Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48497 * 109.46964 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47035 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47257 * 149.99655 * 3 2 1 7 7 C 1.37875 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99491 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.35016 * 124.18872 * 269.71988 * 12 11 10 14 14 O 1.21234 * 127.18680 * 2.35033 * 13 12 11 15 15 C 1.51200 * 105.62655 * 182.21791 * 13 12 11 16 16 H 1.08999 * 112.16563 * 113.19174 * 15 13 12 17 17 C 1.53168 * 110.98589 * 238.63875 * 15 13 12 18 18 H 1.09002 * 109.72492 * 45.05259 * 17 15 13 19 19 O 1.42908 * 109.59497 * 284.66608 * 17 15 13 20 20 C 1.53179 * 108.71306 * 164.90005 * 17 15 13 21 21 C 1.52889 * 110.51812 * 296.61832 * 20 17 15 22 22 C 1.53658 * 109.68301 * 62.29596 * 21 20 17 23 23 N 1.46474 * 107.38136 * 308.92399 * 22 21 20 24 24 C 1.33512 * 129.86802 * 232.13272 * 23 22 21 25 25 O 1.21534 * 124.01815 * 349.02638 * 24 23 22 26 26 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 28 28 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 30 30 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 0.96693 * 113.99820 * 180.77336 * 19 17 15 34 34 H 1.09002 * 109.26611 * 176.35621 * 20 17 15 35 35 H 1.08992 * 109.24257 * 56.87531 * 20 17 15 36 36 H 1.08998 * 109.43689 * 302.22826 * 21 20 17 37 37 H 1.09001 * 109.39876 * 182.33287 * 21 20 17 38 38 H 1.09003 * 109.87512 * 189.45574 * 22 21 20 39 39 H 1.09005 * 109.93449 * 68.42664 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0400 -4.0176 0.0015 13 6 6.2971 -4.7320 1.1179 14 8 6.1353 -4.3799 2.2667 15 6 6.8259 -6.0642 0.6363 16 1 7.8738 -6.2099 0.8987 17 6 5.9546 -7.2166 1.1451 18 1 4.9016 -6.9680 1.0124 19 8 6.2225 -7.4446 2.5302 20 6 6.2898 -8.4775 0.3425 21 6 5.9377 -8.2834 -1.1325 22 6 6.7806 -7.1406 -1.7197 23 7 6.6351 -5.9871 -0.8288 24 6 6.2927 -4.7274 -1.1087 25 8 6.2190 -4.2771 -2.2351 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 3.6587 -3.1501 -0.8892 30 1 3.6580 -3.1505 0.8907 31 1 5.9157 -2.1223 -0.8873 32 1 5.9142 -2.1229 0.8927 33 1 5.7125 -8.1704 2.9150 34 1 5.7218 -9.3185 0.7402 35 1 7.3553 -8.6883 0.4333 36 1 4.8797 -8.0375 -1.2235 37 1 6.1445 -9.2039 -1.6783 38 1 6.4184 -6.8873 -2.7161 39 1 7.8276 -7.4395 -1.7711 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320765132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = -93.701018 kcal Electronic energy + Delta-G solvation = -22851.436472 eV Core-core repulsion = 19373.872987 eV Total energy + Delta-G solvation = -3477.563485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.58968 -38.62788 -38.57535 -36.23686 -35.81320 -34.41394 -32.84081 -31.45179 -30.60779 -27.57792 -26.43376 -24.32880 -22.86483 -22.70630 -21.06060 -20.27848 -19.97612 -18.03267 -17.38039 -16.88470 -16.49623 -16.47864 -15.74821 -15.45816 -15.18225 -14.62925 -14.19676 -14.13538 -14.05794 -13.79876 -13.75227 -13.43261 -12.90618 -12.73531 -12.27330 -11.77723 -11.70182 -11.56891 -11.46747 -11.28388 -10.90229 -10.80668 -10.47981 -10.19957 -10.01030 -9.89954 -9.76027 -9.39660 -9.22285 -9.08296 -8.51638 -6.02107 -4.00426 1.63920 2.01732 2.83839 3.01409 3.34021 3.40927 3.44613 3.61212 3.98422 4.07442 4.38027 4.44068 4.47705 4.58066 4.67621 4.91356 4.99202 5.13447 5.29823 5.30927 5.35349 5.36904 5.45057 5.58621 5.64018 5.73014 5.78480 5.88719 6.26719 6.45316 6.56893 6.81734 7.13304 7.22848 7.25865 7.40369 7.43480 7.79315 8.09580 8.55378 9.01937 9.59802 11.11379 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.004117 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.077404 B = 6800.035187 C = 7046.110692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.113 3.887 12 N -0.577 5.577 13 C 0.525 3.475 14 O -0.450 6.450 15 C 0.097 3.903 16 H 0.134 0.866 17 C 0.111 3.889 18 H 0.069 0.931 19 O -0.552 6.552 20 C -0.150 4.150 21 C -0.138 4.138 22 C 0.149 3.851 23 N -0.624 5.624 24 C 0.708 3.292 25 O -0.535 6.535 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.385 0.615 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.798 -19.982 -0.172 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.006 4.006 12 N -0.322 5.322 13 C 0.310 3.690 14 O -0.317 6.317 15 C -0.011 4.011 16 H 0.152 0.848 17 C 0.050 3.950 18 H 0.087 0.913 19 O -0.357 6.357 20 C -0.188 4.188 21 C -0.177 4.177 22 C 0.028 3.972 23 N -0.365 5.365 24 C 0.411 3.589 25 O -0.408 6.408 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.233 0.767 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.911 -18.909 -0.352 25.371 hybrid contribution -0.096 0.383 0.060 0.400 sum 16.815 -18.526 -0.292 25.021 Atomic orbital electron populations 1.69913 1.06319 1.26901 1.51151 1.25020 0.94747 0.99187 0.94490 0.86765 0.80400 0.83525 0.78551 1.20213 1.21362 1.18913 1.21072 0.89253 0.94521 1.50897 0.91107 1.19505 0.97473 0.91213 0.96586 1.21819 0.90554 1.01105 1.01861 1.22088 0.97415 0.76919 1.04217 1.46814 1.61238 1.16802 1.07355 1.20529 0.76977 0.86333 0.85122 1.90821 1.48696 1.74432 1.17770 1.22192 1.02802 0.94460 0.81669 0.84848 1.21796 0.97896 0.92924 0.82346 0.91312 1.86558 1.69068 1.57838 1.22243 1.22236 1.03287 0.97657 0.95598 1.22044 1.01284 0.98856 0.95480 1.21587 1.00411 0.82151 0.93059 1.47566 1.72928 1.09181 1.06821 1.15594 0.77680 0.81087 0.84582 1.90989 1.56712 1.72786 1.20311 0.92725 0.96237 0.96617 0.92136 0.92259 0.88834 0.89103 0.76700 0.90404 0.90430 0.90677 0.89421 0.88215 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.11 -2.41 5.48 -26.73 -0.15 -2.56 16 11 C 0.11 1.98 5.73 -4.04 -0.02 1.96 16 12 N -0.58 -9.17 2.62 -121.00 -0.32 -9.49 16 13 C 0.52 7.85 7.62 -10.63 -0.08 7.77 16 14 O -0.45 -8.04 17.78 5.60 0.10 -7.94 16 15 C 0.10 1.04 3.57 -67.95 -0.24 0.80 16 16 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 17 C 0.11 0.98 3.05 -26.55 -0.08 0.90 16 18 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 19 O -0.55 -5.04 13.32 -35.23 -0.47 -5.51 16 20 C -0.15 -0.83 5.40 -26.70 -0.14 -0.97 16 21 C -0.14 -0.77 6.09 -26.45 -0.16 -0.93 16 22 C 0.15 1.10 7.01 -3.71 -0.03 1.07 16 23 N -0.62 -6.92 3.02 -171.84 -0.52 -7.44 16 24 C 0.71 10.84 8.34 -88.59 -0.74 10.11 16 25 O -0.54 -9.86 17.29 5.34 0.09 -9.77 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 28 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.59 7.83 -51.93 -0.41 1.18 16 32 H 0.09 1.51 8.02 -51.93 -0.42 1.10 16 33 H 0.38 1.79 9.08 45.56 0.41 2.21 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -36.48 324.93 -7.28 -43.76 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.98 Total: -2.39 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.19 Total: 4.08 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.06 Total: -44.59 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.28 Total: -23.22 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.48 -7.28 -43.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320765132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.944 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds