Wall clock time and date at job start Tue Mar 31 2020 05:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00042 * 2 1 4 4 H 1.09001 * 109.47194 * 30.00139 * 3 2 1 5 5 C 1.53007 * 109.47381 * 270.00566 * 3 2 1 6 6 C 1.52996 * 109.47249 * 150.00313 * 3 2 1 7 7 C 1.52997 * 109.46947 * 294.99971 * 6 3 2 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 3 9 9 O 1.20826 * 119.99541 * 0.02562 * 8 7 6 10 10 O 1.34221 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.45198 * 116.99903 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47508 * 329.99753 * 11 10 8 13 13 C 1.50704 * 109.47348 * 90.00141 * 11 10 8 14 14 H 1.07996 * 120.00109 * 240.00359 * 13 11 10 15 15 C 1.37878 * 119.99691 * 59.99883 * 13 11 10 16 16 N 1.31522 * 119.99665 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 120.00313 * 0.02562 * 15 13 11 18 18 H 1.48498 * 109.46825 * 90.00136 * 17 15 13 19 19 H 1.48502 * 109.47185 * 210.00061 * 17 15 13 20 20 H 1.48495 * 109.46895 * 330.00120 * 17 15 13 21 21 C 1.50701 * 109.47336 * 209.99870 * 11 10 8 22 22 C 1.34512 * 125.79271 * 145.00080 * 21 11 10 23 23 C 1.41388 * 106.84314 * 180.02562 * 22 21 11 24 24 C 1.34514 * 106.83841 * 359.97438 * 23 22 21 25 25 O 1.34303 * 108.42206 * 359.74195 * 24 23 22 26 26 H 1.08996 * 109.46917 * 59.99650 * 1 2 3 27 27 H 1.08996 * 109.46845 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46686 * 299.99710 * 1 2 3 29 29 H 1.09001 * 109.46609 * 299.99932 * 5 3 2 30 30 H 1.08992 * 109.47067 * 59.99415 * 5 3 2 31 31 H 1.08998 * 109.47395 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47372 * 175.00281 * 6 3 2 33 33 H 1.09004 * 109.47108 * 55.00025 * 6 3 2 34 34 H 1.09001 * 109.46832 * 59.99979 * 7 6 3 35 35 H 1.09000 * 109.47611 * 300.00276 * 7 6 3 36 36 H 0.97001 * 119.99439 * 179.97438 * 16 15 13 37 37 H 1.08001 * 126.57808 * 0.02881 * 22 21 11 38 38 H 1.07993 * 126.57857 * 179.97438 * 23 22 21 39 39 H 1.07997 * 125.78464 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3590 1.2632 0.7212 7 6 3.1384 0.9184 2.1954 8 6 4.4669 0.8762 2.9056 9 8 5.4855 1.0995 2.2954 10 8 4.5185 0.5905 4.2161 11 6 5.8320 0.5679 4.8346 12 1 6.5760 0.2679 4.0967 13 6 6.1661 1.9423 5.3547 14 1 7.0362 2.4634 4.9835 15 6 5.3609 2.5345 6.3044 16 7 5.6522 3.7342 6.7579 17 14 3.8562 1.6330 6.9469 18 1 4.2338 0.8220 8.1321 19 1 2.8156 2.6195 7.3332 20 1 3.3232 0.7410 5.8861 21 6 5.8326 -0.4152 5.9768 22 6 6.8670 -1.1919 6.3456 23 6 6.4322 -1.9538 7.4545 24 6 5.1583 -1.5966 7.6973 25 8 4.8024 -0.6600 6.8029 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.8829 1.0775 -1.9564 30 1 1.2569 1.8015 -1.9563 31 1 2.6614 2.7670 -1.4425 32 1 3.8428 2.2370 0.6443 33 1 3.9932 0.5051 0.2616 34 1 2.6546 -0.0554 2.2722 35 1 2.5042 1.6764 2.6550 36 1 5.0854 4.1510 7.4258 37 1 7.8425 -1.2269 5.8834 38 1 7.0117 -2.6826 8.0015 39 1 4.5300 -1.9922 8.4815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344937074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:18 Heat of formation + Delta-G solvation = -114.518401 kcal Electronic energy + Delta-G solvation = -22624.866876 eV Core-core repulsion = 19114.107930 eV Total energy + Delta-G solvation = -3510.758946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.93526 -39.51663 -38.40644 -35.82444 -33.63006 -32.96885 -32.33637 -30.73286 -30.02178 -26.94716 -26.76349 -24.79554 -22.79153 -21.38250 -21.04429 -19.98063 -19.67688 -17.65263 -17.06322 -16.92565 -16.41610 -15.79417 -15.39766 -15.28916 -15.06028 -14.88229 -14.26982 -13.57067 -13.41036 -13.12341 -12.96664 -12.63606 -12.44016 -12.39217 -12.08675 -11.84782 -11.56186 -11.53187 -11.32249 -11.17649 -10.92216 -10.68422 -10.59468 -10.21061 -9.74210 -9.66016 -9.35638 -9.21212 -9.04353 -8.67740 -7.67936 -6.34011 -4.47627 2.42651 3.08461 3.18219 3.25382 3.43190 3.50421 3.69031 3.81296 4.13653 4.39456 4.78376 4.88482 5.02617 5.09892 5.19826 5.22545 5.34312 5.41336 5.50119 5.53453 5.61709 5.63161 5.65713 5.78326 5.89884 6.04391 6.14406 6.18065 6.28990 6.36717 6.47153 6.60341 6.84626 7.12954 7.13106 7.24217 7.54662 7.86875 8.16488 8.63301 8.78408 9.25877 10.73075 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.004893 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.455941 B = 5721.091155 C = 6044.678116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.063 0.937 5 C -0.173 4.173 6 C -0.104 4.104 7 C -0.117 4.117 8 C 0.460 3.540 9 O -0.520 6.520 10 O -0.359 6.359 11 C 0.249 3.751 12 H 0.090 0.910 13 C -0.535 4.535 14 H 0.090 0.910 15 C 0.087 3.913 16 N -0.869 5.869 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.299 1.299 20 H -0.219 1.219 21 C 0.035 3.965 22 C -0.229 4.229 23 C -0.205 4.205 24 C -0.076 4.076 25 O -0.164 6.164 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.270 0.730 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -7.593 -8.464 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.081 0.919 5 C -0.231 4.231 6 C -0.141 4.141 7 C -0.154 4.154 8 C 0.303 3.697 9 O -0.410 6.410 10 O -0.276 6.276 11 C 0.197 3.803 12 H 0.108 0.892 13 C -0.571 4.571 14 H 0.108 0.892 15 C -0.121 4.121 16 N -0.503 5.503 17 Si 0.719 3.281 18 H -0.201 1.201 19 H -0.228 1.228 20 H -0.144 1.144 21 C -0.016 4.016 22 C -0.249 4.249 23 C -0.224 4.224 24 C -0.143 4.143 25 O -0.062 6.062 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.255 -7.404 -8.510 14.591 hybrid contribution -0.609 -0.096 0.783 0.996 sum -9.864 -7.500 -7.727 14.604 Atomic orbital electron populations 1.22768 0.81511 1.02559 0.99808 1.87947 1.19278 1.28010 1.95068 1.22217 0.95022 0.84547 0.95622 0.91931 1.22258 1.02084 1.01991 0.96723 1.21526 0.95501 1.04067 0.93047 1.21355 0.94115 1.05084 0.94890 1.23295 0.91337 0.73254 0.81802 1.90561 1.37065 1.45836 1.67564 1.86942 1.38480 1.79732 1.22427 1.19252 0.81259 0.93056 0.86735 0.89202 1.21103 1.13872 0.98259 1.23838 0.89218 1.25196 0.97847 0.94595 0.94476 1.69937 1.38200 1.14305 1.27863 0.86569 0.81896 0.78353 0.81278 1.20116 1.22785 1.14411 1.23105 0.86720 0.97075 0.94688 1.21226 1.00419 1.01608 1.01603 1.21625 0.95750 1.04343 1.00725 1.23788 0.97637 0.94740 0.98126 1.84492 1.39216 1.46337 1.36158 0.94363 0.89837 0.93953 0.91636 0.92695 0.91339 0.89485 0.90156 0.88000 0.88636 0.92002 0.83939 0.84223 0.79513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.70 9.88 -35.23 -0.35 -5.05 16 3 C 0.08 0.95 2.72 -26.73 -0.07 0.88 16 4 H 0.06 0.65 7.79 -51.93 -0.40 0.24 16 5 C -0.17 -1.68 9.53 37.16 0.35 -1.33 16 6 C -0.10 -1.45 4.21 -26.73 -0.11 -1.56 16 7 C -0.12 -1.85 5.71 -27.88 -0.16 -2.01 16 8 C 0.46 9.77 7.92 36.01 0.29 10.06 16 9 O -0.52 -12.15 15.20 -18.75 -0.29 -12.43 16 10 O -0.36 -8.52 6.69 -41.98 -0.28 -8.80 16 11 C 0.25 6.22 2.55 -29.03 -0.07 6.15 16 12 H 0.09 2.19 7.16 -51.93 -0.37 1.82 16 13 C -0.54 -15.35 9.51 -34.44 -0.33 -15.68 16 14 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 15 C 0.09 2.52 5.45 -17.82 -0.10 2.42 16 16 N -0.87 -26.25 13.96 55.43 0.77 -25.47 16 17 Si 0.89 22.45 22.92 -169.99 -3.90 18.56 16 18 H -0.27 -6.83 6.02 56.52 0.34 -6.49 16 19 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 20 H -0.22 -5.35 4.91 56.52 0.28 -5.07 16 21 C 0.03 0.81 5.34 -35.62 -0.19 0.62 16 22 C -0.23 -4.74 10.81 -39.70 -0.43 -5.17 16 23 C -0.21 -3.72 10.91 -39.70 -0.43 -4.15 16 24 C -0.08 -1.44 11.72 29.42 0.34 -1.09 16 25 O -0.16 -3.76 4.85 2.19 0.01 -3.75 16 26 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.10 1.50 7.82 -51.93 -0.41 1.10 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.14 2.64 8.06 -52.49 -0.42 2.22 16 38 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.19 2.69 8.06 -52.49 -0.42 2.26 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -33.36 324.63 -4.91 -38.27 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.96 Total: 3.27 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 0.18 Total: -9.49 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.77 Total: -25.47 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.90 Total: -30.03 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -3.90 Total: 18.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.36 -4.91 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344937074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.245 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds