Wall clock time and date at job start Tue Mar 31 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47332 * 2 1 4 4 C 1.42899 * 114.00262 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46952 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47298 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00432 * 180.27351 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08993 * 109.47491 * 330.00073 * 10 9 7 12 12 C 1.50706 * 109.46887 * 90.00045 * 10 9 7 13 13 H 1.08001 * 119.99914 * 239.99856 * 12 10 9 14 14 C 1.37878 * 119.99966 * 60.00384 * 12 10 9 15 15 N 1.31515 * 119.99763 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 120.00110 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.47161 * 90.00506 * 16 14 12 18 18 H 1.48502 * 109.47174 * 210.00360 * 16 14 12 19 19 H 1.48499 * 109.47270 * 330.00657 * 16 14 12 20 20 C 1.50704 * 109.46907 * 209.99697 * 10 9 7 21 21 C 1.34516 * 125.78433 * 145.00355 * 20 10 9 22 22 C 1.41385 * 106.84086 * 179.97438 * 21 20 10 23 23 C 1.34521 * 106.83744 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.79250 * 324.69650 * 20 10 9 25 25 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47189 * 299.99796 * 1 2 3 27 27 H 1.09000 * 109.47355 * 59.99614 * 1 2 3 28 28 H 1.09005 * 109.47032 * 240.00482 * 2 1 3 29 29 H 1.09000 * 109.47355 * 120.00386 * 2 1 3 30 30 H 1.09000 * 109.47391 * 60.00045 * 4 3 2 31 31 H 1.08998 * 109.47282 * 300.00210 * 4 3 2 32 32 H 1.08994 * 109.47101 * 59.99986 * 5 4 3 33 33 H 1.09006 * 109.46726 * 299.99777 * 5 4 3 34 34 H 1.09000 * 109.47764 * 59.99520 * 6 5 4 35 35 H 1.09006 * 109.46938 * 299.99298 * 6 5 4 36 36 H 0.97002 * 119.99321 * 179.97438 * 15 14 12 37 37 H 1.07996 * 126.58313 * 0.03006 * 21 20 10 38 38 H 1.07992 * 126.58013 * 179.97438 * 22 21 20 39 39 H 1.07996 * 125.78786 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3506 3.0592 0.0012 7 6 5.7392 4.5152 0.0024 8 8 4.8839 5.3687 0.0027 9 8 7.0353 4.8639 -0.0030 10 6 7.3358 6.2845 -0.0078 11 1 6.5385 6.8228 -0.5202 12 6 7.4446 6.7796 1.4115 13 1 6.7818 7.5557 1.7649 14 6 8.3903 6.2420 2.2586 15 7 8.4855 6.6745 3.4969 16 14 9.5363 4.8994 1.6474 17 1 10.7602 5.5158 1.0752 18 1 9.9107 4.0147 2.7798 19 1 8.8491 4.1004 0.6012 20 6 8.6412 6.5194 -0.7232 21 6 8.9370 7.5837 -1.4909 22 6 10.2577 7.3963 -1.9594 23 6 10.6897 6.2285 -1.4505 24 8 9.7085 5.7046 -0.6979 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8341 0.9764 -0.8891 31 1 3.8333 0.9767 0.8908 32 1 3.4223 3.4217 0.8911 33 1 3.4229 3.4222 -0.8889 34 1 5.7534 2.5760 -0.8890 35 1 5.7533 2.5753 0.8910 36 1 9.1507 6.2960 4.0929 37 1 8.2901 8.4210 -1.7070 38 1 10.8128 8.0625 -2.6031 39 1 11.6626 5.7893 -1.6149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:05 Heat of formation + Delta-G solvation = -139.108051 kcal Electronic energy + Delta-G solvation = -22115.376683 eV Core-core repulsion = 18603.551450 eV Total energy + Delta-G solvation = -3511.825233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.53886 -41.23661 -39.07900 -37.67748 -35.10080 -34.88195 -33.95545 -32.41861 -31.85667 -28.81958 -27.98470 -24.96203 -23.65520 -23.31589 -22.64953 -21.52539 -21.32326 -19.50358 -18.76929 -18.34574 -17.74128 -17.43362 -17.39178 -16.86823 -16.64527 -16.19171 -15.42837 -15.30194 -15.01779 -14.82713 -14.01207 -13.92310 -13.79538 -13.62708 -13.40574 -13.33607 -13.11885 -12.80792 -12.66315 -12.50681 -12.44095 -12.12880 -11.88581 -11.78718 -11.68128 -11.25079 -11.11657 -10.90445 -10.54016 -10.51399 -9.30969 -8.54070 -6.74187 0.80431 1.24035 1.36907 1.47504 1.56075 1.76567 2.00654 2.32676 2.46253 2.77337 2.94257 3.67363 3.96057 4.04760 4.12766 4.19722 4.20428 4.27614 4.32424 4.40589 4.48324 4.50108 4.54130 4.55829 4.65231 4.88801 4.93449 5.02677 5.05808 5.09880 5.11038 5.21199 5.27010 5.29364 5.67669 5.75055 5.99875 6.27320 6.32033 6.36168 6.94063 7.07122 8.57525 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.003919 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.862271 B = 7143.543233 C = 7538.309872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.418 6.418 4 C 0.068 3.932 5 C -0.102 4.102 6 C -0.104 4.104 7 C 0.447 3.553 8 O -0.550 6.550 9 O -0.362 6.362 10 C 0.261 3.739 11 H 0.081 0.919 12 C -0.554 4.554 13 H 0.042 0.958 14 C 0.039 3.961 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.299 1.299 19 H -0.205 1.205 20 C -0.010 4.010 21 C -0.223 4.223 22 C -0.205 4.205 23 C -0.071 4.071 24 O -0.185 6.185 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.275 0.725 37 H 0.154 0.846 38 H 0.181 0.819 39 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 -14.378 -11.380 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.339 6.339 4 C -0.008 4.008 5 C -0.140 4.140 6 C -0.141 4.141 7 C 0.293 3.707 8 O -0.442 6.442 9 O -0.279 6.279 10 C 0.208 3.792 11 H 0.099 0.901 12 C -0.590 4.590 13 H 0.060 0.940 14 C -0.164 4.164 15 N -0.554 5.554 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.228 1.228 19 H -0.129 1.129 20 C -0.060 4.060 21 C -0.242 4.242 22 C -0.223 4.223 23 C -0.136 4.136 24 O -0.083 6.083 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.084 0.916 37 H 0.172 0.828 38 H 0.198 0.802 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.352 -14.183 -11.063 18.297 hybrid contribution 0.482 0.420 0.481 0.800 sum -2.870 -13.763 -10.583 17.597 Atomic orbital electron populations 1.21784 0.93254 1.03381 1.02483 1.22683 0.96180 0.82696 1.01172 1.87862 1.21940 1.28398 1.95685 1.22453 0.80929 0.95337 1.02074 1.21192 0.92863 0.96593 1.03363 1.21366 0.97007 0.87800 1.07928 1.24422 0.81016 0.94012 0.71256 1.90572 1.51895 1.54331 1.47358 1.86879 1.27352 1.31119 1.82561 1.18807 0.87990 0.78010 0.94437 0.90133 1.21181 1.19564 1.23035 0.95175 0.93984 1.26032 0.97828 0.98268 0.94290 1.70045 1.35153 1.43093 1.07067 0.85593 0.79454 0.79525 0.77401 1.19220 1.22813 1.12935 1.22700 0.89428 0.93284 1.00545 1.21666 0.99227 1.00232 1.03096 1.22073 0.95342 0.99072 1.05847 1.24827 0.95216 0.97266 0.96321 1.84361 1.21953 1.46247 1.55782 0.88883 0.92734 0.92438 0.92001 0.92449 0.90792 0.91680 0.92604 0.91435 0.84580 0.86181 0.91620 0.82839 0.80166 0.74888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.81 6.66 71.98 0.48 1.29 16 3 O -0.42 -10.14 10.34 -148.98 -1.54 -11.68 16 4 C 0.07 1.42 5.94 71.98 0.43 1.84 16 5 C -0.10 -2.80 4.87 30.59 0.15 -2.65 16 6 C -0.10 -2.89 5.81 29.85 0.17 -2.71 16 7 C 0.45 18.67 7.92 71.23 0.56 19.23 16 8 O -0.55 -26.60 15.20 21.94 0.33 -26.27 16 9 O -0.36 -16.76 6.69 -48.71 -0.33 -17.08 16 10 C 0.26 13.17 2.55 29.10 0.07 13.25 16 11 H 0.08 4.08 7.15 -2.39 -0.02 4.07 16 12 C -0.55 -33.20 9.51 25.60 0.24 -32.96 16 13 H 0.04 2.81 8.06 -2.91 -0.02 2.79 16 14 C 0.04 2.31 5.45 84.65 0.46 2.77 16 15 N -0.92 -57.50 13.96 21.45 0.30 -57.20 16 16 Si 0.95 46.05 22.92 68.60 1.57 47.62 16 17 H -0.26 -12.26 6.01 99.48 0.60 -11.67 16 18 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 19 H -0.20 -9.28 4.92 99.48 0.49 -8.79 16 20 C -0.01 -0.45 5.34 24.83 0.13 -0.32 16 21 C -0.22 -8.71 10.81 22.19 0.24 -8.47 16 22 C -0.20 -6.48 10.91 22.19 0.24 -6.24 16 23 C -0.07 -2.30 11.72 66.97 0.79 -1.52 16 24 O -0.18 -7.81 4.85 0.89 0.00 -7.80 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.07 1.98 8.10 -2.38 -0.02 1.96 16 34 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 36 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 37 H 0.15 5.47 8.06 -2.91 -0.02 5.44 16 38 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.23 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -77.35 326.95 5.75 -71.60 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.70 Total: 18.77 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.71 Total: -17.95 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.30 Total: -57.20 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -1.53 Total: -62.84 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.57 Total: 47.62 kcal Total: -77.35 5.75 -71.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.512 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds