Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47127 * 243.39076 * 3 2 1 5 5 C 1.37099 * 119.99963 * 264.20762 * 4 3 2 6 6 H 1.08001 * 119.99764 * 198.11789 * 5 4 3 7 7 C 1.38949 * 120.00029 * 18.11600 * 5 4 3 8 8 N 1.31403 * 119.99894 * 18.73229 * 7 5 4 9 9 Si 1.86796 * 119.99774 * 198.72840 * 7 5 4 10 10 H 1.48498 * 109.47149 * 85.59216 * 9 7 5 11 11 H 1.48497 * 109.47119 * 205.58923 * 9 7 5 12 12 H 1.48494 * 109.47457 * 325.59215 * 9 7 5 13 13 C 1.34773 * 119.99815 * 84.20803 * 4 3 2 14 14 O 1.21296 * 119.99872 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00300 * 0.02562 * 13 4 3 16 16 C 1.53002 * 109.47231 * 180.02562 * 15 13 4 17 17 O 1.42906 * 109.46725 * 180.02562 * 16 15 13 18 18 C 1.42899 * 113.99306 * 179.97438 * 17 16 15 19 19 C 1.53181 * 109.54231 * 269.54779 * 18 17 16 20 20 C 1.53096 * 109.16444 * 183.15604 * 19 18 17 21 21 O 1.42901 * 109.41246 * 57.60731 * 20 19 18 22 22 C 1.42894 * 114.10160 * 298.84292 * 21 20 19 23 23 C 1.53096 * 109.41699 * 61.16158 * 22 21 20 24 24 H 1.09005 * 109.47287 * 123.39269 * 3 2 1 25 25 H 1.08998 * 109.47610 * 3.39467 * 3 2 1 26 26 H 0.97003 * 120.00035 * 180.02562 * 8 7 5 27 27 H 1.08991 * 109.47204 * 59.99605 * 15 13 4 28 28 H 1.09008 * 109.46699 * 299.99653 * 15 13 4 29 29 H 1.08999 * 109.47477 * 59.99782 * 16 15 13 30 30 H 1.09008 * 109.46708 * 299.99295 * 16 15 13 31 31 H 1.08994 * 109.62239 * 29.77524 * 18 17 16 32 32 H 1.08997 * 109.52175 * 303.06288 * 19 18 17 33 33 H 1.08999 * 109.51992 * 63.25039 * 19 18 17 34 34 H 1.08997 * 109.47728 * 297.62673 * 20 19 18 35 35 H 1.08994 * 109.47877 * 177.59229 * 20 19 18 36 36 H 1.08999 * 109.48020 * 301.17532 * 22 21 20 37 37 H 1.09007 * 109.48896 * 181.14397 * 22 21 20 38 38 H 1.09001 * 109.52279 * 182.48730 * 23 22 21 39 39 H 1.08994 * 109.52564 * 62.29457 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0960 0.6195 1.2349 5 6 3.4369 1.9474 1.2480 6 1 4.0583 2.3376 2.0404 7 6 2.9828 2.7911 0.2417 8 7 1.9569 2.4373 -0.4993 9 14 3.8307 4.4284 -0.0577 10 1 4.9905 4.2271 -0.9629 11 1 2.8728 5.3748 -0.6836 12 1 4.3030 4.9851 1.2355 13 6 3.2099 -0.1165 2.3582 14 8 3.6144 0.3958 3.3805 15 6 2.8357 -1.5763 2.3437 16 6 3.0561 -2.1731 3.7352 17 8 2.7018 -3.5574 3.7212 18 6 2.8721 -4.2135 4.9792 19 6 4.2841 -4.8015 5.0635 20 6 4.4311 -5.5692 6.3799 21 8 3.4318 -6.5883 6.4495 22 6 2.0913 -6.0939 6.4229 23 6 1.8502 -5.3474 5.1082 24 1 2.9711 0.5664 -0.8580 25 1 2.9718 -1.0250 -0.0608 26 1 1.6402 3.0262 -1.2021 27 1 3.4567 -2.1033 1.6194 28 1 1.7866 -1.6797 2.0664 29 1 2.4348 -1.6459 4.4592 30 1 4.1051 -2.0696 4.0129 31 1 2.7263 -3.4977 5.7881 32 1 4.4466 -5.4800 4.2261 33 1 5.0169 -3.9955 5.0280 34 1 4.3084 -4.8820 7.2170 35 1 5.4197 -6.0257 6.4259 36 1 1.9380 -5.4137 7.2606 37 1 1.3943 -6.9285 6.5000 38 1 0.8426 -4.9318 5.1048 39 1 1.9637 -6.0369 4.2717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340110972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = -98.383876 kcal Electronic energy + Delta-G solvation = -22035.292273 eV Core-core repulsion = 18557.525724 eV Total energy + Delta-G solvation = -3477.766549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.75169 -38.95538 -37.39845 -35.82534 -34.38944 -32.93409 -31.94575 -31.34122 -30.44310 -27.46739 -25.43699 -24.40438 -23.82516 -22.70577 -20.55618 -19.05038 -17.94334 -17.27642 -16.50603 -16.37168 -16.25304 -15.77634 -15.39560 -15.03130 -14.61219 -14.41150 -14.21388 -13.92213 -13.22563 -13.21205 -13.01301 -12.68209 -12.51874 -12.10558 -11.84760 -11.59983 -11.53870 -11.45624 -11.31247 -11.20693 -10.91607 -10.79213 -10.56649 -10.51601 -10.43420 -10.30830 -9.89345 -9.38457 -9.30356 -8.68396 -8.09635 -6.53407 -4.05514 3.07778 3.19226 3.22805 3.43721 3.56556 3.67309 3.80624 3.97754 4.10964 4.56998 4.62044 4.75774 4.82142 4.87899 4.95498 4.98872 5.18921 5.21072 5.29320 5.37553 5.39248 5.43318 5.46252 5.64080 5.68670 5.82179 5.87492 5.95214 6.00256 6.10188 6.21150 6.27491 6.52218 6.93306 7.33455 7.42960 7.84515 8.23125 8.73353 8.94744 9.14527 9.67240 10.52321 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.003379 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.596965 B = 8283.916011 C = 8894.416609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.247 3.753 3 C 0.220 3.780 4 N -0.441 5.441 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.031 3.969 8 N -0.880 5.880 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.458 3.542 14 O -0.577 6.577 15 C -0.134 4.134 16 C 0.083 3.917 17 O -0.384 6.384 18 C 0.090 3.910 19 C -0.179 4.179 20 C 0.064 3.936 21 O -0.384 6.384 22 C 0.064 3.936 23 C -0.154 4.154 24 H 0.130 0.870 25 H 0.085 0.915 26 H 0.274 0.726 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 -13.968 6.789 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.071 4.071 3 C 0.093 3.907 4 N -0.161 5.161 5 C -0.441 4.441 6 H 0.126 0.874 7 C -0.172 4.172 8 N -0.519 5.519 9 Si 0.757 3.243 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.247 3.753 14 O -0.461 6.461 15 C -0.174 4.174 16 C 0.006 3.994 17 O -0.303 6.303 18 C 0.032 3.968 19 C -0.217 4.217 20 C -0.013 4.013 21 O -0.303 6.303 22 C -0.013 4.013 23 C -0.192 4.192 24 H 0.148 0.852 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.678 -13.882 6.983 15.768 hybrid contribution 0.614 1.490 -0.286 1.636 sum 3.292 -12.392 6.697 14.465 Atomic orbital electron populations 1.80897 1.13621 1.12146 1.08712 1.29285 0.95353 0.90022 0.92455 1.18786 0.81625 0.98067 0.92248 1.43609 1.56396 1.09811 1.06295 1.19747 1.29717 0.82867 1.11722 0.87354 1.25302 0.94986 0.99904 0.97017 1.69824 1.21178 1.39000 1.21870 0.85855 0.78804 0.80707 0.78901 1.20045 1.21073 1.19404 1.19903 0.83976 0.87786 0.83627 1.90545 1.50617 1.73678 1.31239 1.21451 1.03529 0.94765 0.97667 1.22182 0.99943 0.80031 0.97243 1.87862 1.87650 1.23330 1.31459 1.22011 0.94027 0.93750 0.87015 1.22742 0.98312 1.01229 0.99449 1.22567 0.92262 0.90541 0.95960 1.87921 1.14773 1.33131 1.94478 1.22580 0.84066 0.98827 0.95803 1.22302 0.99772 0.97736 0.99362 0.85212 0.89769 0.91532 0.89181 0.89574 0.92690 0.92567 0.92060 0.90081 0.90384 0.93067 0.88562 0.93036 0.88381 0.90134 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.28 18.54 42.15 0.78 -10.50 16 2 C 0.25 5.45 12.95 -20.76 -0.27 5.18 16 3 C 0.22 4.32 4.91 -6.83 -0.03 4.28 16 4 N -0.44 -10.15 2.60 -117.93 -0.31 -10.45 16 5 C -0.31 -7.97 9.33 -14.93 -0.14 -8.11 16 6 H 0.11 2.90 7.37 -52.49 -0.39 2.51 16 7 C 0.03 0.77 4.94 -17.47 -0.09 0.68 16 8 N -0.88 -21.94 9.33 55.50 0.52 -21.42 16 9 Si 0.93 19.44 29.59 -169.99 -5.03 14.41 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.46 10.20 7.56 -10.99 -0.08 10.11 16 14 O -0.58 -14.70 15.64 5.54 0.09 -14.61 16 15 C -0.13 -2.33 4.67 -27.88 -0.13 -2.46 16 16 C 0.08 1.34 5.04 37.16 0.19 1.53 16 17 O -0.38 -5.69 10.00 -35.23 -0.35 -6.05 16 18 C 0.09 1.08 2.70 -26.54 -0.07 1.01 16 19 C -0.18 -1.90 5.76 -26.59 -0.15 -2.05 16 20 C 0.06 0.59 6.84 37.21 0.25 0.84 16 21 O -0.38 -4.12 10.76 -35.23 -0.38 -4.50 16 22 C 0.06 0.57 6.84 37.21 0.25 0.83 16 23 C -0.15 -1.59 5.79 -26.59 -0.15 -1.74 16 24 H 0.13 2.60 6.40 -51.93 -0.33 2.27 16 25 H 0.08 1.26 6.68 -51.93 -0.35 0.91 16 26 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.09 1.34 7.42 -51.93 -0.39 0.95 16 28 H 0.09 1.52 7.51 -51.92 -0.39 1.13 16 29 H 0.05 0.94 8.05 -51.93 -0.42 0.53 16 30 H 0.06 0.90 7.95 -51.92 -0.41 0.49 16 31 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.81 7.99 -51.93 -0.42 0.40 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -30.72 327.59 -5.76 -36.47 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.59 Total: 1.60 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.42 Total: 10.10 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.99 Total: -42.37 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.64 Total: -25.15 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.72 -5.76 -36.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340110972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.909 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds