.12621 5.29281 5.38401 5.40454 5.63529 5.64809 5.84042 5.93527 6.23281 6.62588 6.90082 7.13070 7.21469 7.26071 7.56226 8.19308 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.006381 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.797901 B = 4387.302423 C = 4853.997461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.084 0.916 4 C -0.075 4.075 5 C 0.121 3.879 6 C -0.182 4.182 7 C -0.082 4.082 8 C -0.183 4.183 9 C 0.085 3.915 10 N -0.501 5.501 11 N -0.717 5.717 12 C 0.464 3.536 13 C -0.493 4.493 14 H 0.108 0.892 15 C 0.074 3.926 16 N -0.779 5.779 17 Si 0.951 3.049 18 H -0.242 1.242 19 H -0.288 1.288 20 H -0.257 1.257 21 C -0.316 4.316 22 C 0.354 3.646 23 N -0.575 5.575 24 C 0.310 3.690 25 N -0.555 5.555 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.384 0.616 36 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 0.674 -17.195 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.102 0.898 4 C -0.113 4.113 5 C -0.016 4.016 6 C -0.202 4.202 7 C -0.108 4.108 8 C -0.203 4.203 9 C -0.072 4.072 10 N -0.211 5.211 11 N -0.340 5.340 12 C 0.345 3.655 13 C -0.526 4.526 14 H 0.126 0.874 15 C -0.151 4.151 16 N -0.402 5.402 17 Si 0.773 3.227 18 H -0.166 1.166 19 H -0.214 1.214 20 H -0.181 1.181 21 C -0.337 4.337 22 C 0.047 3.953 23 N -0.259 5.259 24 C 0.005 3.995 25 N -0.240 5.240 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.185 0.815 35 H 0.218 0.782 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.827 0.660 -15.711 15.831 hybrid contribution 0.395 -0.251 0.440 0.642 sum 2.222 0.409 -15.271 15.437 Atomic orbital electron populations 1.22099 0.94672 1.02017 1.02442 1.20887 0.94066 0.97190 0.82314 0.89821 1.20965 0.88615 1.02843 0.98875 1.21416 0.97312 0.88600 0.94289 1.22239 0.95248 1.00094 1.02615 1.21916 0.95116 0.98798 0.94936 1.22399 1.02533 0.93364 1.01996 1.23113 0.88872 1.00375 0.94822 1.67422 1.13614 1.27342 1.12727 1.45325 1.68671 1.09920 1.10103 1.17012 0.77531 0.90060 0.80848 1.19161 1.33101 0.93014 1.07353 0.87411 1.26376 0.93044 1.03263 0.92439 1.69534 1.17997 1.39072 1.13580 0.85617 0.80731 0.78461 0.77940 1.16571 1.21373 1.18085 1.12832 1.41632 0.83202 0.95987 1.24720 0.88505 0.91169 0.90861 1.80899 1.20646 1.11051 1.13284 1.25484 0.90075 0.91990 0.91991 1.81028 1.19859 1.12613 1.10456 0.92581 0.93516 0.89986 0.86866 0.88616 0.83637 0.82878 0.82642 0.81490 0.78234 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.50 71.98 0.68 -3.31 16 2 C 0.16 4.53 2.35 44.99 0.11 4.64 16 3 H 0.08 2.68 6.17 -2.39 -0.01 2.67 16 4 C -0.07 -1.64 5.17 29.85 0.15 -1.49 16 5 C 0.12 3.10 5.91 42.55 0.25 3.35 16 6 C -0.18 -4.15 9.71 22.36 0.22 -3.93 16 7 C -0.08 -1.69 10.18 22.47 0.23 -1.47 16 8 C -0.18 -3.78 10.11 22.36 0.23 -3.56 16 9 C 0.08 2.06 11.18 84.67 0.95 3.01 16 10 N -0.50 -14.16 9.78 -183.89 -1.80 -15.96 16 11 N -0.72 -25.18 4.82 -318.17 -1.53 -26.72 16 12 C 0.46 20.05 6.15 39.03 0.24 20.29 16 13 C -0.49 -21.48 7.20 23.08 0.17 -21.31 16 14 H 0.11 4.46 6.83 -2.91 -0.02 4.44 16 15 C 0.07 3.30 4.19 85.55 0.36 3.65 16 16 N -0.78 -37.41 11.46 21.97 0.25 -37.16 16 17 Si 0.95 36.51 29.60 68.60 2.03 38.54 16 18 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 19 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 C -0.32 -15.21 5.39 -20.07 -0.11 -15.32 16 22 C 0.35 18.60 11.95 88.33 1.06 19.66 16 23 N -0.57 -31.24 18.54 19.00 0.35 -30.89 16 24 C 0.31 14.70 14.10 88.33 1.25 15.95 16 25 N -0.56 -26.40 18.54 19.00 0.35 -26.04 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.50 7.89 -2.39 -0.02 1.48 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.10 1.77 7.87 -2.38 -0.02 1.75 16 31 H 0.15 2.71 7.95 -2.91 -0.02 2.69 16 32 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.38 13.33 7.47 -92.70 -0.69 12.63 16 36 H 0.29 13.35 8.29 -92.71 -0.77 12.59 16 Total: -1.00 -60.76 328.21 5.86 -54.90 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.44 Total: 23.16 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 5.77 Total: 20.16 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -2.38 Total: -136.77 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Total: -60.76 5.86 -54.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256398292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.689 kcal (2) G-P(sol) polarization free energy of solvation -60.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds