Wall clock time and date at job start Tue Mar 31 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35451 * 126.77251 * 2 1 4 4 C 1.41380 * 103.98348 * 180.09925 * 3 2 1 5 5 C 1.50703 * 126.80366 * 179.89330 * 4 3 2 6 6 O 1.42898 * 109.46942 * 359.69988 * 5 4 3 7 7 C 1.42899 * 114.00137 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47505 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99780 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99873 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00320 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99725 * 180.02562 * 10 8 7 13 13 H 1.09003 * 109.47147 * 359.97438 * 12 10 8 14 14 C 1.53009 * 109.46773 * 239.99564 * 12 10 8 15 15 C 1.50699 * 109.47787 * 119.99574 * 12 10 8 16 16 H 1.07997 * 119.99542 * 5.35008 * 15 12 10 17 17 C 1.37873 * 120.00149 * 185.35708 * 15 12 10 18 18 N 1.31513 * 119.99945 * 5.15122 * 17 15 12 19 19 Si 1.86804 * 119.99910 * 185.15151 * 17 15 12 20 20 H 1.48500 * 109.47164 * 84.99518 * 19 17 15 21 21 H 1.48496 * 109.47169 * 204.99936 * 19 17 15 22 22 H 1.48498 * 109.47038 * 324.99819 * 19 17 15 23 23 N 1.30175 * 106.39785 * 359.62435 * 4 3 2 24 24 O 1.20930 * 111.60243 * 0.24241 * 23 4 3 25 25 H 1.09001 * 109.46814 * 180.30103 * 1 2 3 26 26 H 1.09003 * 109.47417 * 300.30258 * 1 2 3 27 27 H 1.09005 * 109.47226 * 60.30011 * 1 2 3 28 28 H 1.07998 * 128.01359 * 359.96482 * 3 2 1 29 29 H 1.09004 * 109.46880 * 239.70425 * 5 4 3 30 30 H 1.08997 * 109.47574 * 119.71001 * 5 4 3 31 31 H 1.09000 * 109.47106 * 60.00295 * 7 6 5 32 32 H 1.09001 * 109.47434 * 300.00836 * 7 6 5 33 33 H 1.09005 * 109.47450 * 270.00703 * 11 10 8 34 34 H 1.09000 * 109.47030 * 30.00990 * 11 10 8 35 35 H 1.09001 * 109.47202 * 150.00567 * 11 10 8 36 36 H 1.09002 * 109.46614 * 174.89286 * 14 12 10 37 37 H 1.09000 * 109.46775 * 294.88488 * 14 12 10 38 38 H 1.08994 * 109.46964 * 54.88884 * 14 12 10 39 39 H 0.97002 * 119.99743 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0024 5 6 4.9210 1.3001 -0.0056 6 8 4.6499 2.7031 -0.0131 7 6 5.8213 3.5215 -0.0173 8 6 5.4195 4.9740 -0.0244 9 8 4.2455 5.2783 -0.0261 10 7 6.3648 5.9346 -0.0297 11 6 7.7828 5.5670 -0.0282 12 6 5.9741 7.3466 -0.0361 13 1 4.8867 7.4227 -0.0359 14 6 6.5323 8.0245 -1.2891 15 6 6.5258 8.0261 1.1907 16 1 7.1802 7.4860 1.8588 17 6 6.1950 9.3371 1.4601 18 7 5.3196 9.9631 0.7042 19 14 6.9903 10.2243 2.8989 20 1 8.2949 10.7904 2.4714 21 1 6.1006 11.3216 3.3567 22 1 7.2075 9.2661 4.0123 23 7 3.4764 -0.7563 0.0047 24 8 2.3095 -1.0736 0.0061 25 1 -0.3633 -1.0277 0.0054 26 1 -0.3634 0.5185 0.8873 27 1 -0.3634 0.5092 -0.8927 28 1 2.0345 2.1271 -0.0005 29 1 5.4949 1.0363 -0.8940 30 1 5.4941 1.0454 0.8859 31 1 6.4135 3.3037 -0.9061 32 1 6.4135 3.3130 0.8738 33 1 8.1348 5.4812 0.9999 34 1 7.9110 4.6117 -0.5371 35 1 8.3577 6.3346 -0.5462 36 1 6.1669 9.0502 -1.3405 37 1 7.6214 8.0286 -1.2453 38 1 6.2062 7.4777 -2.1738 39 1 5.0871 10.8856 0.8936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346798706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:41 Heat of formation + Delta-G solvation = -14.094536 kcal Electronic energy + Delta-G solvation = -21765.056492 eV Core-core repulsion = 18290.945002 eV Total energy + Delta-G solvation = -3474.111489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.01528 -39.31320 -37.65834 -35.29586 -34.29237 -33.45554 -32.86190 -30.08240 -28.35281 -27.89403 -26.41985 -26.02909 -25.17894 -22.99761 -21.27301 -20.39956 -18.41975 -17.81246 -17.50432 -16.73542 -16.57257 -16.22245 -15.80222 -15.25941 -14.71226 -14.43534 -14.28005 -13.76591 -13.59655 -13.47690 -12.95836 -12.75874 -12.62451 -12.47041 -12.11058 -11.87692 -11.66166 -11.54219 -11.24596 -11.03824 -10.91275 -10.75700 -10.37979 -10.28608 -10.20592 -9.66766 -9.37818 -9.22408 -8.91611 -8.44003 -7.65193 -6.09651 -4.15965 1.34685 2.13677 2.91037 3.06164 3.25796 3.29777 3.33288 3.36186 3.96862 4.31777 4.39033 4.62334 4.91506 4.95309 5.10479 5.11886 5.16199 5.18330 5.24057 5.25171 5.30365 5.36703 5.57535 5.63887 5.69974 5.98622 6.05543 6.22520 6.68519 6.70803 6.91065 6.99011 7.35553 7.50719 7.67425 7.91883 8.13282 8.14278 8.46583 8.82870 9.01199 9.49920 10.97755 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.003149 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.081538 B = 8890.020040 C = 9244.316423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.043 4.043 3 C -0.202 4.202 4 C 0.021 3.979 5 C 0.142 3.858 6 O -0.355 6.355 7 C 0.047 3.953 8 C 0.505 3.495 9 O -0.530 6.530 10 N -0.592 5.592 11 C 0.083 3.917 12 C 0.258 3.742 13 H 0.069 0.931 14 C -0.141 4.141 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 N -0.365 5.365 24 O 0.098 5.902 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.180 0.820 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.015 0.985 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -17.621 -2.747 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.223 4.223 4 C -0.137 4.137 5 C 0.064 3.936 6 O -0.272 6.272 7 C -0.033 4.033 8 C 0.291 3.709 9 O -0.407 6.407 10 N -0.326 5.326 11 C -0.060 4.060 12 C 0.158 3.842 13 H 0.087 0.913 14 C -0.200 4.200 15 C -0.568 4.568 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.200 1.200 23 N -0.071 5.071 24 O 0.031 5.969 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.197 0.803 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.965 -18.188 -2.766 18.502 hybrid contribution 0.625 1.259 0.818 1.626 sum -1.340 -16.929 -1.947 17.094 Atomic orbital electron populations 1.20328 0.83867 1.04380 1.04364 1.24535 0.96434 0.85955 1.03660 1.22507 0.90676 1.01667 1.07498 1.23156 0.97293 0.90021 1.03222 1.20301 0.90236 0.81258 1.01803 1.87974 1.29724 1.14059 1.95488 1.22393 0.87974 0.90832 1.02073 1.19889 0.86534 0.86198 0.78321 1.90680 1.17691 1.82846 1.49502 1.48190 1.04990 1.08388 1.71022 1.21605 0.83380 0.99802 1.01262 1.18973 0.98350 0.73023 0.93843 0.91271 1.22035 0.99192 1.02471 0.96301 1.21273 1.30174 0.96994 1.08312 0.92246 1.24904 0.94695 0.97453 0.96636 1.69939 1.31331 1.11955 1.39142 0.86527 0.79165 0.79351 0.82451 1.20521 1.21146 1.19984 1.73752 0.97381 1.15360 1.20651 1.84789 1.11062 1.33227 1.67854 0.90068 0.89070 0.89091 0.80289 0.90908 0.90853 0.90586 0.90456 0.93076 0.93086 0.90617 0.90251 0.94728 0.96576 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.01 0.38 -0.08 16 2 C -0.04 -0.46 7.49 -35.30 -0.26 -0.72 16 3 C -0.20 -2.65 10.45 -39.38 -0.41 -3.06 16 4 C 0.02 0.29 7.28 -82.10 -0.60 -0.31 16 5 C 0.14 1.78 6.56 36.01 0.24 2.01 16 6 O -0.36 -5.68 9.37 -55.14 -0.52 -6.19 16 7 C 0.05 0.70 4.97 36.01 0.18 0.88 16 8 C 0.51 10.52 7.75 -10.99 -0.09 10.43 16 9 O -0.53 -13.53 15.83 -14.35 -0.23 -13.76 16 10 N -0.59 -12.39 2.75 -175.26 -0.48 -12.87 16 11 C 0.08 1.31 9.43 59.84 0.56 1.87 16 12 C 0.26 6.52 2.51 -69.08 -0.17 6.35 16 13 H 0.07 2.06 6.88 -51.93 -0.36 1.70 16 14 C -0.14 -3.28 8.84 37.16 0.33 -2.95 16 15 C -0.53 -14.19 8.34 -34.44 -0.29 -14.48 16 16 H 0.06 1.56 7.51 -52.49 -0.39 1.16 16 17 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 18 N -0.89 -25.22 11.99 55.43 0.66 -24.56 16 19 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 N -0.37 -5.07 12.07 33.43 0.40 -4.66 16 24 O 0.10 1.21 11.20 17.18 0.19 1.41 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.18 2.42 8.05 -52.49 -0.42 2.00 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.90 7.40 -51.93 -0.38 0.52 16 32 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 35 H 0.08 1.19 6.54 -51.93 -0.34 0.85 16 36 H 0.08 2.01 6.84 -51.93 -0.36 1.66 16 37 H 0.03 0.73 6.88 -51.93 -0.36 0.37 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -33.63 333.32 -5.65 -39.29 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.46 Total: -1.23 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.23 Total: 1.65 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.59 Total: -42.09 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.55 Total: -18.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.63 -5.65 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346798706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.191 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds