Wall clock time and date at job start Tue Mar 31 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47333 * 179.97438 * 11 10 9 13 13 C 1.35003 * 124.18123 * 89.99846 * 12 11 10 14 14 O 1.21230 * 127.18278 * 357.38091 * 13 12 11 15 15 C 1.51209 * 105.63689 * 177.36290 * 13 12 11 16 16 H 1.08999 * 111.55448 * 246.99676 * 15 13 12 17 17 C 1.53169 * 110.80808 * 121.18849 * 15 13 12 18 18 H 1.09000 * 109.59737 * 75.40842 * 17 15 13 19 19 O 1.42903 * 109.59593 * 314.93730 * 17 15 13 20 20 C 1.53182 * 108.70354 * 195.17387 * 17 15 13 21 21 C 1.52888 * 110.52264 * 63.36166 * 20 17 15 22 22 C 1.53652 * 109.69978 * 297.69474 * 21 20 17 23 23 N 1.46514 * 107.35900 * 51.05385 * 22 21 20 24 24 C 1.33544 * 129.73979 * 126.85427 * 23 22 21 25 25 O 1.21542 * 124.02276 * 10.78348 * 24 23 22 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 30 30 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 31 31 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 32 32 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 33 33 H 0.96698 * 113.99572 * 180.02562 * 19 17 15 34 34 H 1.09007 * 109.26587 * 303.09768 * 20 17 15 35 35 H 1.08998 * 109.23610 * 183.61617 * 20 17 15 36 36 H 1.09001 * 109.42952 * 177.62238 * 21 20 17 37 37 H 1.09001 * 109.39094 * 57.74002 * 21 20 17 38 38 H 1.09001 * 109.88455 * 291.58840 * 22 21 20 39 39 H 1.09008 * 109.87860 * 170.51707 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 7 6.0398 -4.0179 -0.0022 13 6 6.2925 -4.7324 -1.1194 14 8 6.1220 -4.3821 -2.2674 15 6 6.8331 -6.0607 -0.6400 16 1 7.8807 -6.1886 -0.9127 17 6 5.9596 -7.2157 -1.1390 18 1 6.1544 -7.3908 -2.1971 19 8 4.5810 -6.8904 -0.9497 20 6 6.3051 -8.4747 -0.3377 21 6 5.9669 -8.2789 1.1404 22 6 6.8129 -7.1338 1.7181 23 7 6.6568 -5.9819 0.8262 24 6 6.2967 -4.7271 1.1074 25 8 6.2093 -4.2810 2.2346 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 3.6579 -3.1514 0.8880 30 1 3.6585 -3.1495 -0.8920 31 1 5.9148 -2.1220 -0.8910 32 1 5.9149 -2.1236 0.8890 33 1 3.9702 -7.5797 -1.2444 34 1 7.3702 -8.6839 -0.4382 35 1 5.7347 -9.3171 -0.7288 36 1 6.1799 -9.1982 1.6859 37 1 4.9093 -8.0346 1.2403 38 1 7.8608 -7.4313 1.7593 39 1 6.4595 -6.8794 2.7174 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320765135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:03 Heat of formation + Delta-G solvation = -92.661048 kcal Electronic energy + Delta-G solvation = -23104.153075 eV Core-core repulsion = 19626.634686 eV Total energy + Delta-G solvation = -3477.518389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.49030 -38.65100 -38.48557 -35.86210 -35.71502 -34.28097 -32.74710 -31.39055 -30.76673 -27.53581 -26.36714 -24.36510 -22.81191 -22.62669 -20.87133 -20.20699 -19.96058 -17.63923 -17.30122 -16.79942 -16.49711 -16.37830 -15.79325 -15.50691 -14.92290 -14.74745 -14.20127 -14.04983 -14.02176 -13.95025 -13.69176 -12.97769 -12.71620 -12.44375 -12.27275 -12.14946 -11.71230 -11.58813 -11.22984 -11.13708 -10.85119 -10.75895 -10.30060 -10.11683 -9.97588 -9.86024 -9.69313 -9.29609 -9.13205 -8.96849 -8.47338 -5.97766 -3.95450 1.74924 2.13916 2.98696 3.17215 3.36868 3.43371 3.47485 3.62053 3.89444 4.25574 4.39864 4.51449 4.52043 4.56027 4.83184 4.90414 5.08111 5.17915 5.25665 5.35456 5.40026 5.40552 5.52967 5.68344 5.73060 5.81592 5.90484 5.97043 6.39092 6.56125 6.66678 6.90408 7.24926 7.32050 7.33963 7.47352 7.51419 7.84371 8.22223 8.61034 9.07334 9.64309 11.15854 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.004235 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.776772 B = 6610.197131 C = 6711.175406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.571 5.571 13 C 0.537 3.463 14 O -0.467 6.467 15 C 0.091 3.909 16 H 0.139 0.861 17 C 0.109 3.891 18 H 0.079 0.921 19 O -0.551 6.551 20 C -0.150 4.150 21 C -0.137 4.137 22 C 0.152 3.848 23 N -0.620 5.620 24 C 0.710 3.290 25 O -0.541 6.541 26 H 0.262 0.738 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.384 0.616 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.971 -20.425 -0.968 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.214 1.214 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.151 4.151 11 C -0.005 4.005 12 N -0.316 5.316 13 C 0.324 3.676 14 O -0.336 6.336 15 C -0.017 4.017 16 H 0.156 0.844 17 C 0.048 3.952 18 H 0.097 0.903 19 O -0.357 6.357 20 C -0.187 4.187 21 C -0.175 4.175 22 C 0.031 3.969 23 N -0.359 5.359 24 C 0.413 3.587 25 O -0.414 6.414 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.233 0.767 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.932 -19.305 -0.610 26.355 hybrid contribution 0.062 0.315 -0.243 0.402 sum 17.994 -18.990 -0.853 26.175 Atomic orbital electron populations 1.69921 1.06304 1.26814 1.51351 1.25025 0.94747 0.99153 0.94584 0.86765 0.80390 0.83556 0.78519 1.20245 1.18938 1.21405 1.21093 0.89297 0.94521 1.50597 0.91064 1.19513 0.97459 0.91378 0.96446 1.21785 0.90494 1.00778 1.02052 1.22049 0.97573 0.76989 1.03907 1.46655 1.60912 1.16638 1.07362 1.20371 0.76296 0.85950 0.85029 1.90787 1.50012 1.74773 1.18050 1.22469 1.01354 0.95238 0.82672 0.84369 1.21822 0.82945 0.91865 0.98534 0.90349 1.86635 1.14725 1.47173 1.87147 1.22187 1.02840 0.97509 0.96211 1.21962 1.01898 0.98262 0.95380 1.21514 0.99836 0.82411 0.93110 1.47482 1.72344 1.09287 1.06803 1.15590 0.77502 0.81154 0.84480 1.90974 1.57157 1.72990 1.20326 0.92787 0.96342 0.96715 0.92175 0.92119 0.89317 0.89028 0.76736 0.90459 0.90541 0.90120 0.90234 0.90797 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.86 13.96 55.43 0.77 -28.08 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.52 -15.53 9.66 -34.44 -0.33 -15.86 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.49 5.48 -26.73 -0.15 -2.63 16 11 C 0.11 2.10 5.72 -4.05 -0.02 2.08 16 12 N -0.57 -9.54 2.62 -120.99 -0.32 -9.86 16 13 C 0.54 8.08 6.97 -10.63 -0.07 8.01 16 14 O -0.47 -8.21 17.78 5.60 0.10 -8.11 16 15 C 0.09 0.92 3.79 -67.98 -0.26 0.67 16 16 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 17 C 0.11 0.88 3.49 -26.55 -0.09 0.79 16 18 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 19 O -0.55 -6.00 11.76 -35.23 -0.41 -6.41 16 20 C -0.15 -0.76 5.51 -26.69 -0.15 -0.91 16 21 C -0.14 -0.86 5.94 -26.45 -0.16 -1.01 16 22 C 0.15 1.24 7.01 -3.70 -0.03 1.21 16 23 N -0.62 -7.26 2.96 -171.85 -0.51 -7.77 16 24 C 0.71 11.59 8.35 -88.56 -0.74 10.85 16 25 O -0.54 -10.60 17.27 5.33 0.09 -10.50 16 26 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 27 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 28 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 32 H 0.09 1.63 7.84 -51.93 -0.41 1.23 16 33 H 0.38 2.52 9.09 45.56 0.41 2.94 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.67 7.60 -51.93 -0.39 0.27 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.89 8.01 -51.92 -0.42 0.47 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -37.95 322.76 -7.24 -45.19 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.96 Total: -1.83 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.21 Total: 4.72 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.05 Total: -45.71 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.22 Total: -25.02 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.95 -7.24 -45.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320765135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.475 kcal (2) G-P(sol) polarization free energy of solvation -37.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds