Wall clock time and date at job start Tue Mar 31 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30875 * 125.40418 * 264.69253 * 4 2 1 6 6 C 1.33284 * 109.70037 * 179.82340 * 5 4 2 7 7 C 1.36752 * 107.77586 * 0.43549 * 6 5 4 8 8 C 1.46585 * 126.85809 * 179.72095 * 7 6 5 9 9 O 1.21602 * 119.99652 * 0.02562 * 8 7 6 10 10 O 1.34875 * 119.99923 * 180.02562 * 8 7 6 11 11 C 1.45207 * 116.99732 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46783 * 180.02562 * 11 10 8 13 13 O 1.42905 * 109.47222 * 65.00318 * 12 11 10 14 14 C 1.42895 * 113.99942 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47331 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99749 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00244 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47017 * 60.00458 * 19 17 15 21 21 H 1.48501 * 109.47079 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47157 * 300.00270 * 19 17 15 23 23 N 1.34469 * 125.41098 * 84.99632 * 4 2 1 24 24 H 0.97007 * 126.47088 * 359.96613 * 23 4 2 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.08001 * 126.10921 * 180.20812 * 6 5 4 33 33 H 1.08997 * 109.47009 * 300.00020 * 11 10 8 34 34 H 1.08999 * 109.46703 * 60.00371 * 11 10 8 35 35 H 1.08999 * 109.46609 * 185.00143 * 12 11 10 36 36 H 1.09004 * 109.47192 * 304.99944 * 12 11 10 37 37 H 1.09007 * 109.46918 * 300.00018 * 14 13 12 38 38 H 1.08999 * 109.47367 * 59.99578 * 14 13 12 39 39 H 0.96998 * 120.00402 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 2.3781 -1.9712 -1.2902 6 6 2.7708 -2.2713 -2.5280 7 6 2.6750 -1.1354 -3.2834 8 6 3.0079 -0.9934 -4.7039 9 8 3.4171 -1.9515 -5.3311 10 8 2.8604 0.1998 -5.3151 11 6 3.2099 0.2670 -6.7228 12 6 2.9793 1.6890 -7.2382 13 8 3.8787 2.5851 -6.5822 14 6 3.7457 3.9469 -6.9941 15 6 4.7370 4.7980 -6.2432 16 1 5.4018 4.3443 -5.5231 17 6 4.7953 6.1558 -6.4754 18 7 3.9854 6.7084 -7.3520 19 14 6.0237 7.2108 -5.5441 20 1 7.4015 6.7380 -5.8329 21 1 5.8856 8.6260 -5.9722 22 1 5.7602 7.1071 -4.0863 23 7 2.2020 -0.1480 -2.4402 24 1 2.0252 0.7762 -2.6763 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 3.1081 -3.2380 -2.8719 33 1 4.2591 0.0006 -6.8498 34 1 2.5875 -0.4291 -7.2852 35 1 3.1563 1.7189 -8.3133 36 1 1.9520 1.9886 -7.0306 37 1 3.9388 4.0234 -8.0642 38 1 2.7343 4.2936 -6.7818 39 1 4.0267 7.6635 -7.5156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343902069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:38 Heat of formation + Delta-G solvation = -116.252132 kcal Electronic energy + Delta-G solvation = -21549.767650 eV Core-core repulsion = 18071.226275 eV Total energy + Delta-G solvation = -3478.541375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.46869 -41.28016 -38.78766 -37.51827 -36.39079 -34.97740 -33.91695 -31.85407 -30.48763 -29.03866 -28.09352 -25.76006 -24.58063 -23.88117 -23.05277 -21.97587 -21.18523 -19.79292 -18.72533 -18.18134 -18.01352 -17.20172 -16.96842 -16.54859 -16.37539 -16.12993 -15.81012 -15.30273 -15.19658 -14.77107 -14.43954 -14.28210 -13.86658 -13.75553 -13.27801 -13.07665 -12.96563 -12.73021 -12.58015 -12.48899 -12.17262 -12.16053 -12.01485 -11.87201 -11.83422 -11.41040 -11.35964 -11.32538 -10.92170 -10.30900 -9.78167 -8.34570 -6.47118 -0.09301 1.35419 1.39101 1.42907 1.49951 1.51612 1.85214 1.96228 2.32168 2.99576 3.01568 3.09809 3.57167 3.78137 3.87109 4.04940 4.06412 4.09233 4.17338 4.37532 4.44554 4.47648 4.59721 4.64100 4.71635 4.82397 4.87204 4.92700 5.09250 5.13480 5.18183 5.27107 5.31541 5.33886 5.51283 5.92214 6.09615 6.44287 6.49333 6.70439 6.76076 7.24721 8.77283 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003908 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.810455 B = 7163.956970 C = 8604.564798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 C -0.157 4.157 4 C 0.265 3.735 5 N -0.516 5.516 6 C 0.085 3.915 7 C -0.097 4.097 8 C 0.545 3.455 9 O -0.521 6.521 10 O -0.358 6.358 11 C 0.080 3.920 12 C 0.054 3.946 13 O -0.410 6.410 14 C 0.209 3.791 15 C -0.552 4.552 16 H 0.059 0.941 17 C 0.011 3.989 18 N -0.928 5.928 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.265 1.265 23 N -0.533 5.533 24 H 0.436 0.564 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.201 0.799 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.058 0.942 37 H -0.008 1.008 38 H -0.009 1.009 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 -12.946 12.876 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.215 4.215 4 C 0.001 3.999 5 N -0.236 5.236 6 C -0.070 4.070 7 C -0.211 4.211 8 C 0.390 3.610 9 O -0.411 6.411 10 O -0.275 6.275 11 C 0.007 3.993 12 C -0.023 4.023 13 O -0.330 6.330 14 C 0.134 3.866 15 C -0.590 4.590 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.567 5.567 19 Si 0.802 3.198 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.190 1.190 23 N -0.137 5.137 24 H 0.277 0.723 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.491 -13.629 13.300 20.463 hybrid contribution 0.369 1.546 -1.334 2.075 sum -7.121 -12.083 11.966 18.437 Atomic orbital electron populations 1.21856 0.91753 1.02820 1.03603 1.19972 0.97268 0.95379 0.90735 1.21977 1.01499 0.93899 1.04116 1.24166 0.98076 0.89719 0.87943 1.70288 1.19677 1.12940 1.20657 1.23035 0.97935 0.98009 0.88045 1.20035 1.18773 0.92494 0.89775 1.19738 0.74228 0.80916 0.86075 1.90867 1.44335 1.40181 1.65725 1.86635 1.78602 1.33983 1.28255 1.23288 1.02458 0.96705 0.76857 1.22660 0.94394 0.88178 0.97081 1.87863 1.59680 1.19261 1.66199 1.19866 0.95492 0.77410 0.93853 1.21341 1.20264 0.93048 1.24344 0.92263 1.25895 0.98112 0.98687 0.96112 1.70041 1.39056 1.12740 1.34868 0.85286 0.78579 0.77024 0.78862 1.19230 1.19860 1.18954 1.43266 1.48163 1.13082 1.09190 0.72260 0.88907 0.92282 0.92808 0.86387 0.88580 0.92648 0.92590 0.78218 0.90684 0.86883 0.89729 0.92407 0.99051 0.99124 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.18 71.98 0.66 -0.94 16 2 C -0.01 -0.19 3.39 -11.54 -0.04 -0.23 16 3 C -0.16 -1.99 8.93 71.98 0.64 -1.35 16 4 C 0.27 5.60 6.84 138.20 0.95 6.55 16 5 N -0.52 -12.78 11.20 -187.35 -2.10 -14.88 16 6 C 0.08 2.14 11.66 84.12 0.98 3.12 16 7 C -0.10 -2.62 7.13 39.97 0.29 -2.34 16 8 C 0.54 16.81 7.93 70.00 0.56 17.36 16 9 O -0.52 -17.46 16.70 19.50 0.33 -17.13 16 10 O -0.36 -11.64 10.20 -55.22 -0.56 -12.21 16 11 C 0.08 2.41 5.86 71.98 0.42 2.83 16 12 C 0.05 1.87 6.33 71.98 0.46 2.33 16 13 O -0.41 -19.59 10.30 -145.57 -1.50 -21.09 16 14 C 0.21 11.41 5.69 71.24 0.41 11.81 16 15 C -0.55 -32.39 9.43 25.60 0.24 -32.15 16 16 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 17 C 0.01 0.62 5.46 84.65 0.46 1.08 16 18 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 19 Si 0.98 43.42 29.54 68.60 2.03 45.45 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 N -0.53 -12.26 5.94 -176.17 -1.05 -13.31 16 24 H 0.44 9.10 8.12 -92.70 -0.75 8.35 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.75 7.40 -2.39 -0.02 0.73 16 32 H 0.20 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 37 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -70.93 343.71 3.75 -67.18 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.30 Total: 12.13 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.02 Total: 8.08 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.86 Total: -82.42 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -1.74 Total: -50.43 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -70.93 3.75 -67.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343902069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.068 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds