Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35450 * 126.78047 * 2 1 4 4 C 1.41381 * 103.98214 * 180.09406 * 3 2 1 5 5 C 1.50708 * 126.79971 * 179.88670 * 4 3 2 6 6 O 1.42901 * 109.46875 * 359.70863 * 5 4 3 7 7 C 1.42899 * 113.99607 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46876 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 H 1.09005 * 109.47049 * 0.02562 * 12 10 8 14 14 C 1.53000 * 109.47264 * 120.00374 * 12 10 8 15 15 C 1.50701 * 109.47728 * 240.00492 * 12 10 8 16 16 H 1.08007 * 119.99342 * 0.02562 * 15 12 10 17 17 C 1.37869 * 120.00341 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00236 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00275 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47140 * 89.99582 * 19 17 15 21 21 H 1.48498 * 109.47584 * 209.99856 * 19 17 15 22 22 H 1.48508 * 109.46713 * 329.99995 * 19 17 15 23 23 N 1.30175 * 106.39852 * 359.62393 * 4 3 2 24 24 O 1.20917 * 111.60351 * 0.23962 * 23 4 3 25 25 H 1.08992 * 109.47409 * 180.30345 * 1 2 3 26 26 H 1.09002 * 109.47078 * 300.31021 * 1 2 3 27 27 H 1.09003 * 109.46544 * 60.29997 * 1 2 3 28 28 H 1.07993 * 128.00572 * 359.95235 * 3 2 1 29 29 H 1.09003 * 109.47255 * 239.70991 * 5 4 3 30 30 H 1.09001 * 109.46743 * 119.70634 * 5 4 3 31 31 H 1.09004 * 109.47206 * 60.00168 * 7 6 5 32 32 H 1.08994 * 109.47548 * 299.99825 * 7 6 5 33 33 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 34 34 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 35 35 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 36 36 H 1.09007 * 109.46721 * 300.00461 * 14 12 10 37 37 H 1.08995 * 109.47131 * 60.00106 * 14 12 10 38 38 H 1.08998 * 109.47544 * 180.02562 * 14 12 10 39 39 H 0.96992 * 119.99953 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5370 -0.0023 5 6 4.9212 1.2997 -0.0056 6 8 4.6501 2.7028 -0.0131 7 6 5.8217 3.5209 -0.0162 8 6 5.4200 4.9734 -0.0247 9 8 4.2460 5.2779 -0.0273 10 7 6.3653 5.9341 -0.0232 11 6 7.7834 5.5664 -0.0196 12 6 5.9748 7.3460 -0.0253 13 1 4.8874 7.4223 -0.0276 14 6 6.5310 8.0310 1.2246 15 6 6.5284 8.0186 -1.2551 16 1 7.1124 7.4508 -1.9644 17 6 6.2894 9.3586 -1.4747 18 7 5.5779 10.0498 -0.6112 19 14 6.9763 10.1924 -2.9986 20 1 5.9914 10.0900 -4.1053 21 1 7.2416 11.6233 -2.7030 22 1 8.2419 9.5267 -3.3991 23 7 3.4763 -0.7566 0.0049 24 8 2.3094 -1.0737 0.0063 25 1 -0.3634 -1.0276 0.0054 26 1 -0.3633 0.5187 0.8872 27 1 -0.3632 0.5092 -0.8927 28 1 2.0346 2.1269 -0.0007 29 1 5.4951 1.0358 -0.8940 30 1 5.4941 1.0450 0.8861 31 1 6.4146 3.3032 -0.9045 32 1 6.4130 3.3124 0.8754 33 1 8.1375 5.4742 -1.0463 34 1 8.3573 6.3370 0.4949 35 1 7.9105 4.6141 0.4954 36 1 6.1305 7.5445 2.1141 37 1 7.6183 7.9547 1.2272 38 1 6.2401 9.0814 1.2233 39 1 5.4094 10.9924 -0.7659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346798708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = -34.567235 kcal Electronic energy + Delta-G solvation = -21766.044727 eV Core-core repulsion = 18291.045475 eV Total energy + Delta-G solvation = -3474.999252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.97708 -40.85126 -38.89333 -37.07667 -35.28709 -34.81828 -34.28381 -31.80819 -29.55055 -28.61761 -27.67481 -27.42869 -27.18937 -23.98882 -22.98790 -21.37556 -20.01650 -18.78097 -18.62434 -18.46303 -17.92101 -17.40069 -17.29116 -16.88988 -16.17825 -15.83819 -15.61780 -14.91940 -14.55367 -14.48714 -14.17626 -14.04831 -13.97834 -13.49962 -13.45256 -13.24886 -13.07696 -12.93854 -12.78548 -12.70291 -12.61682 -12.18002 -12.17148 -12.09326 -11.41077 -11.18437 -10.66733 -10.65062 -10.46855 -10.27498 -9.35225 -8.14685 -6.31538 0.43537 1.15480 1.41722 1.43129 1.52822 1.73296 1.78740 2.16710 2.40392 2.69895 3.13425 3.38672 3.62632 3.73962 4.04921 4.09762 4.20574 4.25222 4.34571 4.41731 4.46560 4.49217 4.71039 4.71793 4.80593 4.88254 4.89282 4.97464 5.04568 5.08094 5.22948 5.45768 5.58819 5.66574 5.91596 6.06939 6.15810 6.76657 6.80293 7.18867 7.31070 7.46590 8.89802 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028129 B = 0.003129 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.174337 B = 8944.994026 C = 9270.951013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 C -0.237 4.237 4 C 0.007 3.993 5 C 0.141 3.859 6 O -0.387 6.387 7 C 0.060 3.940 8 C 0.491 3.509 9 O -0.594 6.594 10 N -0.598 5.598 11 C 0.077 3.923 12 C 0.261 3.739 13 H 0.006 0.994 14 C -0.133 4.133 15 C -0.539 4.539 16 H 0.063 0.937 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.965 3.035 20 H -0.283 1.283 21 H -0.280 1.280 22 H -0.260 1.260 23 N -0.382 5.382 24 O 0.094 5.906 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.020 0.980 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 -19.482 2.103 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.259 4.259 4 C -0.151 4.151 5 C 0.064 3.936 6 O -0.306 6.306 7 C -0.019 4.019 8 C 0.279 3.721 9 O -0.476 6.476 10 N -0.330 5.330 11 C -0.065 4.065 12 C 0.160 3.840 13 H 0.024 0.976 14 C -0.192 4.192 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.790 3.210 20 H -0.209 1.209 21 H -0.206 1.206 22 H -0.184 1.184 23 N -0.090 5.090 24 O 0.028 5.972 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.184 0.816 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.713 -20.081 2.150 20.208 hybrid contribution -0.028 1.715 -0.710 1.856 sum -0.741 -18.366 1.440 18.437 Atomic orbital electron populations 1.20588 0.80649 1.06221 1.05521 1.25201 0.97950 0.84745 1.00567 1.22530 0.91426 1.01772 1.10190 1.23501 0.98182 0.90290 1.03093 1.20508 0.90026 0.79244 1.03811 1.87936 1.30838 1.15895 1.95883 1.22345 0.87901 0.86224 1.05423 1.21033 0.85576 0.88774 0.76682 1.90642 1.20398 1.84242 1.52284 1.48194 1.07509 1.06792 1.70546 1.21927 0.79854 1.02115 1.02571 1.18541 0.94675 0.76186 0.94645 0.97585 1.21884 0.99659 1.02259 0.95365 1.21595 1.34098 0.94937 1.07089 0.91925 1.25754 0.95263 0.97932 0.99633 1.70026 1.39725 1.08934 1.37067 0.85448 0.78882 0.77666 0.78971 1.20944 1.20588 1.18384 1.73729 0.98093 1.15309 1.21852 1.84756 1.10986 1.33646 1.67780 0.87900 0.87749 0.87845 0.81569 0.88869 0.88578 0.87220 0.86524 0.92208 0.90873 0.88141 0.96056 0.92984 0.91438 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.45 71.24 0.74 -0.03 16 2 C -0.02 -0.44 7.49 25.04 0.19 -0.25 16 3 C -0.24 -6.25 10.45 22.40 0.23 -6.01 16 4 C 0.01 0.19 7.28 43.58 0.32 0.51 16 5 C 0.14 3.23 6.56 71.24 0.47 3.70 16 6 O -0.39 -11.87 9.37 -129.94 -1.22 -13.09 16 7 C 0.06 1.62 4.97 71.24 0.35 1.97 16 8 C 0.49 20.33 7.75 87.66 0.68 21.01 16 9 O -0.59 -31.58 15.83 16.00 0.25 -31.33 16 10 N -0.60 -24.71 2.75 -826.78 -2.28 -26.99 16 11 C 0.08 2.21 9.49 127.77 1.21 3.42 16 12 C 0.26 13.62 2.64 44.25 0.12 13.73 16 13 H 0.01 0.39 6.90 -2.38 -0.02 0.37 16 14 C -0.13 -6.37 8.95 71.98 0.64 -5.72 16 15 C -0.54 -29.18 8.37 25.60 0.21 -28.97 16 16 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 17 C 0.01 0.75 5.30 84.65 0.45 1.20 16 18 N -0.92 -53.14 11.32 21.45 0.24 -52.89 16 19 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 N -0.38 -10.23 12.07 -49.56 -0.60 -10.83 16 24 O 0.09 2.23 11.20 71.59 0.80 3.03 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.17 4.74 8.05 -2.91 -0.02 4.72 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.11 2.27 8.11 -2.38 -0.02 2.25 16 32 H 0.12 2.21 7.40 -2.39 -0.02 2.19 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 2.15 6.43 -2.39 -0.02 2.13 16 35 H 0.10 1.87 6.43 -2.39 -0.02 1.85 16 36 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.05 2.21 6.66 -2.39 -0.02 2.20 16 38 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 39 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -77.43 332.09 5.91 -71.53 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.05 Total: 11.13 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.62 Total: 4.54 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.63 Total: -90.71 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.16 Total: -41.40 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -77.43 5.91 -71.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346798708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.959 kcal (2) G-P(sol) polarization free energy of solvation -77.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds