Wall clock time and date at job start Tue Mar 31 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48507 * 109.46870 * 269.99636 * 3 2 1 5 5 H 1.48493 * 109.47420 * 29.99958 * 3 2 1 6 6 H 1.48496 * 109.47108 * 150.00066 * 3 2 1 7 7 C 1.37872 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46917 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46786 * 179.97438 * 11 10 9 13 13 C 1.37109 * 123.91882 * 269.31599 * 12 11 10 14 14 O 1.21232 * 128.24380 * 2.66780 * 13 12 11 15 15 C 1.51211 * 104.57178 * 182.31263 * 13 12 11 16 16 H 1.09001 * 111.55275 * 114.32424 * 15 13 12 17 17 C 1.53167 * 110.80875 * 239.14412 * 15 13 12 18 18 H 1.08994 * 109.60286 * 285.78189 * 17 15 13 19 19 O 1.42903 * 109.59732 * 46.09354 * 17 15 13 20 20 C 1.53186 * 108.83310 * 165.92996 * 17 15 13 21 21 C 1.53201 * 110.35741 * 296.72978 * 20 17 15 22 22 C 1.53655 * 109.78841 * 62.18861 * 21 20 17 23 23 N 1.46516 * 107.35859 * 308.94841 * 22 21 20 24 24 C 1.33514 * 129.69497 * 233.41766 * 23 22 21 25 25 O 1.21538 * 124.00645 * 349.18588 * 24 23 22 26 26 H 0.97011 * 120.00288 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46650 * 60.00187 * 9 7 2 28 28 H 1.08996 * 109.47184 * 300.00107 * 9 7 2 29 29 H 1.09000 * 109.47485 * 59.99948 * 10 9 7 30 30 H 1.09004 * 109.47137 * 300.00380 * 10 9 7 31 31 H 1.08999 * 109.47504 * 60.00280 * 11 10 9 32 32 H 1.08996 * 109.46981 * 299.99679 * 11 10 9 33 33 H 0.96700 * 114.00311 * 179.68719 * 19 17 15 34 34 H 1.08997 * 109.26847 * 56.82904 * 20 17 15 35 35 H 1.09004 * 109.26752 * 176.28676 * 20 17 15 36 36 H 1.09005 * 109.38269 * 302.09724 * 21 20 17 37 37 H 1.08999 * 109.35215 * 182.27101 * 21 20 17 38 38 H 1.08997 * 109.88114 * 189.48408 * 22 21 20 39 39 H 1.09007 * 109.93654 * 68.44528 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9870 0.0033 12 7 2.4322 -6.1005 0.0037 13 6 2.9190 -6.6913 -1.1338 14 8 2.7014 -6.3903 -2.2878 15 6 3.8052 -7.8092 -0.6325 16 1 3.4077 -8.7874 -0.9032 17 6 5.2420 -7.6304 -1.1322 18 1 5.2955 -7.8852 -2.1905 19 8 5.6492 -6.2734 -0.9448 20 6 6.1626 -8.5580 -0.3330 21 6 6.1602 -8.1648 1.1477 22 6 4.7456 -8.3248 1.7261 23 7 3.8256 -7.6153 0.8335 24 6 2.9225 -6.6727 1.1138 25 8 2.5840 -6.3694 2.2410 26 1 -0.4851 0.8401 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8719 -3.6036 0.8926 30 1 2.8719 -3.6051 -0.8873 31 1 0.8538 -5.0454 -0.8869 32 1 0.8533 -5.0442 0.8931 33 1 6.5529 -6.0902 -1.2359 34 1 5.8119 -9.5852 -0.4319 35 1 7.1764 -8.4853 -0.7269 36 1 6.4772 -7.1266 1.2469 37 1 6.8501 -8.8084 1.6934 38 1 4.7022 -7.8902 2.7247 39 1 4.4792 -9.3809 1.7697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320765134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:00 Heat of formation + Delta-G solvation = -98.219536 kcal Electronic energy + Delta-G solvation = -23047.957461 eV Core-core repulsion = 19570.198038 eV Total energy + Delta-G solvation = -3477.759423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29143 -38.57237 -38.43390 -35.81677 -35.63369 -34.16966 -32.74231 -31.23453 -30.62709 -27.08264 -26.34067 -24.31747 -22.88010 -22.51624 -20.92034 -20.28365 -19.88902 -17.58443 -17.24554 -16.58706 -16.44724 -16.14133 -15.65964 -15.49622 -14.84949 -14.70576 -14.35553 -14.05638 -13.98350 -13.85677 -13.65583 -12.92130 -12.51629 -12.29925 -12.26738 -12.03311 -11.57663 -11.40794 -11.12658 -10.94550 -10.81546 -10.75516 -10.48091 -10.25904 -9.96535 -9.68360 -9.64643 -9.22489 -9.06019 -8.83669 -8.28516 -5.93636 -3.95306 1.76791 2.19723 3.01151 3.22707 3.37338 3.42801 3.47257 3.64455 3.94124 4.26876 4.41170 4.51868 4.53492 4.57482 4.84886 4.92705 5.10275 5.19282 5.27699 5.41475 5.42156 5.45940 5.55641 5.80277 5.84562 5.87279 5.94918 6.13270 6.47047 6.69456 6.88872 7.12659 7.31605 7.33418 7.53592 7.72397 7.86559 8.05574 8.30118 8.49153 9.10546 9.68045 11.17918 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.004136 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.580283 B = 6767.768410 C = 6888.685006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.117 3.883 12 N -0.577 5.577 13 C 0.541 3.459 14 O -0.460 6.460 15 C 0.089 3.911 16 H 0.138 0.862 17 C 0.108 3.892 18 H 0.078 0.922 19 O -0.551 6.551 20 C -0.149 4.149 21 C -0.137 4.137 22 C 0.153 3.847 23 N -0.620 5.620 24 C 0.712 3.288 25 O -0.542 6.542 26 H 0.260 0.740 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.383 0.617 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.184 -22.863 -0.994 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.003 4.003 12 N -0.323 5.323 13 C 0.328 3.672 14 O -0.329 6.329 15 C -0.019 4.019 16 H 0.155 0.845 17 C 0.047 3.953 18 H 0.096 0.904 19 O -0.357 6.357 20 C -0.187 4.187 21 C -0.175 4.175 22 C 0.032 3.968 23 N -0.359 5.359 24 C 0.414 3.586 25 O -0.416 6.416 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.105 -22.353 -0.640 25.428 hybrid contribution 1.046 0.873 -0.279 1.391 sum 13.151 -21.480 -0.919 25.203 Atomic orbital electron populations 1.69966 1.06020 1.26550 1.51011 1.25007 0.94854 0.99206 0.95368 0.86581 0.79851 0.83450 0.78051 1.20678 1.21218 1.19911 1.21202 0.93029 0.90906 1.50378 0.92726 1.19041 0.93832 0.90952 0.97460 1.21963 0.99739 0.92963 1.01157 1.22034 0.90241 0.84101 1.03874 1.47208 1.44159 1.33903 1.06995 1.20797 0.79108 0.82356 0.84920 1.90785 1.58975 1.66138 1.16997 1.22414 0.96292 1.00328 0.82840 0.84510 1.21860 0.91214 0.83684 0.98516 0.90422 1.86641 1.35954 1.25696 1.87395 1.22241 1.00358 0.99929 0.96202 1.22012 0.96553 1.03578 0.95340 1.21497 0.86417 0.95824 0.93095 1.47452 1.39571 1.42253 1.06656 1.15540 0.79506 0.79061 0.84451 1.90973 1.63593 1.66736 1.20312 0.93030 0.96298 0.96226 0.92780 0.92822 0.89420 0.89087 0.76855 0.90462 0.90555 0.90295 0.90180 0.88588 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.40 9.11 -34.44 -0.31 -15.71 16 8 H 0.05 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.12 -2.75 5.48 -26.74 -0.15 -2.90 16 11 C 0.12 2.27 5.76 -4.04 -0.02 2.25 16 12 N -0.58 -10.01 2.67 -120.40 -0.32 -10.33 16 13 C 0.54 8.36 7.11 -9.67 -0.07 8.29 16 14 O -0.46 -8.24 17.88 5.60 0.10 -8.14 16 15 C 0.09 0.94 3.72 -67.98 -0.25 0.69 16 16 H 0.14 0.97 8.14 -51.93 -0.42 0.54 16 17 C 0.11 0.89 3.47 -26.55 -0.09 0.80 16 18 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 19 O -0.55 -6.02 11.79 -35.23 -0.42 -6.43 16 20 C -0.15 -0.78 5.54 -26.53 -0.15 -0.93 16 21 C -0.14 -0.87 5.94 -26.29 -0.16 -1.03 16 22 C 0.15 1.28 7.01 -3.69 -0.03 1.26 16 23 N -0.62 -7.48 2.96 -171.85 -0.51 -7.99 16 24 C 0.71 12.00 8.35 -88.58 -0.74 11.26 16 25 O -0.54 -10.97 17.27 5.33 0.09 -10.88 16 26 H 0.26 7.57 8.31 -40.81 -0.34 7.23 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 32 H 0.09 1.76 7.85 -51.93 -0.41 1.35 16 33 H 0.38 2.49 9.09 45.56 0.41 2.90 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.67 7.60 -51.93 -0.39 0.27 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.91 8.00 -51.93 -0.42 0.50 16 39 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -37.35 326.71 -7.61 -44.95 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.99 Total: -2.66 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.20 Total: 6.11 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.09 Total: -45.33 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.22 Total: -25.45 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.35 -7.61 -44.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320765134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.267 kcal (2) G-P(sol) polarization free energy of solvation -37.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds