Wall clock time and date at job start Tue Mar 31 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47332 * 2 1 4 4 C 1.42899 * 114.00262 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46952 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47298 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00432 * 180.27351 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08993 * 109.47491 * 330.00073 * 10 9 7 12 12 C 1.50706 * 109.46887 * 90.00045 * 10 9 7 13 13 H 1.08001 * 119.99914 * 239.99856 * 12 10 9 14 14 C 1.37878 * 119.99966 * 60.00384 * 12 10 9 15 15 N 1.31515 * 119.99763 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 120.00110 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.47161 * 90.00506 * 16 14 12 18 18 H 1.48502 * 109.47174 * 210.00360 * 16 14 12 19 19 H 1.48499 * 109.47270 * 330.00657 * 16 14 12 20 20 C 1.50704 * 109.46907 * 209.99697 * 10 9 7 21 21 C 1.34516 * 125.78433 * 145.00355 * 20 10 9 22 22 C 1.41385 * 106.84086 * 179.97438 * 21 20 10 23 23 C 1.34521 * 106.83744 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.79250 * 324.69650 * 20 10 9 25 25 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47189 * 299.99796 * 1 2 3 27 27 H 1.09000 * 109.47355 * 59.99614 * 1 2 3 28 28 H 1.09005 * 109.47032 * 240.00482 * 2 1 3 29 29 H 1.09000 * 109.47355 * 120.00386 * 2 1 3 30 30 H 1.09000 * 109.47391 * 60.00045 * 4 3 2 31 31 H 1.08998 * 109.47282 * 300.00210 * 4 3 2 32 32 H 1.08994 * 109.47101 * 59.99986 * 5 4 3 33 33 H 1.09006 * 109.46726 * 299.99777 * 5 4 3 34 34 H 1.09000 * 109.47764 * 59.99520 * 6 5 4 35 35 H 1.09006 * 109.46938 * 299.99298 * 6 5 4 36 36 H 0.97002 * 119.99321 * 179.97438 * 15 14 12 37 37 H 1.07996 * 126.58313 * 0.03006 * 21 20 10 38 38 H 1.07992 * 126.58013 * 179.97438 * 22 21 20 39 39 H 1.07996 * 125.78786 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3506 3.0592 0.0012 7 6 5.7392 4.5152 0.0024 8 8 4.8839 5.3687 0.0027 9 8 7.0353 4.8639 -0.0030 10 6 7.3358 6.2845 -0.0078 11 1 6.5385 6.8228 -0.5202 12 6 7.4446 6.7796 1.4115 13 1 6.7818 7.5557 1.7649 14 6 8.3903 6.2420 2.2586 15 7 8.4855 6.6745 3.4969 16 14 9.5363 4.8994 1.6474 17 1 10.7602 5.5158 1.0752 18 1 9.9107 4.0147 2.7798 19 1 8.8491 4.1004 0.6012 20 6 8.6412 6.5194 -0.7232 21 6 8.9370 7.5837 -1.4909 22 6 10.2577 7.3963 -1.9594 23 6 10.6897 6.2285 -1.4505 24 8 9.7085 5.7046 -0.6979 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8341 0.9764 -0.8891 31 1 3.8333 0.9767 0.8908 32 1 3.4223 3.4217 0.8911 33 1 3.4229 3.4222 -0.8889 34 1 5.7534 2.5760 -0.8890 35 1 5.7533 2.5753 0.8910 36 1 9.1507 6.2960 4.0929 37 1 8.2901 8.4210 -1.7070 38 1 10.8128 8.0625 -2.6031 39 1 11.6626 5.7893 -1.6149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:05 Heat of formation + Delta-G solvation = -116.916840 kcal Electronic energy + Delta-G solvation = -22114.414400 eV Core-core repulsion = 18603.551450 eV Total energy + Delta-G solvation = -3510.862950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.95854 -39.51412 -38.17841 -35.91072 -33.74497 -32.98548 -32.35777 -31.20673 -30.48086 -27.29557 -26.52402 -23.13651 -22.95108 -21.95906 -21.18039 -19.98994 -19.70351 -17.71901 -17.08157 -16.83425 -16.55575 -16.22623 -15.79053 -15.46455 -15.08585 -14.51741 -14.33167 -13.95222 -13.38806 -13.12021 -12.82312 -12.78793 -12.45916 -12.20032 -11.94073 -11.85401 -11.72153 -11.61001 -11.42537 -11.14468 -10.96893 -10.76740 -10.69349 -10.23321 -9.71465 -9.69940 -9.39538 -9.24008 -9.07096 -8.69415 -7.70216 -6.35272 -4.49079 2.40160 3.04318 3.14943 3.17976 3.36258 3.43274 3.57023 3.90336 4.11876 4.37539 4.82995 4.91878 5.00018 5.01086 5.07126 5.13836 5.23080 5.34601 5.44272 5.48299 5.55531 5.62024 5.64466 5.69412 5.75726 5.89897 6.12981 6.18962 6.26314 6.36162 6.45072 6.57978 6.82216 7.10469 7.11754 7.22220 7.50569 7.84507 8.14957 8.61058 8.74899 9.24208 10.71855 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.003919 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.862271 B = 7143.543233 C = 7538.309872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.064 3.936 5 C -0.107 4.107 6 C -0.115 4.115 7 C 0.460 3.540 8 O -0.516 6.516 9 O -0.359 6.359 10 C 0.250 3.750 11 H 0.091 0.909 12 C -0.536 4.536 13 H 0.090 0.910 14 C 0.087 3.913 15 N -0.868 5.868 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.298 1.298 19 H -0.219 1.219 20 C 0.034 3.966 21 C -0.229 4.229 22 C -0.205 4.205 23 C -0.076 4.076 24 O -0.164 6.164 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.271 0.729 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 -11.849 -9.125 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.013 4.013 5 C -0.144 4.144 6 C -0.153 4.153 7 C 0.303 3.697 8 O -0.406 6.406 9 O -0.276 6.276 10 C 0.198 3.802 11 H 0.108 0.892 12 C -0.571 4.571 13 H 0.108 0.892 14 C -0.121 4.121 15 N -0.502 5.502 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.227 1.227 19 H -0.145 1.145 20 C -0.016 4.016 21 C -0.248 4.248 22 C -0.225 4.225 23 C -0.143 4.143 24 O -0.062 6.062 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.123 -11.652 -8.793 15.470 hybrid contribution 1.127 -0.453 -0.113 1.220 sum -3.995 -12.105 -8.906 15.550 Atomic orbital electron populations 1.21744 0.93860 1.02050 1.03250 1.22442 0.95565 0.84053 0.99947 1.87899 1.21344 1.26136 1.95419 1.22497 0.81037 0.97531 1.00195 1.21272 0.93481 0.94508 1.05181 1.21241 0.96479 0.92324 1.05294 1.23133 0.82223 0.91606 0.72746 1.90584 1.51389 1.52665 1.45944 1.86942 1.25808 1.32690 1.82163 1.19261 0.86678 0.77561 0.96745 0.89153 1.21112 1.20054 1.23563 0.92396 0.89179 1.25203 0.96423 0.96054 0.94469 1.69934 1.33666 1.40955 1.05633 0.86560 0.81338 0.82308 0.77815 1.20101 1.22747 1.14466 1.23098 0.89421 0.91532 0.97592 1.21228 0.97716 1.01196 1.04675 1.21631 0.96600 0.98524 1.05700 1.23792 0.94816 0.97331 0.98346 1.84489 1.21488 1.45663 1.54561 0.91263 0.91774 0.91851 0.93551 0.93467 0.93268 0.93110 0.89942 0.90271 0.88388 0.88101 0.91961 0.83925 0.84211 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.39 -4.96 10.34 -35.23 -0.36 -5.33 16 4 C 0.06 0.74 5.94 37.16 0.22 0.96 16 5 C -0.11 -1.50 4.87 -26.73 -0.13 -1.63 16 6 C -0.12 -1.72 5.81 -27.89 -0.16 -1.88 16 7 C 0.46 9.55 7.92 36.00 0.29 9.84 16 8 O -0.52 -12.00 15.20 -18.76 -0.29 -12.29 16 9 O -0.36 -8.34 6.69 -41.99 -0.28 -8.62 16 10 C 0.25 6.16 2.55 -29.03 -0.07 6.09 16 11 H 0.09 2.17 7.15 -51.93 -0.37 1.80 16 12 C -0.54 -15.29 9.51 -34.44 -0.33 -15.62 16 13 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 14 C 0.09 2.50 5.45 -17.82 -0.10 2.41 16 15 N -0.87 -26.17 13.96 55.43 0.77 -25.39 16 16 Si 0.89 22.23 22.92 -169.99 -3.90 18.34 16 17 H -0.27 -6.76 6.01 56.52 0.34 -6.42 16 18 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 19 H -0.22 -5.26 4.92 56.52 0.28 -4.98 16 20 C 0.03 0.79 5.34 -35.62 -0.19 0.60 16 21 C -0.23 -4.67 10.81 -39.70 -0.43 -5.10 16 22 C -0.21 -3.67 10.91 -39.70 -0.43 -4.10 16 23 C -0.08 -1.41 11.72 29.42 0.34 -1.07 16 24 O -0.16 -3.70 4.85 2.21 0.01 -3.69 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.30 8.10 -51.93 -0.42 0.87 16 33 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 38 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.19 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -33.49 326.95 -5.51 -38.99 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.03 Total: 2.63 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.36 Total: -9.57 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.77 Total: -25.39 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.92 Total: -29.92 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -3.90 Total: 18.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.49 -5.51 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.924 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds