Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34330 * 126.44286 * 2 1 4 4 N 1.34484 * 107.66836 * 179.73187 * 3 2 1 5 5 C 1.30250 * 108.70027 * 0.27078 * 4 3 2 6 6 C 1.50702 * 125.62048 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46887 * 90.02204 * 6 5 4 8 8 C 1.42910 * 113.99486 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46871 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00071 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99884 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99863 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47052 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47063 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.46848 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00276 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99938 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99873 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99604 * 359.97438 * 17 15 14 20 20 H 1.48492 * 109.47086 * 90.00364 * 19 17 15 21 21 H 1.48502 * 109.46664 * 210.00276 * 19 17 15 22 22 H 1.48495 * 109.47189 * 330.00053 * 19 17 15 23 23 O 1.33972 * 108.76227 * 359.97438 * 5 4 3 24 24 H 1.09006 * 109.46964 * 89.99849 * 1 2 3 25 25 H 1.09001 * 109.47520 * 209.99424 * 1 2 3 26 26 H 1.09003 * 109.47512 * 329.99686 * 1 2 3 27 27 H 1.08002 * 126.16884 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.47129 * 210.02172 * 6 5 4 29 29 H 1.08997 * 109.46764 * 330.01876 * 6 5 4 30 30 H 1.08993 * 109.46934 * 299.99659 * 8 7 6 31 31 H 1.08996 * 109.47040 * 60.00164 * 8 7 6 32 32 H 0.97000 * 120.00261 * 0.02562 * 11 9 8 33 33 H 1.09000 * 109.46975 * 300.00086 * 12 11 9 34 34 H 1.08996 * 109.47000 * 60.00541 * 12 11 9 35 35 H 1.09005 * 109.46900 * 300.00197 * 13 12 11 36 36 H 1.09001 * 109.46924 * 59.99753 * 13 12 11 37 37 H 1.08996 * 109.46973 * 300.00258 * 14 13 12 38 38 H 1.09005 * 109.46749 * 60.00154 * 14 13 12 39 39 H 0.96999 * 119.99521 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0060 5 6 3.5765 -0.6547 0.0038 6 6 4.8004 -1.5340 0.0082 7 8 5.1804 -1.8146 1.3569 8 6 6.3372 -2.6456 1.4739 9 6 6.6457 -2.8747 2.9311 10 8 5.9444 -2.3753 3.7853 11 7 7.7009 -3.6347 3.2850 12 6 8.0012 -3.8570 4.7015 13 6 9.2396 -4.7468 4.8268 14 6 9.5536 -4.9785 6.3062 15 6 10.7730 -5.8553 6.4296 16 1 11.2741 -6.2114 5.5416 17 6 11.2488 -6.2031 7.6761 18 7 12.3133 -6.9679 7.7837 19 14 10.3824 -5.5866 9.2119 20 1 9.3354 -6.5598 9.6139 21 1 11.3695 -5.4389 10.3115 22 1 9.7537 -4.2709 8.9312 23 8 2.3074 -1.0840 -0.0031 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.9821 2.1113 0.0004 28 1 4.5788 -2.4678 -0.5087 29 1 5.6173 -1.0221 -0.5005 30 1 6.1478 -3.6023 0.9874 31 1 7.1857 -2.1564 0.9957 32 1 8.2620 -4.0339 2.6018 33 1 8.1913 -2.8999 5.1872 34 1 7.1526 -4.3454 5.1805 35 1 9.0499 -5.7040 4.3410 36 1 10.0881 -4.2581 4.3478 37 1 9.7434 -4.0212 6.7916 38 1 8.7052 -5.4670 6.7855 39 1 12.6478 -7.2128 8.6607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325874382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -66.959087 kcal Electronic energy + Delta-G solvation = -20508.451422 eV Core-core repulsion = 17032.047554 eV Total energy + Delta-G solvation = -3476.403868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.68695 -39.78120 -37.97903 -35.51781 -35.08707 -33.36157 -33.15415 -31.59697 -30.10182 -28.30560 -26.52270 -25.44680 -22.80935 -22.68911 -21.47716 -20.86006 -20.04063 -17.88510 -17.60453 -17.02717 -16.77038 -16.59122 -16.42898 -15.41899 -15.29499 -15.00325 -14.70131 -14.18384 -13.96079 -13.79129 -13.56787 -13.33438 -12.84746 -12.72017 -12.64479 -12.32751 -11.98564 -11.90775 -11.66457 -11.10542 -10.90651 -10.89477 -10.25200 -10.21497 -9.98867 -9.79261 -9.59013 -9.24497 -9.10797 -8.92706 -8.56656 -6.07593 -4.06409 0.93493 2.03876 2.29827 2.62027 2.87445 3.30888 3.38579 3.43037 3.52546 4.04713 4.30423 4.43588 4.51472 4.57023 4.64122 4.73855 4.81248 4.87511 4.91450 5.00931 5.12863 5.26561 5.45134 5.51979 5.62922 5.65353 5.90065 5.98556 6.29299 6.41782 6.44253 6.67463 6.76215 7.20959 7.34410 7.34990 7.55075 7.74882 8.25743 8.48709 8.96014 9.54686 11.05540 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.044537 B = 0.002110 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.540345 B =13269.923719 C =13619.044034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.357 6.357 8 C 0.045 3.955 9 C 0.508 3.492 10 O -0.522 6.522 11 N -0.724 5.724 12 C 0.115 3.885 13 C -0.113 4.113 14 C -0.012 4.012 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 O -0.194 6.194 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.186 0.814 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.401 0.599 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.563 12.260 -21.022 31.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.189 5.189 5 C -0.019 4.019 6 C 0.083 3.917 7 O -0.274 6.274 8 C -0.034 4.034 9 C 0.293 3.707 10 O -0.397 6.397 11 N -0.377 5.377 12 C -0.007 4.007 13 C -0.151 4.151 14 C -0.050 4.050 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 O -0.081 6.081 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.203 0.797 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.511 12.909 -20.079 31.473 hybrid contribution -0.517 -0.404 0.371 0.754 sum -21.028 12.506 -19.709 31.417 Atomic orbital electron populations 1.20317 0.83711 1.04733 1.03882 1.23588 0.95213 0.84525 1.05927 1.23137 0.87575 1.00547 1.07159 1.70415 1.23333 1.09054 1.16057 1.25515 0.83891 0.89937 1.02539 1.20484 0.89123 0.96444 0.85608 1.88086 1.45723 1.69824 1.23783 1.22296 0.89430 0.95959 0.95763 1.20098 0.81207 0.79329 0.90104 1.90751 1.48636 1.48445 1.51905 1.46029 1.29859 1.51846 1.09943 1.21685 0.99044 1.00525 0.79449 1.21713 0.94495 0.98006 1.00878 1.19510 0.97215 0.97176 0.91080 1.21088 1.10658 1.30175 0.94135 0.90994 1.25033 0.94738 0.94563 0.99155 1.69911 1.23423 1.36609 1.24192 0.86775 0.79564 0.80123 0.82848 1.20239 1.21352 1.18885 1.84389 1.17706 1.36623 1.69356 0.89636 0.90080 0.88720 0.79676 0.89835 0.88339 0.89631 0.89513 0.76539 0.91634 0.91656 0.92041 0.92000 0.96259 0.96713 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.00 0.38 0.07 16 2 C -0.04 -0.35 7.39 -35.69 -0.26 -0.62 16 3 C -0.04 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.46 -5.71 11.29 -11.10 -0.13 -5.84 16 5 C 0.19 2.16 7.97 -12.95 -0.10 2.06 16 6 C 0.16 1.39 6.56 36.01 0.24 1.62 16 7 O -0.36 -4.41 9.86 -55.14 -0.54 -4.95 16 8 C 0.05 0.42 6.42 36.01 0.23 0.65 16 9 C 0.51 7.19 7.91 -10.99 -0.09 7.10 16 10 O -0.52 -10.16 16.50 -14.35 -0.24 -10.40 16 11 N -0.72 -9.32 5.56 -60.29 -0.33 -9.66 16 12 C 0.12 1.88 5.67 -4.04 -0.02 1.85 16 13 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 14 C -0.01 -0.27 4.04 -27.89 -0.11 -0.39 16 15 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 19 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 23 O -0.19 -2.19 10.78 5.35 0.06 -2.13 16 24 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 3.78 8.47 -40.82 -0.35 3.43 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -37.97 341.92 -6.23 -44.19 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.77 Total: -3.00 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.53 Total: -3.60 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.31 Total: -42.34 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.72 Total: -17.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.97 -6.23 -44.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325874382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.766 kcal (2) G-P(sol) polarization free energy of solvation -37.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds