Wall clock time and date at job start Tue Mar 31 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00393 * 179.97438 * 11 10 9 13 13 O 1.21353 * 120.00106 * 0.02562 * 12 11 10 14 14 C 1.49448 * 120.00494 * 179.97438 * 12 11 10 15 15 O 1.21353 * 119.99874 * 0.02562 * 14 12 11 16 16 N 1.34770 * 120.00494 * 180.02562 * 14 12 11 17 17 C 1.46502 * 120.00583 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47590 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.70474 * 60.58095 * 18 17 16 20 20 C 1.53504 * 109.71082 * 181.21179 * 18 17 16 21 21 C 1.53230 * 108.17199 * 182.07199 * 20 18 17 22 22 C 1.50444 * 109.44436 * 313.18564 * 21 20 18 23 23 C 1.30687 * 122.49329 * 17.48853 * 22 21 20 24 24 O 1.35138 * 123.34579 * 359.53596 * 23 22 21 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 0.97000 * 120.00040 * 359.97438 * 11 10 9 31 31 H 0.97000 * 120.00158 * 0.02562 * 16 14 12 32 32 H 1.09004 * 109.47036 * 300.00574 * 17 16 14 33 33 H 1.09000 * 109.46652 * 59.99744 * 17 16 14 34 34 H 1.09006 * 109.72221 * 301.75314 * 20 18 17 35 35 H 1.09001 * 109.72356 * 62.41748 * 20 18 17 36 36 H 1.08997 * 109.47713 * 193.19374 * 21 20 18 37 37 H 1.08997 * 109.48436 * 73.18135 * 21 20 18 38 38 H 1.08000 * 118.75404 * 197.50258 * 22 21 20 39 39 H 1.08000 * 118.32963 * 179.57125 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 2.1863 -6.0980 -0.0226 13 8 3.3999 -6.0981 -0.0220 14 6 1.4391 -7.3922 -0.0284 15 8 0.2256 -7.3922 -0.0285 16 7 2.1129 -8.5594 -0.0337 17 6 1.3804 -9.8282 -0.0389 18 6 2.3745 -10.9911 -0.0436 19 1 2.9965 -10.9466 0.8505 20 6 1.6128 -12.3233 -0.0796 21 6 2.6377 -13.4613 -0.0307 22 6 3.7420 -13.1833 -1.0138 23 6 3.9525 -11.9952 -1.5157 24 8 3.1998 -10.9154 -1.2095 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.5426 -4.9308 -0.0168 31 1 3.0829 -8.5595 -0.0333 32 1 0.7539 -9.8897 0.8510 33 1 0.7534 -9.8820 -0.9289 34 1 0.9474 -12.3900 0.7812 35 1 1.0325 -12.3905 -0.9999 36 1 2.1497 -14.4012 -0.2886 37 1 3.0547 -13.5321 0.9738 38 1 4.3851 -13.9965 -1.3164 39 1 4.7693 -11.8699 -2.2111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322609461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:46 Heat of formation + Delta-G solvation = -108.588173 kcal Electronic energy + Delta-G solvation = -21123.618403 eV Core-core repulsion = 17645.409362 eV Total energy + Delta-G solvation = -3478.209041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77545 -40.15041 -38.24677 -35.64237 -34.82260 -34.36171 -32.85967 -32.05904 -29.80887 -28.11781 -25.67609 -24.50901 -23.59437 -22.53667 -21.01350 -20.22887 -19.37926 -18.40901 -17.17789 -16.87194 -16.49406 -16.22117 -15.85482 -15.57615 -14.94781 -14.60017 -14.53805 -14.40625 -14.30328 -13.63187 -13.41409 -13.37111 -13.06278 -12.81504 -12.49551 -12.31642 -11.52540 -11.37522 -11.22908 -11.21999 -11.05386 -10.95506 -10.65964 -10.38571 -9.78604 -9.43626 -9.38197 -9.18425 -8.81228 -8.67736 -8.40780 -6.09405 -4.12953 1.63061 1.90497 2.50675 2.94164 3.29680 3.35895 3.39649 3.45309 3.86170 4.11995 4.27440 4.41189 4.44595 4.60896 4.74335 4.80962 4.91033 5.09172 5.16814 5.24782 5.27456 5.40651 5.43164 5.64074 5.86927 6.05966 6.12945 6.19814 6.25496 6.61511 6.71083 7.05716 7.17598 7.47961 7.59069 7.67989 7.88104 7.93924 8.22545 8.36029 8.92664 9.51825 11.02080 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.052610 B = 0.002398 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.093211 B =11674.651751 C =12068.048656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.686 5.686 12 C 0.498 3.502 13 O -0.532 6.532 14 C 0.509 3.491 15 O -0.522 6.522 16 N -0.702 5.702 17 C 0.127 3.873 18 C 0.076 3.924 19 H 0.082 0.918 20 C -0.152 4.152 21 C -0.081 4.081 22 C -0.286 4.286 23 C 0.059 3.941 24 O -0.317 6.317 25 H 0.263 0.737 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.410 0.590 31 H 0.417 0.583 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.256 -27.133 -0.008 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.277 3.723 13 O -0.410 6.410 14 C 0.290 3.710 15 O -0.397 6.397 16 N -0.356 5.356 17 C 0.003 3.997 18 C 0.020 3.980 19 H 0.100 0.900 20 C -0.190 4.190 21 C -0.118 4.118 22 C -0.306 4.306 23 C -0.004 4.004 24 O -0.231 6.231 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.246 0.754 31 H 0.253 0.747 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.065 -26.790 -0.101 27.097 hybrid contribution 0.444 0.580 0.068 0.734 sum 4.509 -26.209 -0.033 26.595 Atomic orbital electron populations 1.69963 1.06091 1.26935 1.50084 1.25010 0.94912 0.99458 0.94960 0.86490 0.79787 0.82937 0.78193 1.20551 1.21170 1.19731 1.21017 0.93224 0.90243 1.51678 0.92159 1.19358 0.94200 0.90871 0.98252 1.21933 0.96269 0.80749 1.01344 1.46223 1.11777 1.05769 1.69923 1.19932 0.87706 0.85206 0.79434 1.90735 1.13216 1.87512 1.49575 1.20459 0.87698 0.85554 0.77309 1.90759 1.13425 1.87681 1.47837 1.45615 1.11708 1.04523 1.73760 1.21513 0.93585 0.80547 1.04041 1.22776 0.92056 0.95224 0.87974 0.90012 1.22206 0.98617 0.93933 1.04284 1.20325 0.94452 0.98391 0.98589 1.22525 1.03866 0.97476 1.06713 1.22053 0.93888 0.86004 0.98460 1.85990 1.55133 1.37810 1.44135 0.92783 0.95652 0.95651 0.91862 0.91855 0.75388 0.74673 0.88948 0.89930 0.89594 0.90097 0.90398 0.91072 0.86149 0.82467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C 0.12 2.50 5.61 -4.05 -0.02 2.48 16 11 N -0.69 -12.64 5.55 -60.74 -0.34 -12.97 16 12 C 0.50 8.70 7.89 -11.59 -0.09 8.61 16 13 O -0.53 -10.24 16.48 5.49 0.09 -10.15 16 14 C 0.51 7.70 7.89 -11.59 -0.09 7.61 16 15 O -0.52 -8.80 16.48 5.49 0.09 -8.71 16 16 N -0.70 -8.29 5.45 -60.73 -0.33 -8.62 16 17 C 0.13 1.15 5.39 -4.04 -0.02 1.13 16 18 C 0.08 0.58 2.94 -26.47 -0.08 0.50 16 19 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 20 C -0.15 -0.91 5.54 -26.35 -0.15 -1.05 16 21 C -0.08 -0.47 6.23 -27.89 -0.17 -0.64 16 22 C -0.29 -1.91 9.97 -36.06 -0.36 -2.27 16 23 C 0.06 0.44 10.88 29.10 0.32 0.76 16 24 O -0.32 -2.95 9.81 -17.11 -0.17 -3.11 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.41 7.19 7.94 -40.82 -0.32 6.87 16 31 H 0.42 4.72 7.83 -40.82 -0.32 4.40 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -31.99 337.40 -6.76 -38.75 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.68 Total: 4.81 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.22 Total: 4.05 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.07 Total: -47.04 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.01 Total: -21.97 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.99 -6.76 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322609461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.838 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds