Wall clock time and date at job start Tue Mar 31 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30875 * 125.40418 * 264.69253 * 4 2 1 6 6 C 1.33284 * 109.70037 * 179.82340 * 5 4 2 7 7 C 1.36752 * 107.77586 * 0.43549 * 6 5 4 8 8 C 1.46585 * 126.85809 * 179.72095 * 7 6 5 9 9 O 1.21602 * 119.99652 * 0.02562 * 8 7 6 10 10 O 1.34875 * 119.99923 * 180.02562 * 8 7 6 11 11 C 1.45207 * 116.99732 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46783 * 180.02562 * 11 10 8 13 13 O 1.42905 * 109.47222 * 65.00318 * 12 11 10 14 14 C 1.42895 * 113.99942 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47331 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99749 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00244 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47017 * 60.00458 * 19 17 15 21 21 H 1.48501 * 109.47079 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47157 * 300.00270 * 19 17 15 23 23 N 1.34469 * 125.41098 * 84.99632 * 4 2 1 24 24 H 0.97007 * 126.47088 * 359.96613 * 23 4 2 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.08001 * 126.10921 * 180.20812 * 6 5 4 33 33 H 1.08997 * 109.47009 * 300.00020 * 11 10 8 34 34 H 1.08999 * 109.46703 * 60.00371 * 11 10 8 35 35 H 1.08999 * 109.46609 * 185.00143 * 12 11 10 36 36 H 1.09004 * 109.47192 * 304.99944 * 12 11 10 37 37 H 1.09007 * 109.46918 * 300.00018 * 14 13 12 38 38 H 1.08999 * 109.47367 * 59.99578 * 14 13 12 39 39 H 0.96998 * 120.00402 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 2.3781 -1.9712 -1.2902 6 6 2.7708 -2.2713 -2.5280 7 6 2.6750 -1.1354 -3.2834 8 6 3.0079 -0.9934 -4.7039 9 8 3.4171 -1.9515 -5.3311 10 8 2.8604 0.1998 -5.3151 11 6 3.2099 0.2670 -6.7228 12 6 2.9793 1.6890 -7.2382 13 8 3.8787 2.5851 -6.5822 14 6 3.7457 3.9469 -6.9941 15 6 4.7370 4.7980 -6.2432 16 1 5.4018 4.3443 -5.5231 17 6 4.7953 6.1558 -6.4754 18 7 3.9854 6.7084 -7.3520 19 14 6.0237 7.2108 -5.5441 20 1 7.4015 6.7380 -5.8329 21 1 5.8856 8.6260 -5.9722 22 1 5.7602 7.1071 -4.0863 23 7 2.2020 -0.1480 -2.4402 24 1 2.0252 0.7762 -2.6763 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 3.1081 -3.2380 -2.8719 33 1 4.2591 0.0006 -6.8498 34 1 2.5875 -0.4291 -7.2852 35 1 3.1563 1.7189 -8.3133 36 1 1.9520 1.9886 -7.0306 37 1 3.9388 4.0234 -8.0642 38 1 2.7343 4.2936 -6.7818 39 1 4.0267 7.6635 -7.5156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343902069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:39 Heat of formation + Delta-G solvation = -95.040271 kcal Electronic energy + Delta-G solvation = -21548.847835 eV Core-core repulsion = 18071.226275 eV Total energy + Delta-G solvation = -3477.621560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50734 -40.04972 -37.14268 -36.12191 -35.69941 -32.98807 -32.80239 -30.44462 -29.39302 -27.54444 -27.01903 -24.68856 -22.89691 -22.43077 -21.85612 -20.95734 -20.30318 -18.72485 -17.06549 -16.66208 -16.50891 -15.88288 -15.72859 -15.28357 -15.07904 -14.65090 -14.45241 -14.37367 -13.92295 -13.70503 -13.33472 -12.93237 -12.73778 -12.55175 -12.04994 -11.89790 -11.58003 -11.52685 -11.41260 -11.04316 -10.95321 -10.85396 -10.76664 -10.49837 -10.39656 -10.37054 -10.11819 -9.21990 -8.95591 -8.79589 -8.29403 -6.18611 -4.20969 0.96292 2.46290 2.51344 2.83842 3.02857 3.26635 3.29841 3.33429 3.89755 4.25569 4.43487 4.61559 4.69021 4.71036 4.85981 5.04238 5.14255 5.17908 5.19165 5.23305 5.37663 5.42767 5.46307 5.51585 5.69792 5.77539 5.84455 5.85552 5.86169 5.97652 6.27654 6.40588 6.96882 6.98782 7.31304 7.60191 7.70324 7.73870 8.04816 8.43820 8.91068 9.44155 10.92803 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003908 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.810455 B = 7163.956970 C = 8604.564798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 C -0.158 4.158 4 C 0.254 3.746 5 N -0.496 5.496 6 C 0.080 3.920 7 C -0.072 4.072 8 C 0.542 3.458 9 O -0.502 6.502 10 O -0.345 6.345 11 C 0.077 3.923 12 C 0.061 3.939 13 O -0.392 6.392 14 C 0.195 3.805 15 C -0.518 4.518 16 H 0.066 0.934 17 C 0.058 3.942 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.534 5.534 24 H 0.432 0.568 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.187 0.813 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 -13.250 11.482 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.216 4.216 4 C -0.010 4.010 5 N -0.215 5.215 6 C -0.075 4.075 7 C -0.187 4.187 8 C 0.386 3.614 9 O -0.391 6.391 10 O -0.262 6.262 11 C 0.004 3.996 12 C -0.017 4.017 13 O -0.312 6.312 14 C 0.121 3.879 15 C -0.556 4.556 16 H 0.084 0.916 17 C -0.143 4.143 18 N -0.537 5.537 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.200 1.200 23 N -0.137 5.137 24 H 0.273 0.727 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.204 0.796 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.419 -13.923 11.913 19.769 hybrid contribution 0.424 1.709 -0.922 1.987 sum -6.995 -12.214 10.990 17.858 Atomic orbital electron populations 1.21868 0.92950 1.02914 1.02690 1.19775 0.96439 0.95293 0.92050 1.21967 1.02159 0.94260 1.03241 1.23449 1.00109 0.90040 0.87430 1.70234 1.18598 1.11975 1.20704 1.22711 0.99017 0.97640 0.88098 1.20135 1.16759 0.91552 0.90241 1.19553 0.74788 0.81534 0.85556 1.90889 1.43204 1.39840 1.65131 1.86648 1.78411 1.33288 1.27807 1.23273 1.01968 0.97753 0.76634 1.22339 0.95010 0.88221 0.96091 1.87918 1.57878 1.20155 1.65219 1.20237 0.96878 0.75742 0.95071 1.20997 1.19283 0.91805 1.23509 0.91606 1.24938 0.96330 0.97602 0.95479 1.69944 1.37804 1.12040 1.33920 0.86389 0.81272 0.78786 0.80004 1.19948 1.21063 1.20015 1.43252 1.48229 1.13072 1.09190 0.72732 0.91086 0.91699 0.92421 0.87414 0.90635 0.91619 0.92241 0.79562 0.90166 0.90103 0.91673 0.93242 0.97545 0.97546 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.18 37.16 0.34 -0.63 16 2 C -0.02 -0.12 3.39 -91.77 -0.31 -0.43 16 3 C -0.16 -1.14 8.93 37.16 0.33 -0.80 16 4 C 0.25 2.81 6.84 -155.62 -1.07 1.74 16 5 N -0.50 -6.36 11.20 -10.57 -0.12 -6.48 16 6 C 0.08 1.03 11.66 -17.46 -0.20 0.83 16 7 C -0.07 -0.99 7.13 -82.17 -0.59 -1.57 16 8 C 0.54 8.39 7.93 34.10 0.27 8.66 16 9 O -0.50 -8.47 16.70 -19.34 -0.32 -8.80 16 10 O -0.35 -5.65 10.20 -43.76 -0.45 -6.09 16 11 C 0.08 1.19 5.86 37.16 0.22 1.41 16 12 C 0.06 1.08 6.33 37.16 0.24 1.31 16 13 O -0.39 -9.25 10.30 -38.80 -0.40 -9.65 16 14 C 0.19 5.21 5.69 36.01 0.20 5.42 16 15 C -0.52 -15.00 9.43 -34.44 -0.32 -15.33 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.53 -6.25 5.94 -7.04 -0.04 -6.29 16 24 H 0.43 4.55 8.12 -40.82 -0.33 4.22 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.43 7.40 -51.93 -0.38 0.05 16 32 H 0.19 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -33.35 343.71 -7.18 -40.52 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.76 Total: -1.36 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.99 Total: 2.15 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.58 Total: -38.38 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.17 Total: -24.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.35 -7.18 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343902069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.517 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds