Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35450 * 126.78047 * 2 1 4 4 C 1.41381 * 103.98214 * 180.09406 * 3 2 1 5 5 C 1.50708 * 126.79971 * 179.88670 * 4 3 2 6 6 O 1.42901 * 109.46875 * 359.70863 * 5 4 3 7 7 C 1.42899 * 113.99607 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46876 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 H 1.09005 * 109.47049 * 0.02562 * 12 10 8 14 14 C 1.53000 * 109.47264 * 120.00374 * 12 10 8 15 15 C 1.50701 * 109.47728 * 240.00492 * 12 10 8 16 16 H 1.08007 * 119.99342 * 0.02562 * 15 12 10 17 17 C 1.37869 * 120.00341 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00236 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00275 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47140 * 89.99582 * 19 17 15 21 21 H 1.48498 * 109.47584 * 209.99856 * 19 17 15 22 22 H 1.48508 * 109.46713 * 329.99995 * 19 17 15 23 23 N 1.30175 * 106.39852 * 359.62393 * 4 3 2 24 24 O 1.20917 * 111.60351 * 0.23962 * 23 4 3 25 25 H 1.08992 * 109.47409 * 180.30345 * 1 2 3 26 26 H 1.09002 * 109.47078 * 300.31021 * 1 2 3 27 27 H 1.09003 * 109.46544 * 60.29997 * 1 2 3 28 28 H 1.07993 * 128.00572 * 359.95235 * 3 2 1 29 29 H 1.09003 * 109.47255 * 239.70991 * 5 4 3 30 30 H 1.09001 * 109.46743 * 119.70634 * 5 4 3 31 31 H 1.09004 * 109.47206 * 60.00168 * 7 6 5 32 32 H 1.08994 * 109.47548 * 299.99825 * 7 6 5 33 33 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 34 34 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 35 35 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 36 36 H 1.09007 * 109.46721 * 300.00461 * 14 12 10 37 37 H 1.08995 * 109.47131 * 60.00106 * 14 12 10 38 38 H 1.08998 * 109.47544 * 180.02562 * 14 12 10 39 39 H 0.96992 * 119.99953 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5370 -0.0023 5 6 4.9212 1.2997 -0.0056 6 8 4.6501 2.7028 -0.0131 7 6 5.8217 3.5209 -0.0162 8 6 5.4200 4.9734 -0.0247 9 8 4.2460 5.2779 -0.0273 10 7 6.3653 5.9341 -0.0232 11 6 7.7834 5.5664 -0.0196 12 6 5.9748 7.3460 -0.0253 13 1 4.8874 7.4223 -0.0276 14 6 6.5310 8.0310 1.2246 15 6 6.5284 8.0186 -1.2551 16 1 7.1124 7.4508 -1.9644 17 6 6.2894 9.3586 -1.4747 18 7 5.5779 10.0498 -0.6112 19 14 6.9763 10.1924 -2.9986 20 1 5.9914 10.0900 -4.1053 21 1 7.2416 11.6233 -2.7030 22 1 8.2419 9.5267 -3.3991 23 7 3.4763 -0.7566 0.0049 24 8 2.3094 -1.0737 0.0063 25 1 -0.3634 -1.0276 0.0054 26 1 -0.3633 0.5187 0.8872 27 1 -0.3632 0.5092 -0.8927 28 1 2.0346 2.1269 -0.0007 29 1 5.4951 1.0358 -0.8940 30 1 5.4941 1.0450 0.8861 31 1 6.4146 3.3032 -0.9045 32 1 6.4130 3.3124 0.8754 33 1 8.1375 5.4742 -1.0463 34 1 8.3573 6.3370 0.4949 35 1 7.9105 4.6141 0.4954 36 1 6.1305 7.5445 2.1141 37 1 7.6183 7.9547 1.2272 38 1 6.2401 9.0814 1.2233 39 1 5.4094 10.9924 -0.7659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346798708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = -12.688821 kcal Electronic energy + Delta-G solvation = -21765.096008 eV Core-core repulsion = 18291.045475 eV Total energy + Delta-G solvation = -3474.050533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.02190 -39.31913 -37.66325 -35.30919 -34.29779 -33.46080 -32.90399 -30.02278 -28.33133 -27.89826 -26.41906 -26.02068 -25.20879 -23.00250 -21.24890 -20.40057 -18.42240 -17.81787 -17.50913 -16.73052 -16.58296 -16.22401 -15.81575 -15.26268 -14.72742 -14.43532 -14.29970 -13.77073 -13.59585 -13.48244 -12.95839 -12.76720 -12.63868 -12.47593 -12.11556 -11.87960 -11.57867 -11.53103 -11.24956 -11.06872 -10.85610 -10.73720 -10.38164 -10.25570 -10.18692 -9.67258 -9.38299 -9.21057 -8.94155 -8.44230 -7.64419 -6.09134 -4.17371 1.34252 2.13197 2.90648 3.05742 3.26044 3.28860 3.32964 3.35500 3.96512 4.31230 4.38417 4.62002 4.91079 4.94924 5.10226 5.11446 5.16115 5.17815 5.22943 5.24792 5.29871 5.36177 5.57046 5.64496 5.69555 5.99747 6.04957 6.23629 6.71992 6.77541 6.92497 7.03531 7.40415 7.49144 7.68910 7.99298 8.12916 8.16427 8.46667 8.80921 9.00402 9.49247 10.96257 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028129 B = 0.003129 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.174337 B = 8944.994026 C = 9270.951013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.043 4.043 3 C -0.202 4.202 4 C 0.021 3.979 5 C 0.142 3.858 6 O -0.355 6.355 7 C 0.047 3.953 8 C 0.505 3.495 9 O -0.532 6.532 10 N -0.592 5.592 11 C 0.084 3.916 12 C 0.259 3.741 13 H 0.064 0.936 14 C -0.147 4.147 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 N -0.365 5.365 24 O 0.098 5.902 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.180 0.820 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.012 0.988 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -17.689 2.532 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.223 4.223 4 C -0.137 4.137 5 C 0.064 3.936 6 O -0.273 6.273 7 C -0.033 4.033 8 C 0.290 3.710 9 O -0.409 6.409 10 N -0.326 5.326 11 C -0.060 4.060 12 C 0.159 3.841 13 H 0.082 0.918 14 C -0.206 4.206 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 N -0.071 5.071 24 O 0.031 5.969 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.197 0.803 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.113 0.887 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.370 -18.246 2.574 18.579 hybrid contribution 0.558 1.197 -0.864 1.578 sum -1.812 -17.049 1.710 17.231 Atomic orbital electron populations 1.20326 0.83869 1.04384 1.04361 1.24537 0.96434 0.85955 1.03663 1.22503 0.90678 1.01661 1.07507 1.23157 0.97292 0.90019 1.03232 1.20304 0.90236 0.81254 1.01808 1.87974 1.29723 1.14065 1.95492 1.22394 0.87973 0.90824 1.02086 1.19895 0.86527 0.86216 0.78317 1.90675 1.17713 1.82862 1.49622 1.48202 1.05030 1.08386 1.70938 1.21604 0.83350 0.99815 1.01249 1.18964 0.97953 0.73009 0.94134 0.91805 1.22103 0.98551 1.04158 0.95778 1.21314 1.34176 0.94543 1.06476 0.92253 1.24894 0.94996 0.97164 0.96737 1.69877 1.38683 1.08715 1.35320 0.86482 0.79278 0.78573 0.82968 1.20583 1.21110 1.19930 1.73747 0.97381 1.15363 1.20638 1.84788 1.11061 1.33228 1.67846 0.90064 0.89089 0.89077 0.80298 0.90849 0.90900 0.90458 0.90563 0.93078 0.90540 0.93102 0.96899 0.95047 0.88703 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.45 36.00 0.38 -0.08 16 2 C -0.04 -0.46 7.49 -35.30 -0.26 -0.72 16 3 C -0.20 -2.64 10.45 -39.38 -0.41 -3.05 16 4 C 0.02 0.29 7.28 -82.10 -0.60 -0.31 16 5 C 0.14 1.77 6.56 36.01 0.24 2.01 16 6 O -0.36 -5.66 9.37 -55.14 -0.52 -6.18 16 7 C 0.05 0.70 4.97 36.01 0.18 0.88 16 8 C 0.51 10.50 7.75 -10.98 -0.09 10.42 16 9 O -0.53 -13.51 15.83 -14.35 -0.23 -13.73 16 10 N -0.59 -12.42 2.75 -175.26 -0.48 -12.90 16 11 C 0.08 1.33 9.49 59.85 0.57 1.89 16 12 C 0.26 6.58 2.64 -69.08 -0.18 6.39 16 13 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 14 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 15 C -0.53 -14.13 8.37 -34.44 -0.29 -14.42 16 16 H 0.06 1.56 7.65 -52.48 -0.40 1.16 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 19 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 N -0.37 -5.05 12.07 33.42 0.40 -4.65 16 24 O 0.10 1.21 11.20 17.16 0.19 1.40 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.18 2.41 8.05 -52.49 -0.42 1.99 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.97 8.11 -51.93 -0.42 0.54 16 32 H 0.08 0.91 7.40 -51.93 -0.38 0.52 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 35 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 36 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 37 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -33.39 332.09 -5.66 -39.05 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.41 Total: -1.03 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.23 Total: 1.52 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.55 Total: -41.92 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.55 Total: -18.51 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.39 -5.66 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346798708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.359 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds